| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G67640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 2 | 0 | 0 | 60.00% | 5 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '14.477' Avg. expression score in LCM sample: '2.1165' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 3 | 1 | 5 | 62.50% | 83.33% | 8 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.309' Avg. expression score in LCM sample: '2.1165' Tissue used: 'full endosperm' |
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| AT5G67640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.03567 x 10-1 | 8 | 5 | 0 | 1 | 61.54% | 100.00% | 13 | 1 | TAIR8 |
Avg. embryo expression (dissected): '79.2624' Avg. embryo expression (LCM): '75.8915' |
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| AT5G67640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.98125 x 10-1 | 6 | 4 | 60.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.37154 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67630 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.24 x 10-4 | 218 | 45 | 82.89% | 263 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.84234 x 10-1 | 223 | 98 | 69.47% | 321 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.56511 x 10-1 | 47 | 21 | 10 | 28 | 69.12% | 73.68% | 68 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.773989' Avg. expression score for this sample: '229.122' Avg. expression score in LCM sample: '204.874' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 40 | 23 | 25 | 54 | 63.49% | 68.35% | 63 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.773989' Avg. expression score for this sample: '321.926' Avg. expression score in LCM sample: '204.874' Tissue used: 'full endosperm' |
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| AT5G67630 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.43407 x 10-1 | 72 | 63 | 17 | 16 | 53.33% | 48.48% | 135 | 33 | TAIR8 |
Avg. embryo expression (dissected): '534.409' Avg. embryo expression (LCM): '647.721' |
||||
| AT5G67630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.91241 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.1 x 10-6 | 1078 | 36 | 96.77% | 1114 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-11 | 759 | 43 | 94.64% | 802 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.9 x 10-24 | 147 | 1 | 1 | 79 | 99.32% | 98.75% | 148 | 80 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '190.76' Avg. expression score in LCM sample: '4.67394' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 386 | 1 | 7 | 783 | 99.74% | 99.11% | 387 | 790 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '422.178' Avg. expression score in LCM sample: '4.67394' Tissue used: 'full endosperm' |
|||||
| AT5G67620 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.6 x 10-5 | 48 | 6 | 1 | 3 | 88.89% | 75.00% | 54 | 4 | TAIR8 |
Avg. embryo expression (dissected): '47.0177' Avg. embryo expression (LCM): '17.3183' |
||||
| AT5G67620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 369 | 2 | 99.46% | 371 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.9468' Avg. expression score in LCM sample: '23.2521' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.1367' Avg. expression score in LCM sample: '23.2521' Tissue used: 'full endosperm' |
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| AT5G67610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 0 | 3 | 0 | 0 | 0.00% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '26.4975' Avg. embryo expression (LCM): '34.5738' |
|||||
| AT5G67610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67600 | WIH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.5 x 10-8 | 276 | 23 | 92.31% | 299 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67600 | WIH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 16 | 13 | 8 | 28 | 55.17% | 77.78% | 29 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001043' Avg. expression score for this sample: '58.8182' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67600 | WIH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.13 x 10-4 | 117 | 43 | 29 | 154 | 73.12% | 84.15% | 160 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001043' Avg. expression score for this sample: '264.748' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT5G67600 | WIH1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.34842 x 10-1 | 6 | 1 | 1 | 1 | 85.71% | 50.00% | 7 | 2 | TAIR8 |
Avg. embryo expression (dissected): '15.6076' Avg. embryo expression (LCM): '11.893' |
|||
| AT5G67600 | WIH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 23 | 6 | 79.31% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67600 | WIH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.357 x 10-3 | 117 | 14 | 89.31% | 131 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67590 | FRO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.087 x 10-3 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67590 | FRO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.2568 | 0 | 5 | 4 | 5 | 0.00% | 55.56% | 5 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.324544' Avg. expression score for this sample: '91.3163' Avg. expression score in LCM sample: '80.2065' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67590 | FRO1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 0 | 3 | 50.00% | 100.00% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.324544' Avg. expression score for this sample: '169.762' Avg. expression score in LCM sample: '80.2065' Tissue used: 'full endosperm' |
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| AT5G67590 | FRO1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.77512 x 10-1 | 11 | 11 | 3 | 0 | 50.00% | 0.00% | 22 | 3 | TAIR8 |
Avg. embryo expression (dissected): '126.795' Avg. embryo expression (LCM): '143.921' |
|||
| AT5G67590 | FRO1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.04461 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67590 | FRO1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.35749 x 10-1 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67580 | TRB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.16 x 10-4 | 173 | 20 | 89.64% | 193 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67580 | TRB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.99184 x 10-1 | 30 | 6 | 12 | 14 | 83.33% | 53.85% | 36 | 26 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.076289' Avg. expression score for this sample: '45.8341' Avg. expression score in LCM sample: '28.514' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67580 | TRB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.3942 x 10-2 | 53 | 17 | 21 | 70 | 75.71% | 76.92% | 70 | 91 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.076289' Avg. expression score for this sample: '61.776' Avg. expression score in LCM sample: '28.514' Tissue used: 'full endosperm' |
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| AT5G67580 | TRB2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.77213 x 10-1 | 15 | 6 | 3 | 3 | 71.43% | 50.00% | 21 | 6 | TAIR8 |
Avg. embryo expression (dissected): '34.4738' Avg. embryo expression (LCM): '26.3856' |
|||
| AT5G67580 | TRB2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.09135 x 10-1 | 18 | 7 | 72.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67580 | TRB2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.286 x 10-3 | 117 | 18 | 86.67% | 135 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67570 | DG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.02 x 10-4 | 69 | 4 | 94.52% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67570 | DG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.3191 x 10-1 | 16 | 5 | 6 | 14 | 76.19% | 70.00% | 21 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.163675' Avg. expression score for this sample: '45.672' Avg. expression score in LCM sample: '24.5602' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67570 | DG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.30052 x 10-1 | 39 | 14 | 13 | 41 | 73.58% | 75.93% | 53 | 54 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.163675' Avg. expression score for this sample: '59.5701' Avg. expression score in LCM sample: '24.5602' Tissue used: 'full endosperm' |
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| AT5G67570 | DG1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 12 | 15 | 4 | 6 | 44.44% | 60.00% | 27 | 10 | TAIR8 |
Avg. embryo expression (dissected): '56.1469' Avg. embryo expression (LCM): '53.487' |
|||
| AT5G67570 | DG1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.90666 x 10-1 | 13 | 1 | 92.86% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67570 | DG1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.37005 x 10-1 | 27 | 10 | 72.97% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67560 | ARLA1D | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67560 | ARLA1D | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '117.205' Avg. expression score in LCM sample: '80.2653' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67560 | ARLA1D | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 1 | 4 | 100.00% | 80.00% | 1 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '154.96' Avg. expression score in LCM sample: '80.2653' Tissue used: 'full endosperm' |
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| AT5G67560 | ARLA1D | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '74.6086' Avg. embryo expression (LCM): '124.795' |
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| AT5G67560 | ARLA1D | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67560 | ARLA1D | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '30.7464' Avg. expression score in LCM sample: '17.0496' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.562' Avg. expression score in LCM sample: '17.0496' Tissue used: 'full endosperm' |
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| AT5G67550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.768607' Avg. embryo expression (LCM): '0' |
||||||
| AT5G67550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.439 x 10-3 | 141 | 7 | 95.27% | 148 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.35699 x 10-1 | 27 | 11 | 5 | 21 | 71.05% | 80.77% | 38 | 26 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000053' Avg. expression score for this sample: '40.6076' Avg. expression score in LCM sample: '11.4203' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.9 x 10-6 | 44 | 7 | 7 | 73 | 86.27% | 91.25% | 51 | 80 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000053' Avg. expression score for this sample: '52.2518' Avg. expression score in LCM sample: '11.4203' Tissue used: 'full endosperm' |
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| AT5G67540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 6 | 5 | 1 | 0 | 54.55% | 0.00% | 11 | 1 | TAIR8 |
Avg. embryo expression (dissected): '17.5383' Avg. embryo expression (LCM): '11.0641' |
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| AT5G67540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.70594 x 10-1 | 30 | 2 | 93.75% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.843 x 10-3 | 95 | 5 | 95.00% | 100 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67530 | PUB49 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.6 x 10-4 | 109 | 23 | 82.58% | 132 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67530 | PUB49 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.7986 x 10-1 | 27 | 5 | 13 | 31 | 84.38% | 70.45% | 32 | 44 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.665579' Avg. expression score for this sample: '63.107' Avg. expression score in LCM sample: '42.2271' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67530 | PUB49 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.33246 x 10-1 | 15 | 21 | 29 | 48 | 41.67% | 62.34% | 36 | 77 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.665579' Avg. expression score for this sample: '80.1044' Avg. expression score in LCM sample: '42.2271' Tissue used: 'full endosperm' |
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| AT5G67530 | PUB49 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.69826 x 10-1 | 16 | 30 | 4 | 3 | 34.78% | 42.86% | 46 | 7 | TAIR8 |
Avg. embryo expression (dissected): '70.3959' Avg. embryo expression (LCM): '80.4502' |
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| AT5G67530 | PUB49 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.09707 x 10-1 | 13 | 5 | 72.22% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67530 | PUB49 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.539 x 10-2 | 75 | 21 | 78.12% | 96 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67520 | APK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.5806 x 10-1 | 96 | 19 | 83.48% | 115 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67520 | APK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.55643 x 10-1 | 4 | 5 | 6 | 9 | 44.44% | 60.00% | 9 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004217' Avg. expression score for this sample: '11.5291' Avg. expression score in LCM sample: '1.14644' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67520 | APK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.5 x 10-5 | 19 | 3 | 3 | 60 | 86.36% | 95.24% | 22 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004217' Avg. expression score for this sample: '27.1961' Avg. expression score in LCM sample: '1.14644' Tissue used: 'full endosperm' |
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| AT5G67520 | APK4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.90529 x 10-1 | 9 | 4 | 2 | 2 | 69.23% | 50.00% | 13 | 4 | TAIR8 |
Avg. embryo expression (dissected): '15.8496' Avg. embryo expression (LCM): '9.82081' |
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| AT5G67520 | APK4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67520 | APK4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.669 x 10-2 | 86 | 33 | 72.27% | 119 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.3 x 10-6 | 854 | 185 | 82.19% | 1039 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.52769 x 10-1 | 273 | 124 | 104 | 265 | 68.77% | 71.82% | 397 | 369 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000057' Avg. expression score for this sample: '477.313' Avg. expression score in LCM sample: '124.403' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.3 x 10-6 | 129 | 48 | 49 | 262 | 72.88% | 84.24% | 177 | 311 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000057' Avg. expression score for this sample: '217.448' Avg. expression score in LCM sample: '124.403' Tissue used: 'full endosperm' |
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| AT5G67510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.83683 x 10-1 | 634 | 812 | 89 | 187 | 43.85% | 67.75% | 1446 | 276 | TAIR8 |
Avg. embryo expression (dissected): '1544.93' Avg. embryo expression (LCM): '1198.78' |
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| AT5G67510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.87427 x 10-1 | 87 | 38 | 69.60% | 125 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.54465 x 10-1 | 770 | 233 | 76.77% | 1003 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67500 | VDAC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 649 | 32 | 95.30% | 681 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67500 | VDAC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.43803 x 10-1 | 94 | 25 | 50 | 65 | 78.99% | 56.52% | 119 | 115 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.458839' Avg. expression score for this sample: '178.613' Avg. expression score in LCM sample: '147.214' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67500 | VDAC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.7598 x 10-1 | 134 | 18 | 94 | 121 | 88.16% | 56.28% | 152 | 215 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.458839' Avg. expression score for this sample: '185.766' Avg. expression score in LCM sample: '147.214' Tissue used: 'full endosperm' |
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| AT5G67500 | VDAC2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.70579 x 10-1 | 95 | 48 | 29 | 9 | 66.43% | 23.68% | 143 | 38 | TAIR8 |
Avg. embryo expression (dissected): '241.347' Avg. embryo expression (LCM): '174.087' |
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| AT5G67500 | VDAC2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.7085 x 10-2 | 31 | 26 | 54.39% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67500 | VDAC2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.1 x 10-5 | 182 | 153 | 54.33% | 335 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G67490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.00268 x 10-1 | 53 | 12 | 81.54% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.60267 x 10-1 | 100 | 27 | 36 | 61 | 78.74% | 62.89% | 127 | 97 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.160488' Avg. expression score for this sample: '768.594' Avg. expression score in LCM sample: '158.194' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.55213 x 10-1 | 66 | 27 | 33 | 78 | 70.97% | 70.27% | 93 | 111 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.160488' Avg. expression score for this sample: '439.342' Avg. expression score in LCM sample: '158.194' Tissue used: 'full endosperm' |
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| AT5G67490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.2667 x 10-1 | 58 | 33 | 8 | 6 | 63.74% | 42.86% | 91 | 14 | TAIR8 |
Avg. embryo expression (dissected): '433.246' Avg. embryo expression (LCM): '235.762' |
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| AT5G67490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.90903 x 10-1 | 19 | 5 | 79.17% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.18514 x 10-1 | 73 | 25 | 74.49% | 98 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G67488 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G67488 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.479751' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G67488 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.28198' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G67488 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |