Displaying data sets 9701 - 9800 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G53170 FTSH11 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 8 3 72.73% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53170 FTSH11 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.8276 x 10-2 26 2 92.86% 28 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53160 RCAR3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 1 1 1 66.67% 50.00% 3 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '29.4896'
Avg. expression score in LCM sample: '23.3256'
Tissue used: 'pure endosperm, no chalazal'
AT5G53160 RCAR3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 15 11 12 30 57.69% 71.43% 26 42 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '58.3575'
Avg. expression score in LCM sample: '23.3256'
Tissue used: 'full endosperm'
AT5G53160 RCAR3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 3 4 1 1 42.86% 50.00% 7 2 TAIR8 Avg. embryo expression (dissected): '63.6245'
Avg. embryo expression (LCM): '67.7786'
AT5G53160 RCAR3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.46586 x 10-1 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53160 RCAR3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.7097 x 10-1 27 11 71.05% 38 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53160 RCAR3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.32672 x 10-1 14 2 87.50% 16 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53150 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.04927 x 10-1 3 6 6 5 33.33% 45.45% 9 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.296306'
Avg. expression score for this sample: '241.254'
Avg. expression score in LCM sample: '56.2636'
Tissue used: 'pure endosperm, no chalazal'
AT5G53150 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.65708 x 10-1 27 13 26 40 67.50% 60.61% 40 66 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.296306'
Avg. expression score for this sample: '260.35'
Avg. expression score in LCM sample: '56.2636'
Tissue used: 'full endosperm'
AT5G53150 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.40071 x 10-1 6 4 0 4 60.00% 100.00% 10 4 TAIR8 Avg. embryo expression (dissected): '288.467'
Avg. embryo expression (LCM): '118.277'
AT5G53150 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.8456 x 10-2 9 1 90.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53150 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.69597 x 10-1 301 175 63.24% 476 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53150 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.481 x 10-3 171 56 75.33% 227 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53144 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '2.61648'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G53144 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '5.11619'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G53144 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '2.96247'
Avg. embryo expression (LCM): '0'
AT5G53144 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53144 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53144 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53140 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.73049 x 10-1 324 211 139 336 60.56% 70.74% 535 475 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '5.4e-07'
Avg. expression score for this sample: '1039.11'
Avg. expression score in LCM sample: '189.53'
Tissue used: 'pure endosperm, no chalazal'
AT5G53140 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.3 x 10-11 630 255 212 882 71.19% 80.62% 885 1094 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '5.4e-07'
Avg. expression score for this sample: '1334.38'
Avg. expression score in LCM sample: '189.53'
Tissue used: 'full endosperm'
AT5G53140 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.15296 x 10-1 389 442 132 265 46.81% 66.75% 831 397 TAIR8 Avg. embryo expression (dissected): '1953.24'
Avg. embryo expression (LCM): '959.5'
AT5G53140 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.438 x 10-3 160 35 82.05% 195 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53140 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.5 x 10-12 2206 537 80.42% 2743 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53140 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 1983 179 91.72% 2162 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53130 CNGC1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.8267 x 10-1 148 58 58 113 71.84% 66.08% 206 171 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.8e-09'
Avg. expression score for this sample: '31.2198'
Avg. expression score in LCM sample: '12.2287'
Tissue used: 'pure endosperm, no chalazal'
AT5G53130 CNGC1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.4 x 10-11 380 109 100 431 77.71% 81.17% 489 531 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.8e-09'
Avg. expression score for this sample: '53.9752'
Avg. expression score in LCM sample: '12.2287'
Tissue used: 'full endosperm'
AT5G53130 CNGC1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.84774 x 10-1 169 160 34 47 51.37% 58.02% 329 81 TAIR8 Avg. embryo expression (dissected): '48.5605'
Avg. embryo expression (LCM): '18.9886'
AT5G53130 CNGC1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.515 x 10-3 110 14 88.71% 124 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53130 CNGC1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 9.4 x 10-20 890 91 90.72% 981 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53130 CNGC1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.4 x 10-26 946 79 92.29% 1025 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53120 SPDS3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.5843 x 10-2 95 25 26 74 79.17% 74.00% 120 100 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1.4e-12'
Avg. expression score for this sample: '171.051'
Avg. expression score in LCM sample: '101.225'
Tissue used: 'pure endosperm, no chalazal'
AT5G53120 SPDS3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.1 x 10-12 266 40 70 275 86.93% 79.71% 306 345 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1.4e-12'
Avg. expression score for this sample: '302.675'
Avg. expression score in LCM sample: '101.225'
Tissue used: 'full endosperm'
AT5G53120 SPDS3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.9893 x 10-2 93 52 22 18 64.14% 45.00% 145 40 TAIR8 Avg. embryo expression (dissected): '198.042'
Avg. embryo expression (LCM): '146.383'
AT5G53120 SPDS3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.75 x 10-4 129 10 92.81% 139 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53120 SPDS3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.7 x 10-16 546 25 95.62% 571 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53120 SPDS3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 1290 47 96.48% 1337 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53110 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 0 0 0 100.00% 2 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.64472'
Avg. expression score for this sample: '3.20197'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G53110 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.35117 x 10-1 1 0 2 8 100.00% 80.00% 1 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.64472'
Avg. expression score for this sample: '10.2403'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G53110 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 2.14286 x 10-1 4 0 0 0 100.00% 4 0 TAIR8 Avg. embryo expression (dissected): '16.6412'
Avg. embryo expression (LCM): '1.74564'
AT5G53110 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53110 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.21053 x 10-1 7 0 100.00% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53110 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.7931 x 10-1 17 0 100.00% 17 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53100 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.25629 x 10-1 84 9 34 36 90.32% 51.43% 93 70 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.017963'
Avg. expression score for this sample: '210.353'
Avg. expression score in LCM sample: '426.886'
Tissue used: 'pure endosperm, no chalazal'
AT5G53100 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.8686 x 10-2 42 1 10 18 97.67% 64.29% 43 28 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.017963'
Avg. expression score for this sample: '126.622'
Avg. expression score in LCM sample: '426.886'
Tissue used: 'full endosperm'
AT5G53100 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.00323 x 10-1 6 1 2 2 85.71% 50.00% 7 4 TAIR8 Avg. embryo expression (dissected): '22.2233'
Avg. embryo expression (LCM): '4.62156'
AT5G53100 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.4018 x 10-2 12 0 100.00% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53100 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.42032 x 10-1 6 0 100.00% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53100 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.2 x 10-6 69 1 98.57% 70 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53090 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.69723 x 10-1 33 21 35 46 61.11% 56.79% 54 81 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.758477'
Avg. expression score for this sample: '77.0029'
Avg. expression score in LCM sample: '65.4792'
Tissue used: 'pure endosperm, no chalazal'
AT5G53090 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.43102 x 10-1 70 14 53 113 83.33% 68.07% 84 166 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.758477'
Avg. expression score for this sample: '84.2508'
Avg. expression score in LCM sample: '65.4792'
Tissue used: 'full endosperm'
AT5G53090 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.27243 x 10-1 17 13 6 6 56.67% 50.00% 30 12 TAIR8 Avg. embryo expression (dissected): '35.5632'
Avg. embryo expression (LCM): '22.191'
AT5G53090 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.41632 x 10-1 12 10 54.55% 22 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53090 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.85311 x 10-1 4 3 57.14% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53090 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.2757 x 10-2 22 3 88.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53080 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 4 1 0 1 80.00% 100.00% 5 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.287107'
Avg. expression score for this sample: '4.60219'
Avg. expression score in LCM sample: '4.62984'
Tissue used: 'pure endosperm, no chalazal'
AT5G53080 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.84447 x 10-1 11 4 2 14 73.33% 87.50% 15 16 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.287107'
Avg. expression score for this sample: '12.775'
Avg. expression score in LCM sample: '4.62984'
Tissue used: 'full endosperm'
AT5G53080 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 4 4 2 0 50.00% 0.00% 8 2 TAIR8 Avg. embryo expression (dissected): '13.4425'
Avg. embryo expression (LCM): '27.6917'
AT5G53080 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.10526 x 10-1 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53080 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.24226 x 10-1 7 3 70.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53080 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 20 4 83.33% 24 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53070 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '29.8766'
Avg. expression score in LCM sample: '22.2967'
Tissue used: 'pure endosperm, no chalazal'
AT5G53070 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '102.432'
Avg. expression score in LCM sample: '22.2967'
Tissue used: 'full endosperm'
AT5G53070 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '86.2967'
Avg. embryo expression (LCM): '189.27'
AT5G53070 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53070 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53070 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53060 RCF3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 3 2 5 40.00% 71.43% 5 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '35.403'
Avg. expression score in LCM sample: '20.4154'
Tissue used: 'pure endosperm, no chalazal'
AT5G53060 RCF3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 23 24 18 61 48.94% 77.22% 47 79 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '59.7593'
Avg. expression score in LCM sample: '20.4154'
Tissue used: 'full endosperm'
AT5G53060 RCF3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.51186 x 10-1 7 10 2 1 41.18% 33.33% 17 3 TAIR8 Avg. embryo expression (dissected): '58.1685'
Avg. embryo expression (LCM): '44.3569'
AT5G53060 RCF3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.50771 x 10-1 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53060 RCF3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 30 16 65.22% 46 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53060 RCF3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.1 x 10-6 79 7 91.86% 86 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53050 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.67006 x 10-1 15 5 5 16 75.00% 76.19% 20 21 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.058978'
Avg. expression score for this sample: '18.1729'
Avg. expression score in LCM sample: '10.4943'
Tissue used: 'pure endosperm, no chalazal'
AT5G53050 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.36922 x 10-1 54 11 15 32 83.08% 68.09% 65 47 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.058978'
Avg. expression score for this sample: '32.3991'
Avg. expression score in LCM sample: '10.4943'
Tissue used: 'full endosperm'
AT5G53050 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.9679 x 10-2 20 4 4 3 83.33% 42.86% 24 7 TAIR8 Avg. embryo expression (dissected): '20.5571'
Avg. embryo expression (LCM): '8.96682'
AT5G53050 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.23964 x 10-1 8 3 72.73% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53050 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.13632 x 10-1 61 15 80.26% 76 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53050 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.32593 x 10-1 131 30 81.37% 161 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53048 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 7 0 3 0 100.00% 0.00% 7 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.467006'
Avg. expression score for this sample: '4.91787'
Avg. expression score in LCM sample: '7.01091'
Tissue used: 'pure endosperm, no chalazal'
AT5G53048 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.69956 x 10-1 19 0 7 5 100.00% 41.67% 19 12 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.467006'
Avg. expression score for this sample: '11.4424'
Avg. expression score in LCM sample: '7.01091'
Tissue used: 'full endosperm'
AT5G53048 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 2 1 0 0 66.67% 3 0 TAIR8 Avg. embryo expression (dissected): '1.84624'
Avg. embryo expression (LCM): '3.99363'
AT5G53048 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.718 x 10-3 0 4 0.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53048 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 20 6 76.92% 26 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53048 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.8644 x 10-2 30 1 96.77% 31 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53045 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.34259'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G53045 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 0 1 0 2 0.00% 100.00% 1 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.290154'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G53045 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.50403'
Avg. embryo expression (LCM): '10.9008'
AT5G53045 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53045 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 1 50.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53045 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53040 RKD4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.333872'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G53040 RKD4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.235583'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G53040 RKD4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G53040 RKD4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53040 RKD4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53040 RKD4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G53030 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '41.6625'
Avg. expression score in LCM sample: '61.0698'
Tissue used: 'pure endosperm, no chalazal'
AT5G53030 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '55.384'
Avg. expression score in LCM sample: '61.0698'
Tissue used: 'full endosperm'