| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G02885 | GASA5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02885 | GASA5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.284032' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G02885 | GASA5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02885 | GASA5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT3G02880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28571 x 10-1 | 0 | 1 | 2 | 0 | 0.00% | 0.00% | 1 | 2 | TAIR8 |
Avg. embryo expression (dissected): '202.785' Avg. embryo expression (LCM): '74.3091' |
||||
| AT3G02880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.96503 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 1 | 5 | 0.00% | 83.33% | 1 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '375.036' Avg. expression score in LCM sample: '90.0982' Tissue used: 'full endosperm' |
|||||
| AT3G02880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 0 | 1 | 0.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '150.642' Avg. expression score in LCM sample: '90.0982' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G02880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.38235 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.30769 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02875 | ILR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.7 x 10-5 | 113 | 5 | 95.76% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02875 | ILR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.5 x 10-28 | 446 | 1 | 99.78% | 447 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02875 | ILR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2 x 10-11 | 261 | 37 | 52 | 209 | 87.58% | 80.08% | 298 | 261 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.5e-11' Avg. expression score for this sample: '632.591' Avg. expression score in LCM sample: '47.2097' Tissue used: 'full endosperm' |
||||
| AT3G02875 | ILR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 65 | 14 | 82.28% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02875 | ILR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.39182 x 10-1 | 39 | 34 | 4 | 8 | 53.42% | 66.67% | 73 | 12 | TAIR8 |
Avg. embryo expression (dissected): '341.361' Avg. embryo expression (LCM): '176.084' |
|||
| AT3G02875 | ILR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.82247 x 10-1 | 46 | 26 | 9 | 51 | 63.89% | 85.00% | 72 | 60 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.5e-11' Avg. expression score for this sample: '283.883' Avg. expression score in LCM sample: '47.2097' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G02870 | VTC4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.13677 x 10-1 | 7 | 9 | 6 | 17 | 43.75% | 73.91% | 16 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '223.417' Avg. expression score in LCM sample: '103.15' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G02870 | VTC4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.33854 x 10-1 | 41 | 25 | 62.12% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02870 | VTC4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6795 x 10-2 | 141 | 37 | 79.21% | 178 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02870 | VTC4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.22208 x 10-1 | 10 | 16 | 3 | 4 | 38.46% | 57.14% | 26 | 7 | TAIR8 |
Avg. embryo expression (dissected): '236.611' Avg. embryo expression (LCM): '202.494' |
|||
| AT3G02870 | VTC4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.32619 x 10-1 | 15 | 4 | 78.95% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02870 | VTC4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.73627 x 10-1 | 10 | 18 | 16 | 67 | 35.71% | 80.72% | 28 | 83 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '160.58' Avg. expression score in LCM sample: '103.15' Tissue used: 'full endosperm' |
||||
| AT3G02860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.95678 x 10-1 | 150 | 16 | 85 | 32 | 90.36% | 27.35% | 166 | 117 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.604237' Avg. expression score for this sample: '165.738' Avg. expression score in LCM sample: '33.379' Tissue used: 'full endosperm' |
|||||
| AT3G02860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.11122 x 10-1 | 14 | 6 | 70.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02860 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.0688 x 10-2 | 72 | 15 | 29 | 2 | 82.76% | 6.45% | 87 | 31 | TAIR8 |
Avg. embryo expression (dissected): '111.367' Avg. embryo expression (LCM): '77.6874' |
||||
| AT3G02860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.92024 x 10-1 | 62 | 6 | 36 | 17 | 91.18% | 32.08% | 68 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.604237' Avg. expression score for this sample: '93.8317' Avg. expression score in LCM sample: '33.379' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G02860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.5 x 10-23 | 107 | 258 | 29.32% | 365 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02860 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 669 | 37 | 94.76% | 706 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02850 | SKOR | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02850 | SKOR | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02850 | SKOR | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.224707' Avg. embryo expression (LCM): '0' |
|||||
| AT3G02850 | SKOR | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02850 | SKOR | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.204715' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT3G02850 | SKOR | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G02840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.44444 x 10-1 | 2 | 0 | 0 | 3 | 100.00% | 100.00% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010311' Avg. expression score for this sample: '7.27024' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G02840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.85903 x 10-1 | 31 | 2 | 93.94% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02840 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.22369 x 10-1 | 44 | 11 | 80.00% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.6874 x 10-2 | 5 | 1 | 7 | 45 | 83.33% | 86.54% | 6 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010311' Avg. expression score for this sample: '35.5838' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT3G02840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02840 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 0 | 3 | 0 | 0 | 0.00% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.40173' Avg. embryo expression (LCM): '0' |
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| AT3G02830 | ZFN1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 0 | 1 | 0 | 100.00% | 0.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '32.895' Avg. embryo expression (LCM): '26.0339' |
|||
| AT3G02830 | ZFN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02830 | ZFN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.80579 x 10-1 | 7 | 1 | 2 | 12 | 87.50% | 85.71% | 8 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.033858' Avg. expression score for this sample: '73.7341' Avg. expression score in LCM sample: '20.0333' Tissue used: 'full endosperm' |
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| AT3G02830 | ZFN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.1 | 3 | 0 | 0 | 5 | 100.00% | 100.00% | 3 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.033858' Avg. expression score for this sample: '50.0119' Avg. expression score in LCM sample: '20.0333' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02830 | ZFN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 24 | 2 | 92.31% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02830 | ZFN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 17 | 2 | 89.47% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.62297 x 10-1 | 11 | 7 | 61.11% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.95588 x 10-1 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '22.2561' Avg. expression score in LCM sample: '16.8291' Tissue used: 'full endosperm' |
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| AT3G02820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G02820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 1 | 1 | 0 | 50.00% | 0.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '65.883' Avg. embryo expression (LCM): '53.9265' |
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| AT3G02820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 1 | 0 | 0 | 75.00% | 4 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '29.7964' Avg. expression score in LCM sample: '16.8291' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.40482 x 10-1 | 0 | 1 | 6 | 4 | 0.00% | 40.00% | 1 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.093783' Avg. expression score for this sample: '7.52853' Avg. expression score in LCM sample: '5.49702' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02810 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.32752 x 10-1 | 0 | 6 | 0.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.336 x 10-2 | 14 | 3 | 82.35% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02810 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '3.26495' Avg. embryo expression (LCM): '0' |
|||||
| AT3G02810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G02810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 1 | 2 | 0 | 66.67% | 0.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.093783' Avg. expression score for this sample: '1.8663' Avg. expression score in LCM sample: '5.49702' Tissue used: 'full endosperm' |
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| AT3G02800 | PFA-DSP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.1 x 10-14 | 258 | 25 | 33 | 150 | 91.17% | 81.97% | 283 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.2e-13' Avg. expression score for this sample: '104.042' Avg. expression score in LCM sample: '9.23029' Tissue used: 'full endosperm' |
||||
| AT3G02800 | PFA-DSP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.44953 x 10-1 | 35 | 2 | 94.59% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02800 | PFA-DSP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.50034 x 10-1 | 17 | 3 | 9 | 3 | 85.00% | 25.00% | 20 | 12 | TAIR8 |
Avg. embryo expression (dissected): '19.1012' Avg. embryo expression (LCM): '14.4549' |
|||
| AT3G02800 | PFA-DSP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.1817 x 10-1 | 42 | 6 | 16 | 20 | 87.50% | 55.56% | 48 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.2e-13' Avg. expression score for this sample: '28.8831' Avg. expression score in LCM sample: '9.23029' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02800 | PFA-DSP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.0 x 10-27 | 834 | 532 | 61.05% | 1366 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02800 | PFA-DSP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.91425 x 10-1 | 789 | 164 | 82.79% | 953 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.29 x 10-3 | 221 | 69 | 76.21% | 290 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.381 x 10-3 | 275 | 92 | 74.93% | 367 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.6434 x 10-2 | 148 | 39 | 72 | 10 | 79.14% | 12.20% | 187 | 82 | TAIR8 |
Avg. embryo expression (dissected): '289.292' Avg. embryo expression (LCM): '207.129' |
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| AT3G02790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.55939 x 10-1 | 68 | 30 | 69.39% | 98 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.52312 x 10-1 | 228 | 87 | 121 | 195 | 72.38% | 61.71% | 315 | 316 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.894778' Avg. expression score for this sample: '307.6' Avg. expression score in LCM sample: '79.1042' Tissue used: 'full endosperm' |
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| AT3G02790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 230 | 65 | 110 | 124 | 77.97% | 52.99% | 295 | 234 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.894778' Avg. expression score for this sample: '341.177' Avg. expression score in LCM sample: '79.1042' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02780 | IPP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.4749 x 10-1 | 19 | 9 | 3 | 15 | 67.86% | 83.33% | 28 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013518' Avg. expression score for this sample: '250.765' Avg. expression score in LCM sample: '92.7585' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02780 | IPP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.2393 x 10-2 | 74 | 10 | 88.10% | 84 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02780 | IPP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1 x 10-7 | 141 | 7 | 95.27% | 148 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02780 | IPP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.1477 x 10-2 | 58 | 23 | 35 | 131 | 71.60% | 78.92% | 81 | 166 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013518' Avg. expression score for this sample: '392.532' Avg. expression score in LCM sample: '92.7585' Tissue used: 'full endosperm' |
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| AT3G02780 | IPP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.45747 x 10-1 | 15 | 9 | 62.50% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G02780 | IPP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.8329 x 10-2 | 23 | 10 | 4 | 9 | 69.70% | 69.23% | 33 | 13 | TAIR8 |
Avg. embryo expression (dissected): '419.537' Avg. embryo expression (LCM): '252.39' |
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| AT3G02770 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 3 | 0 | 1 | 40.00% | 100.00% | 5 | 1 | TAIR8 |
Avg. embryo expression (dissected): '300.312' Avg. embryo expression (LCM): '84.4941' |
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| AT3G02770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.04444 x 10-1 | 5 | 2 | 71.43% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2952 x 10-2 | 21 | 3 | 6 | 36 | 87.50% | 85.71% | 24 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.050056' Avg. expression score for this sample: '252.016' Avg. expression score in LCM sample: '63.9947' Tissue used: 'full endosperm' |
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| AT3G02770 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.229 x 10-3 | 54 | 1 | 98.18% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.85714 x 10-1 | 1 | 2 | 1 | 0 | 33.33% | 0.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.050056' Avg. expression score for this sample: '269.472' Avg. expression score in LCM sample: '63.9947' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.98384 x 10-1 | 46 | 5 | 90.20% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.18539 x 10-1 | 263 | 95 | 73.46% | 358 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.0 x 10-5 | 246 | 56 | 81.46% | 302 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.88962 x 10-1 | 57 | 43 | 28 | 101 | 57.00% | 78.29% | 100 | 129 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.425177' Avg. expression score for this sample: '611.721' Avg. expression score in LCM sample: '262.49' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.32985 x 10-1 | 142 | 71 | 78 | 185 | 66.67% | 70.34% | 213 | 263 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.425177' Avg. expression score for this sample: '802.632' Avg. expression score in LCM sample: '262.49' Tissue used: 'full endosperm' |
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| AT3G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.57522 x 10-1 | 28 | 18 | 60.87% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02760 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.67124 x 10-1 | 77 | 97 | 20 | 26 | 44.25% | 56.52% | 174 | 46 | TAIR8 |
Avg. embryo expression (dissected): '858.435' Avg. embryo expression (LCM): '779.348' |
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| AT3G02750 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.9679 x 10-2 | 19 | 3 | 5 | 5 | 86.36% | 50.00% | 22 | 10 | TAIR8 |
Avg. embryo expression (dissected): '56.3273' Avg. embryo expression (LCM): '32.1751' |
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| AT3G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.03741 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.31253 x 10-1 | 17 | 6 | 9 | 19 | 73.91% | 67.86% | 23 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '57.6653' Avg. expression score in LCM sample: '16.7409' Tissue used: 'full endosperm' |
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| AT3G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.80788 x 10-1 | 13 | 5 | 6 | 4 | 72.22% | 40.00% | 18 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '36.7074' Avg. expression score in LCM sample: '16.7409' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.937 x 10-3 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.553 x 10-2 | 34 | 5 | 87.18% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '43.6662' Avg. expression score in LCM sample: '17.6375' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '85.2617' Avg. expression score in LCM sample: '17.6375' Tissue used: 'full endosperm' |
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| AT3G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G02740 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '45.1298' Avg. embryo expression (LCM): '51.2264' |