| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G04690 | ANX1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04690 | ANX1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04690 | ANX1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '40.3425' Avg. embryo expression (LCM): '64.953' |
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| AT3G04690 | ANX1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '22.5204' Avg. expression score in LCM sample: '21.8852' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04680 | CLPS3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.789294' Avg. expression score for this sample: '70.2227' Avg. expression score in LCM sample: '35.275' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04680 | CLPS3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.22289 x 10-1 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04680 | CLPS3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '85.8246' Avg. embryo expression (LCM): '54.6675' |
|||||
| AT3G04680 | CLPS3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04680 | CLPS3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.7802 | 2 | 3 | 5 | 21 | 40.00% | 80.77% | 5 | 26 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.789294' Avg. expression score for this sample: '60.5512' Avg. expression score in LCM sample: '35.275' Tissue used: 'full endosperm' |
||||
| AT3G04680 | CLPS3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.4366 x 10-2 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04670 | WRKY39 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.99797 x 10-1 | 111 | 39 | 74.00% | 150 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04670 | WRKY39 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.12372 x 10-1 | 18 | 14 | 56.25% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04670 | WRKY39 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.99286 x 10-1 | 60 | 70 | 16 | 12 | 46.15% | 42.86% | 130 | 28 | TAIR8 |
Avg. embryo expression (dissected): '279.329' Avg. embryo expression (LCM): '241.376' |
|||
| AT3G04670 | WRKY39 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.11432 x 10-1 | 100 | 38 | 58 | 130 | 72.46% | 69.15% | 138 | 188 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.322441' Avg. expression score for this sample: '151.087' Avg. expression score in LCM sample: '28.2494' Tissue used: 'full endosperm' |
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| AT3G04670 | WRKY39 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.60737 x 10-1 | 33 | 16 | 7 | 18 | 67.35% | 72.00% | 49 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.322441' Avg. expression score for this sample: '69.9268' Avg. expression score in LCM sample: '28.2494' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G04670 | WRKY39 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.395 x 10-3 | 170 | 38 | 81.73% | 208 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04660 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.93 x 10-4 | 28 | 1 | 96.55% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.08678 x 10-1 | 34 | 10 | 19 | 11 | 77.27% | 36.67% | 44 | 30 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.781341' Avg. expression score for this sample: '16.9639' Avg. expression score in LCM sample: '15.4034' Tissue used: 'full endosperm' |
|||||
| AT3G04660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.2 x 10-5 | 0 | 10 | 0.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.78512 x 10-1 | 48 | 29 | 62.34% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04660 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.00323 x 10-1 | 2 | 8 | 0 | 1 | 20.00% | 100.00% | 10 | 1 | TAIR8 |
Avg. embryo expression (dissected): '3.64404' Avg. embryo expression (LCM): '2.02193' |
||||
| AT3G04660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.12726 x 10-1 | 19 | 3 | 9 | 10 | 86.36% | 52.63% | 22 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.781341' Avg. expression score for this sample: '14.5937' Avg. expression score in LCM sample: '15.4034' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 0 | 0.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.1013' Avg. expression score in LCM sample: '.837781' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G04650 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.7926 x 10-2 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04650 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 2 | 0 | 0 | 60.00% | 5 | 0 | TAIR8 |
Avg. embryo expression (dissected): '52.894' Avg. embryo expression (LCM): '104.6' |
|||||
| AT3G04650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 1 | 2 | 0 | 85.71% | 0.00% | 7 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '15.0358' Avg. expression score in LCM sample: '.837781' Tissue used: 'full endosperm' |
|||||
| AT3G04650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.08791 x 10-1 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.2 x 10-15 | 231 | 3 | 98.72% | 234 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 114 | 25 | 82.01% | 139 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.61115 x 10-1 | 223 | 243 | 55 | 67 | 47.85% | 54.92% | 466 | 122 | TAIR8 |
Avg. embryo expression (dissected): '385.25' Avg. embryo expression (LCM): '108.293' |
||||
| AT3G04640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 410 | 104 | 63 | 664 | 79.77% | 91.33% | 514 | 727 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-29' Avg. expression score for this sample: '618.618' Avg. expression score in LCM sample: '20.8122' Tissue used: 'full endosperm' |
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| AT3G04640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.21 x 10-4 | 334 | 114 | 80 | 245 | 74.55% | 75.38% | 448 | 325 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-29' Avg. expression score for this sample: '367.041' Avg. expression score in LCM sample: '20.8122' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-16 | 388 | 14 | 96.52% | 402 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04630 | WDL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04630 | WDL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.8084 x 10-1 | 10 | 2 | 4 | 10 | 83.33% | 71.43% | 12 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.7378' Avg. expression score in LCM sample: '1.13174' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04630 | WDL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.99553 x 10-1 | 13 | 8 | 5 | 5 | 61.90% | 50.00% | 21 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.5787' Avg. expression score in LCM sample: '1.13174' Tissue used: 'full endosperm' |
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| AT3G04630 | WDL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04630 | WDL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.99899 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04630 | WDL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 59 | 62 | 21 | 24 | 48.76% | 53.33% | 121 | 45 | TAIR8 |
Avg. embryo expression (dissected): '132.436' Avg. embryo expression (LCM): '121.906' |
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| AT3G04620 | DAN1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '33.7457' Avg. embryo expression (LCM): '38.3037' |
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| AT3G04620 | DAN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04620 | DAN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.3593' Avg. expression score in LCM sample: '23.3991' Tissue used: 'full endosperm' |
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| AT3G04620 | DAN1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04620 | DAN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '52.7563' Avg. expression score in LCM sample: '23.3991' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04620 | DAN1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04610 | FLK | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-10 | 220 | 22 | 90.91% | 242 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04610 | FLK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.03074 x 10-1 | 206 | 65 | 80 | 122 | 76.01% | 60.40% | 271 | 202 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015622' Avg. expression score for this sample: '187.915' Avg. expression score in LCM sample: '75.2386' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04610 | FLK | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.531 x 10-3 | 104 | 18 | 85.25% | 122 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04610 | FLK | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.49419 x 10-1 | 36 | 15 | 70.59% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04610 | FLK | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.5712 x 10-2 | 190 | 116 | 84 | 62 | 62.09% | 42.47% | 306 | 146 | TAIR8 |
Avg. embryo expression (dissected): '312.426' Avg. embryo expression (LCM): '216.761' |
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| AT3G04610 | FLK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.477 x 10-3 | 122 | 36 | 35 | 116 | 77.22% | 76.82% | 158 | 151 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015622' Avg. expression score for this sample: '118.693' Avg. expression score in LCM sample: '75.2386' Tissue used: 'full endosperm' |
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| AT3G04600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '25.8099' Avg. expression score in LCM sample: '8.56888' Tissue used: 'full endosperm' |
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| AT3G04600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '36.2622' Avg. embryo expression (LCM): '55.2703' |
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| AT3G04600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '24.2951' Avg. expression score in LCM sample: '8.56888' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '138.314' Avg. expression score in LCM sample: '40.0518' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '146.304' Avg. embryo expression (LCM): '102.679' |
||||||
| AT3G04590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '61.8956' Avg. expression score in LCM sample: '40.0518' Tissue used: 'full endosperm' |
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| AT3G04590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04580 | EIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04580 | EIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04580 | EIN4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 2 | 1 | 1 | 33.33% | 50.00% | 3 | 2 | TAIR8 |
Avg. embryo expression (dissected): '52.4407' Avg. embryo expression (LCM): '57.895' |
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| AT3G04580 | EIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.64734 x 10-1 | 7 | 1 | 0 | 6 | 87.50% | 100.00% | 8 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.127386' Avg. expression score for this sample: '47.5305' Avg. expression score in LCM sample: '11.8465' Tissue used: 'full endosperm' |
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| AT3G04580 | EIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 1 | 0 | 2 | 75.00% | 100.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.127386' Avg. expression score for this sample: '18.4628' Avg. expression score in LCM sample: '11.8465' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04580 | EIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.16129 x 10-1 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04570 | AHL19 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04570 | AHL19 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 5 | 2 | 7 | 61.54% | 77.78% | 13 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '29.0373' Avg. expression score in LCM sample: '5.48232' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04570 | AHL19 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 1 | 0 | 1 | 66.67% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '22.219' Avg. expression score in LCM sample: '5.48232' Tissue used: 'full endosperm' |
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| AT3G04570 | AHL19 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04570 | AHL19 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G04570 | AHL19 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 12 | 17 | 7 | 10 | 41.38% | 58.82% | 29 | 17 | TAIR8 |
Avg. embryo expression (dissected): '114.415' Avg. embryo expression (LCM): '50.5357' |
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| AT3G04560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.36507 x 10-1 | 21 | 40 | 6 | 16 | 34.43% | 72.73% | 61 | 22 | TAIR8 |
Avg. embryo expression (dissected): '39.1535' Avg. embryo expression (LCM): '34.31' |
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| AT3G04560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.21492 x 10-1 | 24 | 6 | 80.00% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.123 x 10-3 | 45 | 9 | 15 | 75 | 83.33% | 83.33% | 54 | 90 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00823' Avg. expression score for this sample: '39.9818' Avg. expression score in LCM sample: '11.0381' Tissue used: 'full endosperm' |
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| AT3G04560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.50476 x 10-1 | 155 | 35 | 81.58% | 190 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.99694 x 10-1 | 30 | 31 | 9 | 64 | 49.18% | 87.67% | 61 | 73 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00823' Avg. expression score for this sample: '34.4385' Avg. expression score in LCM sample: '11.0381' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.8144 x 10-1 | 138 | 51 | 73.02% | 189 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5816 x 10-2 | 47 | 9 | 83.93% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 50 | 22 | 16 | 27 | 69.44% | 62.79% | 72 | 43 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.575113' Avg. expression score for this sample: '362.075' Avg. expression score in LCM sample: '205.815' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G04550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.97 x 10-4 | 43 | 3 | 93.48% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.13205 x 10-1 | 17 | 14 | 54.84% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G04550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 95 | 89 | 14 | 10 | 51.63% | 41.67% | 184 | 24 | TAIR8 |
Avg. embryo expression (dissected): '957.767' Avg. embryo expression (LCM): '773.922' |
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| AT3G04550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.9459 x 10-1 | 79 | 36 | 37 | 90 | 68.70% | 70.87% | 115 | 127 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.575113' Avg. expression score for this sample: '270.869' Avg. expression score in LCM sample: '205.815' Tissue used: 'full endosperm' |
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| AT3G04545 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G04545 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04545 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04545 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G04545 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G04545 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G04540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G04540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G04540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G04540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |