| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G08710 | TH9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.1 | 4 | 0 | 0 | 4 | 100.00% | 100.00% | 4 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002948' Avg. expression score for this sample: '108.436' Avg. expression score in LCM sample: '47.9446' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08710 | TH9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.1752 x 10-2 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08700 | UBC12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08700 | UBC12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 1 | 4 | 2 | 85.71% | 33.33% | 7 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.050056' Avg. expression score for this sample: '15.0488' Avg. expression score in LCM sample: '3.29233' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08700 | UBC12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.152 x 10-3 | 45 | 5 | 2 | 5 | 90.00% | 71.43% | 50 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.050056' Avg. expression score for this sample: '30.5833' Avg. expression score in LCM sample: '3.29233' Tissue used: 'full endosperm' |
||||
| AT3G08700 | UBC12 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.8149 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08700 | UBC12 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.37186 x 10-1 | 6 | 3 | 0 | 0 | 66.67% | 9 | 0 | TAIR8 |
Avg. embryo expression (dissected): '8.17859' Avg. embryo expression (LCM): '0' |
||||
| AT3G08700 | UBC12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08690 | UBC11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.60711 x 10-1 | 25 | 13 | 65.79% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08690 | UBC11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4406 x 10-2 | 145 | 49 | 63 | 182 | 74.74% | 74.29% | 194 | 245 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034792' Avg. expression score for this sample: '427.566' Avg. expression score in LCM sample: '61.9811' Tissue used: 'full endosperm' |
||||
| AT3G08690 | UBC11 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.39937 x 10-1 | 49 | 44 | 18 | 30 | 52.69% | 62.50% | 93 | 48 | TAIR8 |
Avg. embryo expression (dissected): '292.542' Avg. embryo expression (LCM): '142.226' |
|||
| AT3G08690 | UBC11 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.2 x 10-8 | 293 | 45 | 86.69% | 338 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08690 | UBC11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.57795 x 10-1 | 77 | 54 | 37 | 115 | 58.78% | 75.66% | 131 | 152 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034792' Avg. expression score for this sample: '314.026' Avg. expression score in LCM sample: '61.9811' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G08690 | UBC11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.87831 x 10-1 | 199 | 85 | 70.07% | 284 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.45744 x 10-1 | 48 | 13 | 78.69% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.42242 x 10-1 | 112 | 67 | 43 | 148 | 62.57% | 77.49% | 179 | 191 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.284554' Avg. expression score for this sample: '612.371' Avg. expression score in LCM sample: '558.433' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G08680 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.4 x 10-7 | 105 | 11 | 90.52% | 116 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.883 x 10-3 | 71 | 12 | 85.54% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08680 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.24987 x 10-1 | 48 | 71 | 28 | 21 | 40.34% | 42.86% | 119 | 49 | TAIR8 |
Avg. embryo expression (dissected): '830.41' Avg. embryo expression (LCM): '549.563' |
||||
| AT3G08680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.52525 x 10-1 | 88 | 40 | 48 | 106 | 68.75% | 68.83% | 128 | 154 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.284554' Avg. expression score for this sample: '422.576' Avg. expression score in LCM sample: '558.433' Tissue used: 'full endosperm' |
|||||
| AT3G08670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.74199 x 10-1 | 100 | 23 | 62 | 58 | 81.30% | 48.33% | 123 | 120 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.286778' Avg. expression score for this sample: '595.709' Avg. expression score in LCM sample: '234.211' Tissue used: 'full endosperm' |
|||||
| AT3G08670 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-24 | 316 | 25 | 92.67% | 341 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08670 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.92771 x 10-1 | 70 | 60 | 38 | 37 | 53.85% | 49.33% | 130 | 75 | TAIR8 |
Avg. embryo expression (dissected): '1033.04' Avg. embryo expression (LCM): '357.103' |
||||
| AT3G08670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.0387 x 10-1 | 19 | 7 | 73.08% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.65706 x 10-1 | 108 | 21 | 76 | 48 | 83.72% | 38.71% | 129 | 124 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.286778' Avg. expression score for this sample: '848.968' Avg. expression score in LCM sample: '234.211' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G08670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-5 | 96 | 19 | 83.48% | 115 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 18 | 2 | 90.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.440827' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G08660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.829469' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G08660 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.33099' Avg. embryo expression (LCM): '0' |
|||||
| AT3G08660 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 25 | 0 | 100.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08650 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.94737 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08650 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '373.152' Avg. embryo expression (LCM): '124.882' |
||||||
| AT3G08650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 5 | 0 | 5 | 50.00% | 100.00% | 10 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.733222' Avg. expression score for this sample: '211.678' Avg. expression score in LCM sample: '228.479' Tissue used: 'full endosperm' |
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| AT3G08650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.4 | 0 | 2 | 1 | 0 | 0.00% | 0.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.733222' Avg. expression score for this sample: '609.613' Avg. expression score in LCM sample: '228.479' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G08650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.17182 x 10-1 | 39 | 11 | 78.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 0 | 0 | 1 | 100.00% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01013' Avg. expression score for this sample: '294.914' Avg. expression score in LCM sample: '163.647' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G08640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.6874 x 10-2 | 14 | 6 | 2 | 36 | 70.00% | 94.74% | 20 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01013' Avg. expression score for this sample: '484.769' Avg. expression score in LCM sample: '163.647' Tissue used: 'full endosperm' |
|||||
| AT3G08640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.36369 x 10-1 | 72 | 4 | 94.74% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '512.056' Avg. embryo expression (LCM): '511.837' |
|||||
| AT3G08640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08636 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08636 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G08636 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G08636 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08636 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G08636 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '294.449' Avg. expression score in LCM sample: '194.836' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G08630 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08630 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '420.079' Avg. embryo expression (LCM): '248.823' |
||||||
| AT3G08630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '555.951' Avg. expression score in LCM sample: '194.836' Tissue used: 'full endosperm' |
|||||||
| AT3G08620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6 x 10-7 | 138 | 75 | 27 | 290 | 64.79% | 91.48% | 213 | 317 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-12' Avg. expression score for this sample: '250.312' Avg. expression score in LCM sample: '66.4346' Tissue used: 'full endosperm' |
|||||
| AT3G08620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.3091 x 10-1 | 134 | 23 | 85.35% | 157 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08620 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.99502 x 10-1 | 51 | 50 | 9 | 13 | 50.50% | 59.09% | 101 | 22 | TAIR8 |
Avg. embryo expression (dissected): '224.697' Avg. embryo expression (LCM): '200.184' |
||||
| AT3G08620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0001 | 51 | 29 | 63.75% | 80 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.1 x 10-8 | 37 | 6 | 3 | 95 | 86.05% | 96.94% | 43 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-12' Avg. expression score for this sample: '213.779' Avg. expression score in LCM sample: '66.4346' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G08620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.99042 x 10-1 | 105 | 23 | 82.03% | 128 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '438.525' Avg. expression score in LCM sample: '169.923' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G08610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '572.924' Avg. expression score in LCM sample: '169.923' Tissue used: 'full endosperm' |
|||||||
| AT3G08610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '534.005' Avg. embryo expression (LCM): '450.074' |
||||||
| AT3G08610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08600 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.7 x 10-10 | 90 | 6 | 93.75% | 96 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.44259 x 10-1 | 15 | 6 | 71.43% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08600 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.8582 x 10-2 | 219 | 167 | 73 | 77 | 56.74% | 51.33% | 386 | 150 | TAIR8 |
Avg. embryo expression (dissected): '243.378' Avg. embryo expression (LCM): '93.1595' |
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| AT3G08600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.12673 x 10-1 | 63 | 19 | 45 | 58 | 76.83% | 56.31% | 82 | 103 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.558482' Avg. expression score for this sample: '61.646' Avg. expression score in LCM sample: '50.3992' Tissue used: 'full endosperm' |
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| AT3G08600 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.72095 x 10-1 | 125 | 67 | 54 | 94 | 65.10% | 63.51% | 192 | 148 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.558482' Avg. expression score for this sample: '101.753' Avg. expression score in LCM sample: '50.3992' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08600 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.59622 x 10-1 | 121 | 68 | 64.02% | 189 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08590 | iPGAM2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08590 | iPGAM2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3131.05' Avg. expression score in LCM sample: '1390.25' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08590 | iPGAM2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.54545 x 10-1 | 4 | 0 | 0 | 2 | 100.00% | 100.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2698.08' Avg. expression score in LCM sample: '1390.25' Tissue used: 'full endosperm' |
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| AT3G08590 | iPGAM2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08590 | iPGAM2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '6933.25' Avg. embryo expression (LCM): '4411.7' |
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| AT3G08590 | iPGAM2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08580 | AAC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.75686 x 10-1 | 42 | 25 | 62.69% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08580 | AAC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.7374 x 10-2 | 150 | 37 | 84 | 172 | 80.21% | 67.19% | 187 | 256 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.149218' Avg. expression score for this sample: '1743.79' Avg. expression score in LCM sample: '2167.34' Tissue used: 'full endosperm' |
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| AT3G08580 | AAC1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.44053 x 10-1 | 445 | 356 | 116 | 80 | 55.56% | 40.82% | 801 | 196 | TAIR8 |
Avg. embryo expression (dissected): '3283.48' Avg. embryo expression (LCM): '4891.47' |
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| AT3G08580 | AAC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-24 | 563 | 63 | 89.94% | 626 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08580 | AAC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.74538 x 10-1 | 288 | 114 | 110 | 178 | 71.64% | 61.81% | 402 | 288 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.149218' Avg. expression score for this sample: '2090.5' Avg. expression score in LCM sample: '2167.34' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08580 | AAC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.9548 | 376 | 166 | 69.37% | 542 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3.50708' Avg. expression score in LCM sample: '5.59991' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '21.392' Avg. embryo expression (LCM): '17.7829' |
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| AT3G08570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.44418' Avg. expression score in LCM sample: '5.59991' Tissue used: 'full endosperm' |
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| AT3G08560 | VHA-E2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '10.7112' Avg. expression score in LCM sample: '2.0871' Tissue used: 'full endosperm' |
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| AT3G08560 | VHA-E2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08560 | VHA-E2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '13.4272' Avg. embryo expression (LCM): '1.78332' |
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| AT3G08560 | VHA-E2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08560 | VHA-E2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '11.7765' Avg. expression score in LCM sample: '2.0871' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08560 | VHA-E2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08550 | KOB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.3878 x 10-2 | 12 | 3 | 80.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08550 | KOB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.63967 x 10-1 | 6 | 4 | 10 | 6 | 60.00% | 37.50% | 10 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.266298' Avg. expression score for this sample: '35.7946' Avg. expression score in LCM sample: '14.6832' Tissue used: 'pure endosperm, no chalazal' |