| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G09032 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.14994' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G09032 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09032 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.19439' Avg. embryo expression (LCM): '11.3781' |
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| AT3G09032 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '69.4467' Avg. expression score in LCM sample: '34.9369' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G09030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '41.6275' Avg. embryo expression (LCM): '22.5678' |
||||||
| AT3G09030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '81.7887' Avg. expression score in LCM sample: '34.9369' Tissue used: 'full endosperm' |
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| AT3G09030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G09020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G09020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G09020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G09010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.0643' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G09010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.56698' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G09010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G09010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '6.90498' Avg. embryo expression (LCM): '2.96382' |
||||||
| AT3G09010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G09000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.71429 x 10-1 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G09000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 1 | 33.33% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.352' Avg. expression score in LCM sample: '14.5362' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G09000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G09000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 9 | 8 | 3 | 4 | 52.94% | 57.14% | 17 | 7 | TAIR8 |
Avg. embryo expression (dissected): '75.9425' Avg. embryo expression (LCM): '47.2956' |
||||
| AT3G09000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 0 | 1 | 50.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '24.2063' Avg. expression score in LCM sample: '14.5362' Tissue used: 'full endosperm' |
|||||
| AT3G09000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08990 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '216.67' Avg. embryo expression (LCM): '53.9014' |
||||||
| AT3G08990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.10132 x 10-1 | 9 | 2 | 5 | 18 | 81.82% | 78.26% | 11 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.282283' Avg. expression score for this sample: '182.163' Avg. expression score in LCM sample: '49.4438' Tissue used: 'full endosperm' |
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| AT3G08990 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 2 | 85.71% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.48356 x 10-1 | 21 | 4 | 84.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.282283' Avg. expression score for this sample: '113.362' Avg. expression score in LCM sample: '49.4438' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '14.7947' Avg. expression score in LCM sample: '5.6146' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G08980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '33.1354' Avg. expression score in LCM sample: '5.6146' Tissue used: 'full endosperm' |
|||||||
| AT3G08980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '47.2038' Avg. embryo expression (LCM): '33.5565' |
|||||
| AT3G08980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08970 | ATERDJ3A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-16 | 494 | 34 | 93.56% | 528 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08970 | ATERDJ3A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.809 x 10-3 | 170 | 27 | 86.29% | 197 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08970 | ATERDJ3A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.0572 x 10-2 | 130 | 41 | 52 | 135 | 76.02% | 72.19% | 171 | 187 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.3e-10' Avg. expression score for this sample: '708.545' Avg. expression score in LCM sample: '62.3045' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08970 | ATERDJ3A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.41059 x 10-1 | 79 | 57 | 42 | 38 | 58.09% | 47.50% | 136 | 80 | TAIR8 |
Avg. embryo expression (dissected): '907.587' Avg. embryo expression (LCM): '24.753' |
|||
| AT3G08970 | ATERDJ3A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4 x 10-9 | 248 | 73 | 84 | 385 | 77.26% | 82.09% | 321 | 469 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.3e-10' Avg. expression score for this sample: '962.135' Avg. expression score in LCM sample: '62.3045' Tissue used: 'full endosperm' |
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| AT3G08970 | ATERDJ3A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.8094 x 10-2 | 94 | 13 | 87.85% | 107 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.7758 x 10-2 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08960 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.77512 x 10-1 | 10 | 7 | 4 | 4 | 58.82% | 50.00% | 17 | 8 | TAIR8 |
Avg. embryo expression (dissected): '224.18' Avg. embryo expression (LCM): '221.797' |
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| AT3G08960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 28 | 17 | 22 | 49 | 62.22% | 69.01% | 45 | 71 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '129.279' Avg. expression score in LCM sample: '171.877' Tissue used: 'full endosperm' |
|||||
| AT3G08960 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.0637 x 10-2 | 55 | 13 | 80.88% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 5 | 4 | 11 | 68.75% | 73.33% | 16 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '163.128' Avg. expression score in LCM sample: '171.877' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.9821 x 10-1 | 88 | 36 | 70.97% | 124 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08950 | HCC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08950 | HCC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.31803' Avg. expression score in LCM sample: '10.656' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08950 | HCC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 1 | 4 | 100.00% | 80.00% | 1 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.7653' Avg. expression score in LCM sample: '10.656' Tissue used: 'full endosperm' |
||||
| AT3G08950 | HCC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08950 | HCC1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 4 | 0 | 0 | 33.33% | 6 | 0 | TAIR8 |
Avg. embryo expression (dissected): '14.5324' Avg. embryo expression (LCM): '35.4905' |
||||
| AT3G08950 | HCC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.61538 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08940 | LHCB4.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.75407 x 10-1 | 68 | 34 | 66.67% | 102 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08940 | LHCB4.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.12886 x 10-1 | 716 | 371 | 308 | 607 | 65.87% | 66.34% | 1087 | 915 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.056921' Avg. expression score for this sample: '416.474' Avg. expression score in LCM sample: '110.881' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G08940 | LHCB4.2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.23881 x 10-1 | 30 | 13 | 69.77% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08940 | LHCB4.2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.515 x 10-3 | 1099 | 1125 | 429 | 689 | 49.42% | 61.63% | 2224 | 1118 | TAIR8 |
Avg. embryo expression (dissected): '1134.06' Avg. embryo expression (LCM): '342.121' |
|||
| AT3G08940 | LHCB4.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.745 x 10-3 | 403 | 238 | 242 | 369 | 62.87% | 60.39% | 641 | 611 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.056921' Avg. expression score for this sample: '186.035' Avg. expression score in LCM sample: '110.881' Tissue used: 'full endosperm' |
||||
| AT3G08940 | LHCB4.2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.71059 x 10-1 | 80 | 54 | 59.70% | 134 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.26806 x 10-1 | 17 | 7 | 70.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.21898 x 10-1 | 72 | 77 | 28 | 30 | 48.32% | 51.72% | 149 | 58 | TAIR8 |
Avg. embryo expression (dissected): '103.648' Avg. embryo expression (LCM): '72.2997' |
||||
| AT3G08930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.44517 x 10-1 | 77 | 29 | 47 | 107 | 72.64% | 69.48% | 106 | 154 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.733977' Avg. expression score for this sample: '82.396' Avg. expression score in LCM sample: '74.7095' Tissue used: 'full endosperm' |
|||||
| AT3G08930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.4 x 10-17 | 270 | 22 | 92.47% | 292 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.2 x 10-7 | 101 | 11 | 90.18% | 112 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.95339 x 10-1 | 78 | 57 | 25 | 71 | 57.78% | 73.96% | 135 | 96 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.733977' Avg. expression score for this sample: '96.2309' Avg. expression score in LCM sample: '74.7095' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.438433' Avg. expression score for this sample: '8.66807' Avg. expression score in LCM sample: '5.29125' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G08920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.81659 x 10-1 | 8 | 1 | 2 | 4 | 88.89% | 66.67% | 9 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.438433' Avg. expression score for this sample: '13.4038' Avg. expression score in LCM sample: '5.29125' Tissue used: 'full endosperm' |
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| AT3G08920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 5 | 1 | 0 | 50.00% | 0.00% | 10 | 1 | TAIR8 |
Avg. embryo expression (dissected): '40.3935' Avg. embryo expression (LCM): '18.0969' |
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| AT3G08920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.1 x 10-5 | 67 | 4 | 94.37% | 71 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.94724 x 10-1 | 32 | 15 | 68.09% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.61663 x 10-1 | 23 | 9 | 17 | 24 | 71.88% | 58.54% | 32 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.250545' Avg. expression score for this sample: '142.424' Avg. expression score in LCM sample: '48.5766' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.11392 x 10-1 | 15 | 10 | 1 | 5 | 60.00% | 83.33% | 25 | 6 | TAIR8 |
Avg. embryo expression (dissected): '97.4844' Avg. embryo expression (LCM): '90.7357' |
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| AT3G08910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.8833 x 10-2 | 66 | 11 | 23 | 43 | 85.71% | 65.15% | 77 | 66 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.250545' Avg. expression score for this sample: '117.143' Avg. expression score in LCM sample: '48.5766' Tissue used: 'full endosperm' |
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| AT3G08910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.50191 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08900 | RGP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.92 x 10-4 | 140 | 125 | 52.83% | 265 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08900 | RGP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.065 x 10-3 | 142 | 52 | 41 | 27 | 73.20% | 39.71% | 194 | 68 | TAIR8 |
Avg. embryo expression (dissected): '743.342' Avg. embryo expression (LCM): '274.317' |
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| AT3G08900 | RGP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.9 x 10-19 | 1607 | 369 | 2027 | 1796 | 81.33% | 46.98% | 1976 | 3823 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.2e-08' Avg. expression score for this sample: '2863.49' Avg. expression score in LCM sample: '19466.5' Tissue used: 'full endosperm' |
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| AT3G08900 | RGP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1 x 10-8 | 180 | 41 | 81.45% | 221 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08900 | RGP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.07272 x 10-1 | 2908 | 864 | 1350 | 1690 | 77.09% | 55.59% | 3772 | 3040 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.2e-08' Avg. expression score for this sample: '10228.8' Avg. expression score in LCM sample: '19466.5' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08900 | RGP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.35733 x 10-1 | 15 | 10 | 60.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G08890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.71796 x 10-1 | 359 | 74 | 82.91% | 433 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.41863 x 10-1 | 20 | 15 | 6 | 47 | 57.14% | 88.68% | 35 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000011' Avg. expression score for this sample: '56.524' Avg. expression score in LCM sample: '29.5134' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.6 x 10-5 | 41 | 26 | 32 | 217 | 61.19% | 87.15% | 67 | 249 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000011' Avg. expression score for this sample: '135.11' Avg. expression score in LCM sample: '29.5134' Tissue used: 'full endosperm' |
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| AT3G08890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.9236 x 10-2 | 40 | 3 | 93.02% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 16 | 27 | 1 | 10 | 37.21% | 90.91% | 43 | 11 | TAIR8 |
Avg. embryo expression (dissected): '59.9835' Avg. embryo expression (LCM): '47.2705' |
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| AT3G08890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-5 | 246 | 21 | 92.13% | 267 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.04 x 10-4 | 54 | 7 | 88.52% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.80129 x 10-1 | 7 | 8 | 4 | 5 | 46.67% | 55.56% | 15 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.754055' Avg. expression score for this sample: '27.724' Avg. expression score in LCM sample: '7.37835' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G08880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0732 x 10-2 | 20 | 2 | 90.91% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G08880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.77213 x 10-1 | 6 | 16 | 3 | 3 | 27.27% | 50.00% | 22 | 6 | TAIR8 |
Avg. embryo expression (dissected): '63.7726' Avg. embryo expression (LCM): '60.457' |
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| AT3G08880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 8 | 13 | 8 | 36 | 38.10% | 81.82% | 21 | 44 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.754055' Avg. expression score for this sample: '56.2534' Avg. expression score in LCM sample: '7.37835' Tissue used: 'full endosperm' |
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| AT3G08880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.357 x 10-3 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |