| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G10260 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.11563 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10260 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.50839 x 10-1 | 12 | 2 | 7 | 18 | 85.71% | 72.00% | 14 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.820169' Avg. expression score for this sample: '68.2109' Avg. expression score in LCM sample: '60.1586' Tissue used: 'full endosperm' |
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| AT3G10260 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 0 | 0 | 66.67% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '29.0152' Avg. embryo expression (LCM): '31.2834' |
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| AT3G10260 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.18245 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10260 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.5671 | 1 | 1 | 3 | 1 | 50.00% | 25.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.820169' Avg. expression score for this sample: '56.2768' Avg. expression score in LCM sample: '60.1586' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G10260 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.8098 x 10-2 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-9 | 149 | 9 | 94.30% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.33736 x 10-1 | 23 | 15 | 13 | 25 | 60.53% | 65.79% | 38 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.250044' Avg. expression score for this sample: '102.725' Avg. expression score in LCM sample: '41.8156' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G10250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 10 | 13 | 4 | 5 | 43.48% | 55.56% | 23 | 9 | TAIR8 |
Avg. embryo expression (dissected): '76.2586' Avg. embryo expression (LCM): '37.5125' |
||||
| AT3G10250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.3025 x 10-2 | 26 | 2 | 92.86% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.085 x 10-2 | 47 | 26 | 18 | 89 | 64.38% | 83.18% | 73 | 107 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.250044' Avg. expression score for this sample: '257.946' Avg. expression score in LCM sample: '41.8156' Tissue used: 'full endosperm' |
|||||
| AT3G10250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.9 x 10-7 | 100 | 6 | 94.34% | 106 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 7 | 63.16% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.445687' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G10240 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 2 | 0 | 100.00% | 0.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.05979' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT3G10240 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.4967' Avg. embryo expression (LCM): '0' |
||||||
| AT3G10240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G10230 | LYC | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.1191 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10230 | LYC | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.7371 x 10-2 | 16 | 4 | 2 | 27 | 80.00% | 93.10% | 20 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.203446' Avg. expression score for this sample: '130.259' Avg. expression score in LCM sample: '36.686' Tissue used: 'full endosperm' |
||||
| AT3G10230 | LYC | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.3194 x 10-2 | 19 | 7 | 1 | 7 | 73.08% | 87.50% | 26 | 8 | TAIR8 |
Avg. embryo expression (dissected): '109.214' Avg. embryo expression (LCM): '85.0844' |
|||
| AT3G10230 | LYC | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.3957 x 10-2 | 66 | 9 | 88.00% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10230 | LYC | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4434 x 10-2 | 70 | 7 | 90.91% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10230 | LYC | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.49897 x 10-1 | 4 | 6 | 5 | 8 | 40.00% | 61.54% | 10 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.203446' Avg. expression score for this sample: '70.5165' Avg. expression score in LCM sample: '36.686' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G10220 | EMB2804 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '84.497' Avg. expression score in LCM sample: '53.2358' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G10220 | EMB2804 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10220 | EMB2804 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '95.2138' Avg. embryo expression (LCM): '114.936' |
||||
| AT3G10220 | EMB2804 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.25 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10220 | EMB2804 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '127.079' Avg. expression score in LCM sample: '53.2358' Tissue used: 'full endosperm' |
||||
| AT3G10220 | EMB2804 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.96429 x 10-1 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.263 x 10-3 | 96 | 22 | 81.36% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10210 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-5 | 67 | 6 | 91.78% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.95985 x 10-1 | 24 | 12 | 16 | 21 | 66.67% | 56.76% | 36 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.916073' Avg. expression score for this sample: '71.0026' Avg. expression score in LCM sample: '50.8401' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.05441 x 10-1 | 50 | 16 | 22 | 43 | 75.76% | 66.15% | 66 | 65 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.916073' Avg. expression score for this sample: '82.0003' Avg. expression score in LCM sample: '50.8401' Tissue used: 'full endosperm' |
|||||
| AT3G10210 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 10 | 3 | 3 | 44.44% | 50.00% | 18 | 6 | TAIR8 |
Avg. embryo expression (dissected): '46.0336' Avg. embryo expression (LCM): '43.4401' |
||||
| AT3G10210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.08855 x 10-1 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.49 x 10-4 | 87 | 21 | 80.56% | 108 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.5355 x 10-2 | 390 | 205 | 264 | 401 | 65.55% | 60.30% | 595 | 665 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.049488' Avg. expression score for this sample: '246.787' Avg. expression score in LCM sample: '51.2222' Tissue used: 'full endosperm' |
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| AT3G10200 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.112 x 10-3 | 142 | 279 | 58 | 103 | 33.73% | 63.98% | 421 | 161 | TAIR8 |
Avg. embryo expression (dissected): '237.208' Avg. embryo expression (LCM): '119.08' |
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| AT3G10200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6768 x 10-1 | 42 | 16 | 72.41% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.09724 x 10-1 | 126 | 82 | 58 | 135 | 60.58% | 69.95% | 208 | 193 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.049488' Avg. expression score for this sample: '114.755' Avg. expression score in LCM sample: '51.2222' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10200 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.14754 x 10-1 | 32 | 26 | 55.17% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10195 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.18833 x 10-1 | 53 | 62 | 46.09% | 115 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10195 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10195 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G10195 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G10195 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.01077' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT3G10195 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 129 | 33 | 79.63% | 162 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.65 x 10-4 | 49 | 1 | 98.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.31218 x 10-1 | 15 | 5 | 13 | 15 | 75.00% | 53.57% | 20 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.168926' Avg. expression score for this sample: '41.0107' Avg. expression score in LCM sample: '3.48341' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10190 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.6 x 10-6 | 109 | 3 | 97.32% | 112 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.152 x 10-3 | 19 | 1 | 6 | 31 | 95.00% | 83.78% | 20 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.168926' Avg. expression score for this sample: '59.1723' Avg. expression score in LCM sample: '3.48341' Tissue used: 'full endosperm' |
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| AT3G10190 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.83247 x 10-1 | 32 | 20 | 6 | 2 | 61.54% | 25.00% | 52 | 8 | TAIR8 |
Avg. embryo expression (dissected): '86.7051' Avg. embryo expression (LCM): '50.5357' |
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| AT3G10190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 5 | 75.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10185 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.61538 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10185 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 14 | 4 | 4 | 3 | 77.78% | 42.86% | 18 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.481761' Avg. expression score for this sample: '23.705' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G10185 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.68598 x 10-1 | 25 | 14 | 24 | 10 | 64.10% | 29.41% | 39 | 34 | TAIR8 |
Avg. embryo expression (dissected): '173.025' Avg. embryo expression (LCM): '68.3061' |
||||
| AT3G10185 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10185 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10185 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.15239 x 10-1 | 1 | 2 | 7 | 3 | 33.33% | 30.00% | 3 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.481761' Avg. expression score for this sample: '18.4612' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.18539 x 10-1 | 33 | 10 | 11 | 17 | 76.74% | 60.71% | 43 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.077597' Avg. expression score for this sample: '7.15466' Avg. expression score in LCM sample: '9.58304' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10180 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-6 | 118 | 27 | 81.38% | 145 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10180 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.07181 x 10-1 | 72 | 50 | 18 | 15 | 59.02% | 45.45% | 122 | 33 | TAIR8 |
Avg. embryo expression (dissected): '23.31' Avg. embryo expression (LCM): '28.3321' |
||||
| AT3G10180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 5 | 58.33% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0445 x 10-2 | 17 | 6 | 57 | 46 | 73.91% | 44.66% | 23 | 103 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.077597' Avg. expression score for this sample: '7.8765' Avg. expression score in LCM sample: '9.58304' Tissue used: 'full endosperm' |
|||||
| AT3G10180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.85975 x 10-1 | 54 | 29 | 65.06% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10160 | DFC | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10160 | DFC | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10160 | DFC | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '180.66' Avg. expression score in LCM sample: '120.67' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10160 | DFC | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '150.361' Avg. expression score in LCM sample: '120.67' Tissue used: 'full endosperm' |
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| AT3G10160 | DFC | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '502.285' Avg. embryo expression (LCM): '340.262' |
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| AT3G10160 | DFC | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10150 | PAP16 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10150 | PAP16 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.437728' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G10150 | PAP16 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.93652' Avg. embryo expression (LCM): '3.03918' |
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| AT3G10150 | PAP16 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10150 | PAP16 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 2 | 2 | 0 | 0 | 50.00% | 4 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.827143' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10150 | PAP16 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.44444 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10140 | RECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5959 x 10-2 | 18 | 2 | 90.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10140 | RECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.88877 x 10-1 | 8 | 9 | 6 | 6 | 47.06% | 50.00% | 17 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.715251' Avg. expression score for this sample: '27.427' Avg. expression score in LCM sample: '3.63039' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10140 | RECA3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 13 | 15 | 1 | 1 | 46.43% | 50.00% | 28 | 2 | TAIR8 |
Avg. embryo expression (dissected): '43.1498' Avg. embryo expression (LCM): '54.2279' |
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| AT3G10140 | RECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.57683 x 10-1 | 7 | 6 | 53.85% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10140 | RECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.98482 x 10-1 | 5 | 2 | 8 | 21 | 71.43% | 72.41% | 7 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.715251' Avg. expression score for this sample: '24.7559' Avg. expression score in LCM sample: '3.63039' Tissue used: 'full endosperm' |
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| AT3G10140 | RECA3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.4826 x 10-2 | 31 | 6 | 83.78% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G10130 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.51175 x 10-1 | 34 | 8 | 80.95% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10130 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.85082 x 10-1 | 3 | 3 | 0 | 10 | 50.00% | 100.00% | 6 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230602' Avg. expression score for this sample: '19.4091' Avg. expression score in LCM sample: '23.1345' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10130 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 17 | 5 | 77.27% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10130 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.50396 x 10-1 | 10 | 13 | 4 | 40 | 43.48% | 90.91% | 23 | 44 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230602' Avg. expression score for this sample: '31.096' Avg. expression score in LCM sample: '23.1345' Tissue used: 'full endosperm' |
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| AT3G10130 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 0 | 1 | 1 | 100.00% | 50.00% | 2 | 2 | TAIR8 |
Avg. embryo expression (dissected): '17.5629' Avg. embryo expression (LCM): '26.7498' |
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| AT3G10130 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.1126 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.68582 x 10-1 | 2 | 0 | 1 | 12 | 100.00% | 92.31% | 2 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.168582' Avg. expression score for this sample: '5.2027' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G10120 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.908957' Avg. embryo expression (LCM): '1.53215' |
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| AT3G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2059 x 10-2 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G10120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.168582' Avg. expression score for this sample: '.313082' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10116 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.52496' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G10116 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G10116 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT3G10116 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |