| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G16080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '300.907' Avg. expression score in LCM sample: '145.039' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G16070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G16070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G16070 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G16070 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.642304' Avg. embryo expression (LCM): '0' |
||||||
| AT3G16070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16060 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.86152 x 10-1 | 18 | 22 | 5 | 4 | 45.00% | 44.44% | 40 | 9 | TAIR8 |
Avg. embryo expression (dissected): '176.819' Avg. embryo expression (LCM): '170.483' |
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| AT3G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 8 | 6 | 13 | 57.89% | 68.42% | 19 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.083305' Avg. expression score for this sample: '120.835' Avg. expression score in LCM sample: '134.559' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.35518 x 10-1 | 37 | 12 | 75.51% | 49 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.26694 x 10-1 | 32 | 3 | 91.43% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0311 x 10-2 | 12 | 6 | 2 | 43 | 66.67% | 95.56% | 18 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.083305' Avg. expression score for this sample: '101.778' Avg. expression score in LCM sample: '134.559' Tissue used: 'full endosperm' |
|||||
| AT3G16050 | PDX1.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.9 x 10-25 | 594 | 164 | 227 | 1061 | 78.36% | 82.38% | 758 | 1288 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-32' Avg. expression score for this sample: '2465' Avg. expression score in LCM sample: '172.671' Tissue used: 'full endosperm' |
||||
| AT3G16050 | PDX1.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 537 | 10 | 98.17% | 547 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16050 | PDX1.2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.7952 x 10-2 | 787 | 1048 | 226 | 333 | 42.89% | 59.57% | 1835 | 559 | TAIR8 |
Avg. embryo expression (dissected): '3265.6' Avg. embryo expression (LCM): '476.297' |
|||
| AT3G16050 | PDX1.2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-8 | 468 | 69 | 87.15% | 537 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16050 | PDX1.2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.9 x 10-9 | 153 | 9 | 94.44% | 162 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16050 | PDX1.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.4 x 10-12 | 825 | 403 | 324 | 1339 | 67.18% | 80.52% | 1228 | 1663 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-32' Avg. expression score for this sample: '2524.13' Avg. expression score in LCM sample: '172.671' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 2 | 4 | 7 | 60.00% | 63.64% | 5 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.894158' Avg. expression score for this sample: '13.4301' Avg. expression score in LCM sample: '9.93579' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.052 x 10-3 | 16 | 0 | 100.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.81317 x 10-1 | 34 | 9 | 79.07% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.86306 x 10-1 | 38 | 21 | 14 | 39 | 64.41% | 73.58% | 59 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.894158' Avg. expression score for this sample: '56.1895' Avg. expression score in LCM sample: '9.93579' Tissue used: 'full endosperm' |
|||||
| AT3G16040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.54568 x 10-1 | 10 | 3 | 76.92% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16040 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 11 | 14 | 1 | 2 | 44.00% | 66.67% | 25 | 3 | TAIR8 |
Avg. embryo expression (dissected): '25.954' Avg. embryo expression (LCM): '0' |
||||
| AT3G16030 | CES101 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.9681 x 10-2 | 7 | 32 | 1 | 7 | 17.95% | 87.50% | 39 | 8 | TAIR8 |
Avg. embryo expression (dissected): '4.82044' Avg. embryo expression (LCM): '2.46148' |
|||
| AT3G16030 | CES101 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16030 | CES101 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.123 x 10-3 | 7 | 17 | 29.17% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16030 | CES101 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 12 | 9 | 8 | 19 | 57.14% | 70.37% | 21 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.6807' Avg. expression score in LCM sample: '5.20306' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16030 | CES101 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 48 | 19 | 13 | 18 | 71.64% | 58.06% | 67 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.3142' Avg. expression score in LCM sample: '5.20306' Tissue used: 'full endosperm' |
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| AT3G16030 | CES101 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.40077 x 10-1 | 14 | 9 | 60.87% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.87179 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 0 | 1 | 0 | 100.00% | 0.00% | 6 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.24643' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G16020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.96828' Avg. embryo expression (LCM): '0' |
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| AT3G16020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.42857 x 10-1 | 0 | 0 | 4 | 0 | 0.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.53227' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.87179 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.17 x 10-4 | 124 | 24 | 83.78% | 148 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.92894 x 10-1 | 41 | 24 | 16 | 44 | 63.08% | 73.33% | 65 | 60 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.576486' Avg. expression score for this sample: '49.8998' Avg. expression score in LCM sample: '35.422' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.20493 x 10-1 | 74 | 50 | 22 | 88 | 59.68% | 80.00% | 124 | 110 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.576486' Avg. expression score for this sample: '76.575' Avg. expression score in LCM sample: '35.422' Tissue used: 'full endosperm' |
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| AT3G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.1 x 10-5 | 112 | 17 | 86.82% | 129 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.98464 x 10-1 | 50 | 47 | 9 | 13 | 51.55% | 59.09% | 97 | 22 | TAIR8 |
Avg. embryo expression (dissected): '94.0486' Avg. embryo expression (LCM): '96.2364' |
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| AT3G16010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.37 x 10-4 | 29 | 1 | 96.67% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G16000 | MFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.95565 x 10-1 | 69 | 32 | 68.32% | 101 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16000 | MFP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.423 x 10-3 | 1275 | 995 | 319 | 239 | 56.17% | 42.83% | 2270 | 558 | TAIR8 |
Avg. embryo expression (dissected): '487.957' Avg. embryo expression (LCM): '410.527' |
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| AT3G16000 | MFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.9775 x 10-2 | 610 | 331 | 195 | 290 | 64.82% | 59.79% | 941 | 485 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001737' Avg. expression score for this sample: '162.834' Avg. expression score in LCM sample: '29.0137' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G16000 | MFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.06149 x 10-1 | 213 | 128 | 62.46% | 341 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16000 | MFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.1 x 10-16 | 414 | 100 | 80.54% | 514 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G16000 | MFP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4331 x 10-2 | 546 | 229 | 420 | 543 | 70.45% | 56.39% | 775 | 963 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001737' Avg. expression score for this sample: '140.575' Avg. expression score in LCM sample: '29.0137' Tissue used: 'full endosperm' |
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| AT3G15990 | SULTR3;4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 385 | 211 | 246 | 531 | 64.60% | 68.34% | 596 | 777 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.916418' Avg. expression score for this sample: '170.2' Avg. expression score in LCM sample: '64.1858' Tissue used: 'full endosperm' |
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| AT3G15990 | SULTR3;4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.57 x 10-4 | 301 | 92 | 76.59% | 393 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G15990 | SULTR3;4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.43979 x 10-1 | 51 | 51 | 23 | 11 | 50.00% | 32.35% | 102 | 34 | TAIR8 |
Avg. embryo expression (dissected): '49.6085' Avg. embryo expression (LCM): '26.8628' |
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| AT3G15990 | SULTR3;4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.53765 x 10-1 | 70 | 42 | 62.50% | 112 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G15990 | SULTR3;4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.31 x 10-4 | 295 | 217 | 57.62% | 512 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G15990 | SULTR3;4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.89455 x 10-1 | 195 | 49 | 104 | 120 | 79.92% | 53.57% | 244 | 224 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.916418' Avg. expression score for this sample: '94.2807' Avg. expression score in LCM sample: '64.1858' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 2 | 0 | 1 | 33.33% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '251.313' Avg. expression score in LCM sample: '204.213' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '271.784' Avg. expression score in LCM sample: '204.213' Tissue used: 'full endosperm' |
||||||
| AT3G15980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G15980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '209.594' Avg. embryo expression (LCM): '156.291' |
|||||
| AT3G15970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.808 x 10-3 | 456 | 236 | 160 | 75 | 65.90% | 31.91% | 692 | 235 | TAIR8 |
Avg. embryo expression (dissected): '1116.87' Avg. embryo expression (LCM): '797.206' |
||||
| AT3G15970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.476 x 10-3 | 74 | 50 | 59.68% | 124 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.60062 x 10-1 | 422 | 164 | 72.01% | 586 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.76243 x 10-1 | 623 | 182 | 309 | 374 | 77.39% | 54.76% | 805 | 683 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000015' Avg. expression score for this sample: '1098.02' Avg. expression score in LCM sample: '229.449' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G15970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.1 x 10-9 | 727 | 134 | 247 | 495 | 84.44% | 66.71% | 861 | 742 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000015' Avg. expression score for this sample: '915.803' Avg. expression score in LCM sample: '229.449' Tissue used: 'full endosperm' |
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| AT3G15970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1220 | 104 | 92.15% | 1324 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15960 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G15960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.20952' Avg. expression score in LCM sample: '3.11596' Tissue used: 'full endosperm' |
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| AT3G15960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G15960 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.410059' Avg. embryo expression (LCM): '0' |
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| AT3G15960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.83683' Avg. expression score in LCM sample: '3.11596' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G15960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G15950 | NAI2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15950 | NAI2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.100673' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G15950 | NAI2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.628487' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G15950 | NAI2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.4 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G15950 | NAI2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.00323 x 10-1 | 3 | 8 | 0 | 0 | 27.27% | 11 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.84047' Avg. embryo expression (LCM): '2.46148' |
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| AT3G15950 | NAI2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.5 x 10-5 | 150 | 26 | 85.23% | 176 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.91926 x 10-1 | 199 | 238 | 80 | 93 | 45.54% | 53.76% | 437 | 173 | TAIR8 |
Avg. embryo expression (dissected): '178.784' Avg. embryo expression (LCM): '104.487' |
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| AT3G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.8228 | 194 | 151 | 92 | 277 | 56.23% | 75.07% | 345 | 369 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000927' Avg. expression score for this sample: '134.567' Avg. expression score in LCM sample: '82.1026' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 862 | 14 | 98.40% | 876 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1295 | 56 | 95.85% | 1351 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.8 x 10-5 | 514 | 238 | 182 | 653 | 68.35% | 78.20% | 752 | 835 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000927' Avg. expression score for this sample: '192.436' Avg. expression score in LCM sample: '82.1026' Tissue used: 'full endosperm' |
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| AT3G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 9 | 2 | 5 | 4 | 81.82% | 44.44% | 11 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.778716' Avg. expression score for this sample: '7.95347' Avg. expression score in LCM sample: '2.1312' Tissue used: 'full endosperm' |
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| AT3G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.65479 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 6 | 0 | 2 | 45.45% | 100.00% | 11 | 2 | TAIR8 |
Avg. embryo expression (dissected): '8.37925' Avg. embryo expression (LCM): '12.1818' |
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| AT3G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.178 x 10-3 | 4 | 10 | 28.57% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.82043 x 10-1 | 8 | 0 | 1 | 1 | 100.00% | 50.00% | 8 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.778716' Avg. expression score for this sample: '6.00462' Avg. expression score in LCM sample: '2.1312' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.79184 x 10-1 | 24 | 10 | 9 | 26 | 70.59% | 74.29% | 34 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.066251' Avg. expression score for this sample: '58.5528' Avg. expression score in LCM sample: '33.7317' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.04916 x 10-1 | 92 | 30 | 75.41% | 122 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.9032 x 10-2 | 127 | 29 | 81.41% | 156 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.0563 x 10-2 | 62 | 24 | 31 | 98 | 72.09% | 75.97% | 86 | 129 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.066251' Avg. expression score for this sample: '94.5102' Avg. expression score in LCM sample: '33.7317' Tissue used: 'full endosperm' |
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| AT3G15920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.3858 x 10-2 | 8 | 9 | 47.06% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G15920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.39132 x 10-1 | 15 | 22 | 5 | 5 | 40.54% | 50.00% | 37 | 10 | TAIR8 |
Avg. embryo expression (dissected): '51.6542' Avg. embryo expression (LCM): '34.8877' |
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| AT3G15910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.629765' Avg. embryo expression (LCM): '2.72521' |
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| AT3G15910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |