| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G18060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.9 x 10-6 | 147 | 47 | 68 | 293 | 75.77% | 81.16% | 194 | 361 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000011' Avg. expression score for this sample: '166.71' Avg. expression score in LCM sample: '130.606' Tissue used: 'full endosperm' |
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| AT3G18060 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.11 x 10-4 | 594 | 116 | 83.66% | 710 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.05302 x 10-1 | 51 | 8 | 86.44% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18060 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.56166 x 10-1 | 62 | 44 | 14 | 10 | 58.49% | 41.67% | 106 | 24 | TAIR8 |
Avg. embryo expression (dissected): '127.378' Avg. embryo expression (LCM): '71.9355' |
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| AT3G18060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.0371 x 10-2 | 811 | 200 | 80.22% | 1011 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.72055 x 10-1 | 72 | 33 | 32 | 83 | 68.57% | 72.17% | 105 | 115 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000011' Avg. expression score for this sample: '150.772' Avg. expression score in LCM sample: '130.606' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 2 | 0 | 100.00% | 0.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '14.2502' Avg. expression score in LCM sample: '6.58467' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G18050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G18050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 1 | 0 | 100.00% | 0.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.3551' Avg. expression score in LCM sample: '6.58467' Tissue used: 'full endosperm' |
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| AT3G18050 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 0 | 0 | 66.67% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '84.5163' Avg. embryo expression (LCM): '42.2094' |
|||||
| AT3G18050 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G18050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G18040 | MPK9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.2328 x 10-2 | 4 | 8 | 33.33% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18040 | MPK9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.7469 x 10-2 | 59 | 18 | 18 | 5 | 76.62% | 21.74% | 77 | 23 | TAIR8 |
Avg. embryo expression (dissected): '60.4776' Avg. embryo expression (LCM): '67.4396' |
|||
| AT3G18040 | MPK9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-5 | 86 | 8 | 91.49% | 94 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18040 | MPK9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.54646 x 10-1 | 29 | 14 | 67.44% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18040 | MPK9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.23798 x 10-1 | 14 | 4 | 11 | 6 | 77.78% | 35.29% | 18 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.807298' Avg. expression score for this sample: '22.7533' Avg. expression score in LCM sample: '16.0942' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18040 | MPK9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.29905 x 10-1 | 46 | 11 | 22 | 40 | 80.70% | 64.52% | 57 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.807298' Avg. expression score for this sample: '47.5408' Avg. expression score in LCM sample: '16.0942' Tissue used: 'full endosperm' |
||||
| AT3G18035 | HON4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.22268 x 10-1 | 1369 | 871 | 837 | 2223 | 61.12% | 72.65% | 2240 | 3060 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.255022' Avg. expression score for this sample: '1540.65' Avg. expression score in LCM sample: '1064.23' Tissue used: 'full endosperm' |
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| AT3G18035 | HON4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1751 | 313 | 84.84% | 2064 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18035 | HON4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-8 | 492 | 141 | 77.73% | 633 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18035 | HON4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.08713 x 10-1 | 1359 | 1777 | 640 | 934 | 43.34% | 59.34% | 3136 | 1574 | TAIR8 |
Avg. embryo expression (dissected): '3401.67' Avg. embryo expression (LCM): '1960.83' |
|||
| AT3G18035 | HON4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.09152 x 10-1 | 2654 | 1961 | 952 | 3269 | 57.51% | 77.45% | 4615 | 4221 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.255022' Avg. expression score for this sample: '3193.63' Avg. expression score in LCM sample: '1064.23' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G18035 | HON4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 847 | 129 | 86.78% | 976 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18030 | HAL3A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 11 | 3 | 78.57% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18030 | HAL3A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.23097 x 10-1 | 6 | 2 | 3 | 11 | 75.00% | 78.57% | 8 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.26889' Avg. expression score for this sample: '35.7801' Avg. expression score in LCM sample: '32.1149' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G18030 | HAL3A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.81654 x 10-1 | 19 | 3 | 3 | 5 | 86.36% | 62.50% | 22 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.26889' Avg. expression score for this sample: '33.6138' Avg. expression score in LCM sample: '32.1149' Tissue used: 'full endosperm' |
||||
| AT3G18030 | HAL3A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.80172 x 10-1 | 6 | 1 | 3 | 1 | 85.71% | 25.00% | 7 | 4 | TAIR8 |
Avg. embryo expression (dissected): '31.8913' Avg. embryo expression (LCM): '27.4405' |
|||
| AT3G18030 | HAL3A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.73076 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18030 | HAL3A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.29598 x 10-1 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.7241 x 10-2 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.6382 x 10-1 | 28 | 18 | 7 | 7 | 60.87% | 50.00% | 46 | 14 | TAIR8 |
Avg. embryo expression (dissected): '53.2194' Avg. embryo expression (LCM): '60.1807' |
||||
| AT3G18020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.14425 x 10-1 | 52 | 23 | 69.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 14 | 1 | 7 | 4 | 93.33% | 36.36% | 15 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.513876' Avg. expression score for this sample: '21.6138' Avg. expression score in LCM sample: '15.6533' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G18020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.38061 x 10-1 | 17 | 8 | 68.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.26508 x 10-1 | 21 | 11 | 13 | 10 | 65.62% | 43.48% | 32 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.513876' Avg. expression score for this sample: '30.5745' Avg. expression score in LCM sample: '15.6533' Tissue used: 'full endosperm' |
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| AT3G18010 | WOX1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.63807' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G18010 | WOX1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18010 | WOX1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18010 | WOX1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '31.638' Avg. embryo expression (LCM): '20.6463' |
|||
| AT3G18010 | WOX1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18010 | WOX1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.33795' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18000 | XPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18000 | XPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 3 | 1 | 5 | 40.00% | 83.33% | 5 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '265.927' Avg. expression score in LCM sample: '156.65' Tissue used: 'full endosperm' |
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| AT3G18000 | XPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '283.029' Avg. expression score in LCM sample: '156.65' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18000 | XPL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 2 | 0 | 1 | 60.00% | 100.00% | 5 | 1 | TAIR8 |
Avg. embryo expression (dissected): '558.763' Avg. embryo expression (LCM): '385.812' |
|||
| AT3G18000 | XPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18000 | XPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17998 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.66667 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17998 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '557.173' Avg. embryo expression (LCM): '284.351' |
|||||
| AT3G17998 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17998 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.66667 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17998 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '256.08' Avg. expression score in LCM sample: '92.4352' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G17998 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 3 | 0 | 1 | 50.00% | 100.00% | 6 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '219.699' Avg. expression score in LCM sample: '92.4352' Tissue used: 'full endosperm' |
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| AT3G17980 | C2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 0 | 1 | 50.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.16474' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G17980 | C2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.77475' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G17980 | C2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.44444 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17980 | C2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17980 | C2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 2 | 0 | 0 | 50.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '20.9736' Avg. embryo expression (LCM): '0' |
||||
| AT3G17980 | C2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17970 | TOC64-III | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.31513 x 10-1 | 55 | 13 | 80.88% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17970 | TOC64-III | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.81761 x 10-1 | 11 | 9 | 8 | 10 | 55.00% | 55.56% | 20 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.609001' Avg. expression score for this sample: '7.43524' Avg. expression score in LCM sample: '5.02669' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G17970 | TOC64-III | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.68105 x 10-1 | 24 | 12 | 13 | 55 | 66.67% | 80.88% | 36 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.609001' Avg. expression score for this sample: '16.8714' Avg. expression score in LCM sample: '5.02669' Tissue used: 'full endosperm' |
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| AT3G17970 | TOC64-III | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.57582 x 10-1 | 34 | 36 | 3 | 10 | 48.57% | 76.92% | 70 | 13 | TAIR8 |
Avg. embryo expression (dissected): '27.8405' Avg. embryo expression (LCM): '57.0034' |
|||
| AT3G17970 | TOC64-III | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.6258 x 10-2 | 109 | 25 | 81.34% | 134 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17970 | TOC64-III | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.1484 x 10-2 | 15 | 1 | 93.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G17950 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.49887 x 10-1 | 12 | 6 | 1 | 2 | 66.67% | 66.67% | 18 | 3 | TAIR8 |
Avg. embryo expression (dissected): '22.6109' Avg. embryo expression (LCM): '9.95895' |
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| AT3G17950 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G17950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.40071 x 10-1 | 6 | 4 | 60.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 3 | 1 | 1 | 50.00% | 50.00% | 6 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.302829' Avg. expression score for this sample: '9.01739' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G17950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.46935 x 10-1 | 1 | 2 | 4 | 2 | 33.33% | 33.33% | 3 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.302829' Avg. expression score for this sample: '3.51711' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G17940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.68904 x 10-1 | 202 | 95 | 97 | 254 | 68.01% | 72.36% | 297 | 351 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.020824' Avg. expression score for this sample: '2245.74' Avg. expression score in LCM sample: '796.98' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G17940 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.9671 x 10-2 | 292 | 123 | 130 | 321 | 70.36% | 71.18% | 415 | 451 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.020824' Avg. expression score for this sample: '1793.26' Avg. expression score in LCM sample: '796.98' Tissue used: 'full endosperm' |
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| AT3G17940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-28 | 420 | 28 | 93.75% | 448 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.43003 x 10-1 | 159 | 51 | 75.71% | 210 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.98309 x 10-1 | 72 | 72 | 39 | 30 | 50.00% | 43.48% | 144 | 69 | TAIR8 |
Avg. embryo expression (dissected): '1703.28' Avg. embryo expression (LCM): '859.421' |
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| AT3G17940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.0 x 10-5 | 254 | 57 | 81.67% | 311 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17930 | DAC | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.672 x 10-2 | 95 | 26 | 78.51% | 121 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17930 | DAC | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.57086 x 10-1 | 35 | 24 | 33 | 95 | 59.32% | 74.22% | 59 | 128 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.532182' Avg. expression score for this sample: '654.281' Avg. expression score in LCM sample: '263.107' Tissue used: 'full endosperm' |
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| AT3G17930 | DAC | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.64484 x 10-1 | 10 | 2 | 5 | 9 | 83.33% | 64.29% | 12 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.532182' Avg. expression score for this sample: '1046.11' Avg. expression score in LCM sample: '263.107' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G17930 | DAC | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.89073 x 10-1 | 10 | 9 | 3 | 5 | 52.63% | 62.50% | 19 | 8 | TAIR8 |
Avg. embryo expression (dissected): '1528.29' Avg. embryo expression (LCM): '1130.27' |
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| AT3G17930 | DAC | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.844 x 10-3 | 79 | 13 | 85.87% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17930 | DAC | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G17920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G17920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '11.7477' Avg. embryo expression (LCM): '4.57132' |
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| AT3G17920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G17920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '12.4128' Avg. expression score in LCM sample: '17.5052' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G17920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '21.0358' Avg. expression score in LCM sample: '17.5052' Tissue used: 'full endosperm' |
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| AT3G17910 | SURF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '18.3919' Avg. expression score in LCM sample: '6.17312' Tissue used: 'full endosperm' |
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| AT3G17910 | SURF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '18.942' Avg. expression score in LCM sample: '6.17312' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G17910 | SURF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17910 | SURF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17910 | SURF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17910 | SURF1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '36.2997' Avg. embryo expression (LCM): '30.7434' |
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| AT3G17900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.15808 x 10-1 | 366 | 344 | 158 | 184 | 51.55% | 53.80% | 710 | 342 | TAIR8 |
Avg. embryo expression (dissected): '265.084' Avg. embryo expression (LCM): '142.05' |
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| AT3G17900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1918 | 202 | 90.47% | 2120 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.01223 x 10-1 | 97 | 47 | 67.36% | 144 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G17900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.9 x 10-23 | 852 | 137 | 86.15% | 989 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |