| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G18217 | MIR157C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT3G18217 | MIR157C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18217 | MIR157C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G18217 | MIR157C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18215 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.9 x 10-11 | 161 | 4 | 97.58% | 165 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18215 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.65363 x 10-1 | 49 | 7 | 24 | 47 | 87.50% | 66.20% | 56 | 71 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.234044' Avg. expression score for this sample: '91.878' Avg. expression score in LCM sample: '67.5663' Tissue used: 'full endosperm' |
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| AT3G18215 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.908 x 10-3 | 68 | 9 | 88.31% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18215 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 5 | 9 | 16 | 68.75% | 64.00% | 16 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.234044' Avg. expression score for this sample: '144.451' Avg. expression score in LCM sample: '67.5663' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18215 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.44533 x 10-1 | 16 | 16 | 11 | 8 | 50.00% | 42.11% | 32 | 19 | TAIR8 |
Avg. embryo expression (dissected): '208.327' Avg. embryo expression (LCM): '129.592' |
||||
| AT3G18215 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.66678 x 10-1 | 14 | 2 | 87.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.3593 x 10-2 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18210 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.62554 x 10-1 | 9 | 7 | 2 | 4 | 56.25% | 66.67% | 16 | 6 | TAIR8 |
Avg. embryo expression (dissected): '138.856' Avg. embryo expression (LCM): '100.092' |
||||
| AT3G18210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 41 | 13 | 75.93% | 54 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.31038 x 10-1 | 13 | 8 | 6 | 35 | 61.90% | 85.37% | 21 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.256526' Avg. expression score for this sample: '111.095' Avg. expression score in LCM sample: '35.907' Tissue used: 'full endosperm' |
|||||
| AT3G18210 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.14644 x 10-1 | 28 | 6 | 82.35% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 1 | 4 | 50.00% | 80.00% | 2 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.256526' Avg. expression score for this sample: '76.3706' Avg. expression score in LCM sample: '35.907' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18200 | UMAMIT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.57909' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G18200 | UMAMIT4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.68378' Avg. embryo expression (LCM): '0' |
|||||
| AT3G18200 | UMAMIT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18200 | UMAMIT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18200 | UMAMIT4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.40862' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT3G18200 | UMAMIT4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.8 x 10-9 | 742 | 172 | 81.18% | 914 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.073 x 10-3 | 259 | 128 | 136 | 453 | 66.93% | 76.91% | 387 | 589 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.014175' Avg. expression score for this sample: '760.098' Avg. expression score in LCM sample: '592.782' Tissue used: 'full endosperm' |
|||||
| AT3G18190 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.2 x 10-6 | 700 | 187 | 78.92% | 887 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.77289 x 10-1 | 219 | 139 | 91 | 258 | 61.17% | 73.93% | 358 | 349 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.014175' Avg. expression score for this sample: '779.155' Avg. expression score in LCM sample: '592.782' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G18190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.9834 x 10-2 | 102 | 28 | 78.46% | 130 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18190 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.28828 x 10-1 | 275 | 373 | 85 | 131 | 42.44% | 60.65% | 648 | 216 | TAIR8 |
Avg. embryo expression (dissected): '1335.23' Avg. embryo expression (LCM): '1418.2' |
||||
| AT3G18180 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.96004 x 10-1 | 4 | 5 | 0 | 8 | 44.44% | 100.00% | 9 | 8 | TAIR8 |
Avg. embryo expression (dissected): '12.064' Avg. embryo expression (LCM): '0' |
||||
| AT3G18180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.34386 x 10-1 | 6 | 4 | 60.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18180 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.12761 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.7023 x 10-2 | 51 | 14 | 40 | 121 | 78.46% | 75.16% | 65 | 161 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.596157' Avg. expression score for this sample: '42.2361' Avg. expression score in LCM sample: '154.269' Tissue used: 'full endosperm' |
|||||
| AT3G18180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.38673 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.37092 x 10-1 | 184 | 100 | 105 | 194 | 64.79% | 64.88% | 284 | 299 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.596157' Avg. expression score for this sample: '212.994' Avg. expression score in LCM sample: '154.269' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18170 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.66128 x 10-1 | 8 | 6 | 4 | 6 | 57.14% | 60.00% | 14 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.851259' Avg. expression score for this sample: '25.9999' Avg. expression score in LCM sample: '5.57051' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G18170 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.32242 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18170 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.31222 x 10-1 | 1 | 7 | 1 | 0 | 12.50% | 0.00% | 8 | 1 | TAIR8 |
Avg. embryo expression (dissected): '5.99485' Avg. embryo expression (LCM): '0' |
||||
| AT3G18170 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.48582 x 10-1 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18170 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 14 | 7 | 6 | 11 | 66.67% | 64.71% | 21 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.851259' Avg. expression score for this sample: '14.5128' Avg. expression score in LCM sample: '5.57051' Tissue used: 'full endosperm' |
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| AT3G18170 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.25 x 10-4 | 23 | 0 | 100.00% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18165 | MOS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3 x 10-5 | 561 | 145 | 79.46% | 706 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18165 | MOS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.6055 x 10-2 | 189 | 92 | 129 | 346 | 67.26% | 72.84% | 281 | 475 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.037684' Avg. expression score for this sample: '506.697' Avg. expression score in LCM sample: '196.937' Tissue used: 'full endosperm' |
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| AT3G18165 | MOS4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-5 | 761 | 201 | 79.11% | 962 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18165 | MOS4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.43308 x 10-1 | 105 | 58 | 39 | 134 | 64.42% | 77.46% | 163 | 173 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.037684' Avg. expression score for this sample: '392.615' Avg. expression score in LCM sample: '196.937' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18165 | MOS4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.87126 x 10-1 | 153 | 163 | 38 | 43 | 48.42% | 53.09% | 316 | 81 | TAIR8 |
Avg. embryo expression (dissected): '551.381' Avg. embryo expression (LCM): '665.203' |
|||
| AT3G18165 | MOS4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.64139 x 10-1 | 94 | 41 | 69.63% | 135 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18160 | PEX3-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18160 | PEX3-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '43.5775' Avg. embryo expression (LCM): '46.517' |
|||
| AT3G18160 | PEX3-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.26482 x 10-1 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18160 | PEX3-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.35117 x 10-1 | 5 | 2 | 0 | 4 | 71.43% | 100.00% | 7 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.681659' Avg. expression score for this sample: '38.7652' Avg. expression score in LCM sample: '17.4905' Tissue used: 'full endosperm' |
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| AT3G18160 | PEX3-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.6 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18160 | PEX3-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 0 | 1 | 66.67% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.681659' Avg. expression score for this sample: '30.4352' Avg. expression score in LCM sample: '17.4905' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18140 | LST8-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.6257 x 10-1 | 77 | 79 | 19 | 127 | 49.36% | 86.99% | 156 | 146 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042856' Avg. expression score for this sample: '130.56' Avg. expression score in LCM sample: '21.944' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18140 | LST8-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.212 x 10-3 | 69 | 165 | 11 | 42 | 29.49% | 79.25% | 234 | 53 | TAIR8 |
Avg. embryo expression (dissected): '146.253' Avg. embryo expression (LCM): '93.7247' |
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| AT3G18140 | LST8-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.6288 x 10-2 | 52 | 11 | 82.54% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18140 | LST8-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.3 x 10-7 | 187 | 26 | 87.79% | 213 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18140 | LST8-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2634 x 10-2 | 91 | 65 | 35 | 208 | 58.33% | 85.60% | 156 | 243 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042856' Avg. expression score for this sample: '99.2771' Avg. expression score in LCM sample: '21.944' Tissue used: 'full endosperm' |
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| AT3G18140 | LST8-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.73 x 10-4 | 219 | 46 | 82.64% | 265 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18130 | RACK1C_AT | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.1197 x 10-2 | 117 | 40 | 74.52% | 157 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18130 | RACK1C_AT | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.16251 x 10-1 | 84 | 34 | 32 | 75 | 71.19% | 70.09% | 118 | 107 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.756767' Avg. expression score for this sample: '242.942' Avg. expression score in LCM sample: '86.1151' Tissue used: 'full endosperm' |
||||
| AT3G18130 | RACK1C_AT | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-8 | 224 | 40 | 84.85% | 264 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18130 | RACK1C_AT | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.17504 x 10-1 | 40 | 46 | 17 | 43 | 46.51% | 71.67% | 86 | 60 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.756767' Avg. expression score for this sample: '394.74' Avg. expression score in LCM sample: '86.1151' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18130 | RACK1C_AT | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.4179 x 10-1 | 31 | 21 | 59.62% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18130 | RACK1C_AT | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.85047 x 10-1 | 127 | 126 | 20 | 31 | 50.20% | 60.78% | 253 | 51 | TAIR8 |
Avg. embryo expression (dissected): '1201.32' Avg. embryo expression (LCM): '908.123' |
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| AT3G18120 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G18120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G18120 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G18120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.375369' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G18120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G18120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.540466' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18110 | EMB1270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 14 | 10 | 11 | 30 | 58.33% | 73.17% | 24 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.904135' Avg. expression score for this sample: '91.5993' Avg. expression score in LCM sample: '53.5151' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18110 | EMB1270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.46709 x 10-1 | 10 | 3 | 76.92% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18110 | EMB1270 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.0488 x 10-1 | 54 | 44 | 27 | 14 | 55.10% | 34.15% | 98 | 41 | TAIR8 |
Avg. embryo expression (dissected): '197.799' Avg. embryo expression (LCM): '180.341' |
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| AT3G18110 | EMB1270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.48991 x 10-1 | 26 | 12 | 68.42% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18110 | EMB1270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.75075 x 10-1 | 21 | 19 | 13 | 36 | 52.50% | 73.47% | 40 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.904135' Avg. expression score for this sample: '96.6177' Avg. expression score in LCM sample: '53.5151' Tissue used: 'full endosperm' |
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| AT3G18110 | EMB1270 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.97398 x 10-1 | 27 | 17 | 61.36% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18100 | MYB4R1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.51 x 10-4 | 314 | 94 | 76.96% | 408 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18100 | MYB4R1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.77817 x 10-1 | 140 | 60 | 53 | 117 | 70.00% | 68.82% | 200 | 170 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.814828' Avg. expression score for this sample: '112.199' Avg. expression score in LCM sample: '15.5357' Tissue used: 'full endosperm' |
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| AT3G18100 | MYB4R1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3593 x 10-1 | 221 | 85 | 72.22% | 306 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18100 | MYB4R1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.26498 x 10-1 | 97 | 61 | 41 | 91 | 61.39% | 68.94% | 158 | 132 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.814828' Avg. expression score for this sample: '96.0022' Avg. expression score in LCM sample: '15.5357' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18100 | MYB4R1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.13419 x 10-1 | 90 | 107 | 47 | 39 | 45.69% | 45.35% | 197 | 86 | TAIR8 |
Avg. embryo expression (dissected): '163.605' Avg. embryo expression (LCM): '86.3151' |
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| AT3G18100 | MYB4R1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.37301 x 10-1 | 18 | 10 | 64.29% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18090 | NRPD2B | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.675 x 10-3 | 26 | 27 | 49.06% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18090 | NRPD2B | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.45403 x 10-1 | 43 | 42 | 13 | 25 | 50.59% | 65.79% | 85 | 38 | TAIR8 |
Avg. embryo expression (dissected): '147.428' Avg. embryo expression (LCM): '95.2568' |
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| AT3G18090 | NRPD2B | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.21072 x 10-1 | 7 | 5 | 58.33% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18090 | NRPD2B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.77278 x 10-1 | 40 | 9 | 9 | 16 | 81.63% | 64.00% | 49 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.637054' Avg. expression score for this sample: '80.6558' Avg. expression score in LCM sample: '40.0812' Tissue used: 'full endosperm' |
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| AT3G18090 | NRPD2B | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.64408 x 10-1 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18090 | NRPD2B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.75075 x 10-1 | 28 | 15 | 17 | 29 | 65.12% | 63.04% | 43 | 46 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.637054' Avg. expression score for this sample: '83.5519' Avg. expression score in LCM sample: '40.0812' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18080 | BGLU44 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.32736 x 10-1 | 478 | 148 | 271 | 368 | 76.36% | 57.59% | 626 | 639 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.240649' Avg. expression score for this sample: '1640.58' Avg. expression score in LCM sample: '1321.56' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18080 | BGLU44 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 90 | 89 | 28 | 28 | 50.28% | 50.00% | 179 | 56 | TAIR8 |
Avg. embryo expression (dissected): '444.166' Avg. embryo expression (LCM): '127.319' |
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| AT3G18080 | BGLU44 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.2919 | 61 | 40 | 60.40% | 101 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18080 | BGLU44 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-13 | 1083 | 346 | 75.79% | 1429 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18080 | BGLU44 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.41911 x 10-1 | 935 | 262 | 832 | 1086 | 78.11% | 56.62% | 1197 | 1918 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.240649' Avg. expression score for this sample: '1240.8' Avg. expression score in LCM sample: '1321.56' Tissue used: 'full endosperm' |
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| AT3G18080 | BGLU44 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.11407 x 10-1 | 582 | 287 | 66.97% | 869 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18070 | BGLU43 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18070 | BGLU43 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 2 | 0 | 1 | 0.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.592075' Avg. expression score for this sample: '1.38858' Avg. expression score in LCM sample: '9.8329' Tissue used: 'full endosperm' |
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| AT3G18070 | BGLU43 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.1927 x 10-1 | 5 | 3 | 62.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G18070 | BGLU43 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 2 | 0 | 100.00% | 0.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.592075' Avg. expression score for this sample: '4.3236' Avg. expression score in LCM sample: '9.8329' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G18070 | BGLU43 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G18070 | BGLU43 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28571 x 10-1 | 0 | 2 | 2 | 0 | 0.00% | 0.00% | 2 | 2 | TAIR8 |
Avg. embryo expression (dissected): '4.68874' Avg. embryo expression (LCM): '10.926' |