| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19510 | HAT3.1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.5366 x 10-2 | 111 | 63 | 63.79% | 174 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19510 | HAT3.1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1296 | 160 | 89.01% | 1456 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19510 | HAT3.1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.2 x 10-11 | 746 | 189 | 352 | 930 | 79.79% | 72.54% | 935 | 1282 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.4e-07' Avg. expression score for this sample: '302.93' Avg. expression score in LCM sample: '108.632' Tissue used: 'full endosperm' |
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| AT3G19510 | HAT3.1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.8055 x 10-1 | 519 | 499 | 205 | 194 | 50.98% | 48.62% | 1018 | 399 | TAIR8 |
Avg. embryo expression (dissected): '332.396' Avg. embryo expression (LCM): '234.795' |
|||
| AT3G19510 | HAT3.1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.21964 x 10-1 | 1009 | 429 | 70.17% | 1438 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19510 | HAT3.1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.03083 x 10-1 | 681 | 245 | 367 | 592 | 73.54% | 61.73% | 926 | 959 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.4e-07' Avg. expression score for this sample: '275.445' Avg. expression score in LCM sample: '108.632' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19508 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.25177 x 10-1 | 16 | 8 | 20 | 12 | 66.67% | 37.50% | 24 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.571735' Avg. expression score for this sample: '61.7278' Avg. expression score in LCM sample: '19.8275' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G19508 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.30597 x 10-1 | 15 | 6 | 71.43% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19508 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.1662 x 10-2 | 31 | 8 | 79.49% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19508 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.12803 x 10-1 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19508 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.187 x 10-2 | 71 | 35 | 11 | 7 | 66.98% | 38.89% | 106 | 18 | TAIR8 |
Avg. embryo expression (dissected): '200.262' Avg. embryo expression (LCM): '196.002' |
||||
| AT3G19508 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.72745 x 10-1 | 44 | 9 | 26 | 37 | 83.02% | 58.73% | 53 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.571735' Avg. expression score for this sample: '69.9611' Avg. expression score in LCM sample: '19.8275' Tissue used: 'full endosperm' |
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| AT3G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.07678 x 10-1 | 8 | 2 | 7 | 2 | 80.00% | 22.22% | 10 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.536507' Avg. expression score for this sample: '28.2278' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT3G19500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.00323 x 10-1 | 3 | 3 | 6 | 0 | 50.00% | 0.00% | 6 | 6 | TAIR8 |
Avg. embryo expression (dissected): '38.6347' Avg. embryo expression (LCM): '13.3749' |
||||
| AT3G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 1 | 0 | 100.00% | 0.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.536507' Avg. expression score for this sample: '17.8881' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19490 | NHD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.2 x 10-8 | 192 | 23 | 89.30% | 215 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19490 | NHD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.23994 x 10-1 | 41 | 12 | 77.36% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19490 | NHD1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.6965 x 10-1 | 102 | 120 | 31 | 44 | 45.95% | 58.67% | 222 | 75 | TAIR8 |
Avg. embryo expression (dissected): '194.367' Avg. embryo expression (LCM): '103.319' |
|||
| AT3G19490 | NHD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.02 x 10-3 | 121 | 45 | 58 | 220 | 72.89% | 79.14% | 166 | 278 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.017233' Avg. expression score for this sample: '134.995' Avg. expression score in LCM sample: '84.0868' Tissue used: 'full endosperm' |
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| AT3G19490 | NHD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.30184 x 10-1 | 83 | 47 | 52 | 110 | 63.85% | 67.90% | 130 | 162 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.017233' Avg. expression score for this sample: '112.98' Avg. expression score in LCM sample: '84.0868' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G19490 | NHD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.081 x 10-2 | 191 | 47 | 80.25% | 238 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.67485 x 10-1 | 55 | 28 | 66.27% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 38 | 9 | 19 | 14 | 80.85% | 42.42% | 47 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.895571' Avg. expression score for this sample: '47.216' Avg. expression score in LCM sample: '38.3028' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.45937 x 10-1 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1922 x 10-2 | 61 | 11 | 84.72% | 72 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.68502 x 10-1 | 22 | 4 | 10 | 16 | 84.62% | 61.54% | 26 | 26 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.895571' Avg. expression score for this sample: '45.1345' Avg. expression score in LCM sample: '38.3028' Tissue used: 'full endosperm' |
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| AT3G19480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.47465 x 10-1 | 21 | 14 | 7 | 8 | 60.00% | 53.33% | 35 | 15 | TAIR8 |
Avg. embryo expression (dissected): '63.0116' Avg. embryo expression (LCM): '21.8142' |
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| AT3G19470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 1 | 2 | 0 | 66.67% | 0.00% | 3 | 2 | TAIR8 |
Avg. embryo expression (dissected): '5.82756' Avg. embryo expression (LCM): '3.62943' |
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| AT3G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.65998 x 10-1 | 32 | 14 | 14 | 17 | 69.57% | 54.84% | 46 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.895379' Avg. expression score for this sample: '29.3393' Avg. expression score in LCM sample: '20.1508' Tissue used: 'full endosperm' |
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| AT3G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.27646 x 10-1 | 28 | 5 | 9 | 12 | 84.85% | 57.14% | 33 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.895379' Avg. expression score for this sample: '23.8398' Avg. expression score in LCM sample: '20.1508' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.73005 x 10-1 | 10 | 1 | 90.91% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.5 x 10-8 | 54 | 0 | 100.00% | 54 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.58429 x 10-1 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.19678 x 10-1 | 9 | 3 | 75.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.29951 x 10-1 | 65 | 11 | 85.53% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.31857 x 10-1 | 3 | 7 | 3 | 4 | 30.00% | 57.14% | 10 | 7 | TAIR8 |
Avg. embryo expression (dissected): '51.6085' Avg. embryo expression (LCM): '36.2315' |
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| AT3G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.8036 x 10-2 | 52 | 6 | 89.66% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 2 | 5 | 4 | 84.62% | 44.44% | 13 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.061592' Avg. expression score for this sample: '56.0333' Avg. expression score in LCM sample: '34.6871' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.8331 x 10-2 | 37 | 2 | 13 | 30 | 94.87% | 69.77% | 39 | 43 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.061592' Avg. expression score for this sample: '106.084' Avg. expression score in LCM sample: '34.6871' Tissue used: 'full endosperm' |
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| AT3G19450 | ATCAD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.5 x 10-7 | 143 | 40 | 61 | 288 | 78.14% | 82.52% | 183 | 349 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.9e-08' Avg. expression score for this sample: '669.246' Avg. expression score in LCM sample: '73.3426' Tissue used: 'full endosperm' |
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| AT3G19450 | ATCAD4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 494 | 5 | 99.00% | 499 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19450 | ATCAD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.8285 x 10-2 | 131 | 43 | 43 | 123 | 75.29% | 74.10% | 174 | 166 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.9e-08' Avg. expression score for this sample: '526.706' Avg. expression score in LCM sample: '73.3426' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19450 | ATCAD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 493 | 7 | 98.60% | 500 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19450 | ATCAD4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.5164 x 10-2 | 84 | 12 | 87.50% | 96 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19450 | ATCAD4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.97614 x 10-1 | 249 | 304 | 99 | 102 | 45.03% | 50.75% | 553 | 201 | TAIR8 |
Avg. embryo expression (dissected): '1705.1' Avg. embryo expression (LCM): '971.418' |
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| AT3G19440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '16.3425' Avg. embryo expression (LCM): '17.7453' |
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| AT3G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.64266' Avg. expression score in LCM sample: '.896573' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.81438' Avg. expression score in LCM sample: '.896573' Tissue used: 'full endosperm' |
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| AT3G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.29484' Avg. embryo expression (LCM): '0' |
||||||
| AT3G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.37191' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.6196' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G19420 | PEN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '282.901' Avg. expression score in LCM sample: '50.5461' Tissue used: 'full endosperm' |
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| AT3G19420 | PEN2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19420 | PEN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '168.846' Avg. expression score in LCM sample: '50.5461' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19420 | PEN2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19420 | PEN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19420 | PEN2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '168.673' Avg. embryo expression (LCM): '125.259' |
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| AT3G19410 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT3G19410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.6194' Avg. expression score in LCM sample: '2.61623' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.81446' Avg. expression score in LCM sample: '2.61623' Tissue used: 'full endosperm' |
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| AT3G19410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19410 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19400 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.18605 x 10-1 | 25 | 0 | 100.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19400 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.464886' Avg. embryo expression (LCM): '0' |
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| AT3G19400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.2107 x 10-2 | 5 | 3 | 62.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.087683' Avg. expression score for this sample: '5.59211' Avg. expression score in LCM sample: '3.5275' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.5449 x 10-2 | 3 | 0 | 1 | 13 | 100.00% | 92.86% | 3 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.087683' Avg. expression score for this sample: '17.8581' Avg. expression score in LCM sample: '3.5275' Tissue used: 'full endosperm' |
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| AT3G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.44444 x 10-1 | 3 | 0 | 0 | 2 | 100.00% | 100.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '4.87433' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '4.24564' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G19390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.09421' Avg. embryo expression (LCM): '0' |
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| AT3G19380 | PUB25 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.5762 x 10-2 | 96 | 56 | 31 | 27 | 63.16% | 46.55% | 152 | 58 | TAIR8 |
Avg. embryo expression (dissected): '73.7753' Avg. embryo expression (LCM): '11.7674' |
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| AT3G19380 | PUB25 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.1308 x 10-2 | 85 | 24 | 25 | 68 | 77.98% | 73.12% | 109 | 93 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000317' Avg. expression score for this sample: '41.7465' Avg. expression score in LCM sample: '16.3588' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19380 | PUB25 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.216 x 10-3 | 79 | 30 | 25 | 126 | 72.48% | 83.44% | 109 | 151 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000317' Avg. expression score for this sample: '31.2541' Avg. expression score in LCM sample: '16.3588' Tissue used: 'full endosperm' |
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| AT3G19380 | PUB25 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.339 x 10-3 | 588 | 257 | 69.59% | 845 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19380 | PUB25 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.9847 x 10-2 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19380 | PUB25 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-7 | 382 | 40 | 90.52% | 422 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-6 | 42 | 3 | 93.33% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.5 x 10-8 | 41 | 78 | 34.45% | 119 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 5 | 1 | 1 | 0 | 83.33% | 0.00% | 6 | 1 | TAIR8 |
Avg. embryo expression (dissected): '11.1618' Avg. embryo expression (LCM): '.514902' |
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| AT3G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.7301 x 10-2 | 5 | 9 | 35.71% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.37426 x 10-1 | 195 | 37 | 90 | 37 | 84.05% | 29.13% | 232 | 127 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000043' Avg. expression score for this sample: '390.804' Avg. expression score in LCM sample: '20.5624' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G19370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.8 x 10-5 | 593 | 111 | 479 | 252 | 84.23% | 34.47% | 704 | 731 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000043' Avg. expression score for this sample: '1151.72' Avg. expression score in LCM sample: '20.5624' Tissue used: 'full endosperm' |