| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G54930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.0631 x 10-2 | 51 | 18 | 73.91% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.63 x 10-4 | 58 | 11 | 84.06% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 16 | 3 | 84.21% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.10777 x 10-1 | 7 | 1 | 0 | 3 | 87.50% | 100.00% | 8 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.154126' Avg. expression score for this sample: '16.7228' Avg. expression score in LCM sample: '16.5058' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.80115 x 10-1 | 9 | 3 | 1 | 7 | 75.00% | 87.50% | 12 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.154126' Avg. expression score for this sample: '21.63' Avg. expression score in LCM sample: '16.5058' Tissue used: 'full endosperm' |
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| AT5G54920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 1 | 1 | 0 | 66.67% | 0.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '14.6577' Avg. embryo expression (LCM): '15.4471' |
||||
| AT5G54920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.6013 x 10-2 | 19 | 12 | 61.29% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.8 x 10-24 | 435 | 47 | 90.25% | 482 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.32449 x 10-1 | 41 | 18 | 31 | 37 | 69.49% | 54.41% | 59 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.449662' Avg. expression score for this sample: '74.6377' Avg. expression score in LCM sample: '44.9168' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G54910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.66001 x 10-1 | 155 | 38 | 112 | 125 | 80.31% | 52.74% | 193 | 237 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.449662' Avg. expression score for this sample: '125.915' Avg. expression score in LCM sample: '44.9168' Tissue used: 'full endosperm' |
|||||
| AT5G54910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 63 | 56 | 24 | 17 | 52.94% | 41.46% | 119 | 41 | TAIR8 |
Avg. embryo expression (dissected): '160.745' Avg. embryo expression (LCM): '247.605' |
||||
| AT5G54910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.65866 x 10-1 | 6 | 6 | 50.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.91346 x 10-1 | 227 | 152 | 59.89% | 379 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54900 | RBP45A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54900 | RBP45A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 0 | 1 | 0.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '348.355' Avg. expression score in LCM sample: '197.569' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54900 | RBP45A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '173.048' Avg. expression score in LCM sample: '197.569' Tissue used: 'full endosperm' |
|||||
| AT5G54900 | RBP45A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '567.455' Avg. embryo expression (LCM): '547.541' |
||||
| AT5G54900 | RBP45A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54900 | RBP45A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.13713 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 1 | 0 | 0.00% | 0.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '35.8414' Avg. expression score in LCM sample: '14.3893' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54890 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 4 | 0 | 3 | 4 | 100.00% | 57.14% | 4 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '47.5678' Avg. expression score in LCM sample: '14.3893' Tissue used: 'full endosperm' |
|||||
| AT5G54890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '30.2029' Avg. embryo expression (LCM): '20.8096' |
||||||
| AT5G54890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.14846 x 10-1 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.6175 x 10-2 | 21 | 0 | 100.00% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 3 | 0 | 1 | 40.00% | 100.00% | 5 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.410132' Avg. expression score for this sample: '18.6326' Avg. expression score in LCM sample: '13.5074' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G54880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.04683 x 10-1 | 11 | 4 | 0 | 13 | 73.33% | 100.00% | 15 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.410132' Avg. expression score for this sample: '38.766' Avg. expression score in LCM sample: '13.5074' Tissue used: 'full endosperm' |
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| AT5G54880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.57057 x 10-1 | 3 | 11 | 2 | 1 | 21.43% | 33.33% | 14 | 3 | TAIR8 |
Avg. embryo expression (dissected): '58.5325' Avg. embryo expression (LCM): '71.0564' |
||||
| AT5G54880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.52752 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.42268 x 10-1 | 16 | 1 | 94.12% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.18 x 10-4 | 48 | 0 | 100.00% | 48 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.83814 x 10-1 | 19 | 4 | 12 | 21 | 82.61% | 63.64% | 23 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001566' Avg. expression score for this sample: '221.756' Avg. expression score in LCM sample: '147.141' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.65 x 10-4 | 58 | 11 | 12 | 64 | 84.06% | 84.21% | 69 | 76 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001566' Avg. expression score for this sample: '420.889' Avg. expression score in LCM sample: '147.141' Tissue used: 'full endosperm' |
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| AT5G54870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.28581 x 10-1 | 20 | 11 | 3 | 9 | 64.52% | 75.00% | 31 | 12 | TAIR8 |
Avg. embryo expression (dissected): '157.642' Avg. embryo expression (LCM): '77.5367' |
||||
| AT5G54870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.38421 x 10-1 | 21 | 1 | 95.45% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.84747 x 10-1 | 26 | 2 | 92.86% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54865 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G54865 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54865 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G54865 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G54865 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G54865 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G54860 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1336 x 10-2 | 668 | 179 | 78.87% | 847 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.80717 x 10-1 | 43 | 24 | 33 | 89 | 64.18% | 72.95% | 67 | 122 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.045593' Avg. expression score for this sample: '29.2332' Avg. expression score in LCM sample: '22.9875' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.2363 x 10-2 | 75 | 41 | 38 | 156 | 64.66% | 80.41% | 116 | 194 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.045593' Avg. expression score for this sample: '33.0111' Avg. expression score in LCM sample: '22.9875' Tissue used: 'full endosperm' |
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| AT5G54860 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.08718 x 10-1 | 39 | 54 | 25 | 25 | 41.94% | 50.00% | 93 | 50 | TAIR8 |
Avg. embryo expression (dissected): '36.7597' Avg. embryo expression (LCM): '11.2274' |
||||
| AT5G54860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.39469 x 10-1 | 19 | 5 | 79.17% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-7 | 510 | 88 | 85.28% | 598 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54855 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.6 x 10-13 | 729 | 162 | 81.82% | 891 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54855 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 311 | 245 | 160 | 501 | 55.94% | 75.79% | 556 | 661 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000039' Avg. expression score for this sample: '1637.51' Avg. expression score in LCM sample: '411.953' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54855 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.1 x 10-6 | 895 | 657 | 430 | 1856 | 57.67% | 81.19% | 1552 | 2286 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000039' Avg. expression score for this sample: '2223.55' Avg. expression score in LCM sample: '411.953' Tissue used: 'full endosperm' |
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| AT5G54855 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.62391 x 10-1 | 144 | 221 | 50 | 82 | 39.45% | 62.12% | 365 | 132 | TAIR8 |
Avg. embryo expression (dissected): '1069.78' Avg. embryo expression (LCM): '328.997' |
||||
| AT5G54855 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-14 | 413 | 66 | 86.22% | 479 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54855 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1140 | 128 | 89.91% | 1268 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 121 | 51 | 70.35% | 172 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.85819 x 10-1 | 59 | 93 | 30 | 135 | 38.82% | 81.82% | 152 | 165 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.149764' Avg. expression score for this sample: '164.12' Avg. expression score in LCM sample: '41.7421' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.54 x 10-4 | 71 | 54 | 30 | 226 | 56.80% | 88.28% | 125 | 256 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.149764' Avg. expression score for this sample: '158.235' Avg. expression score in LCM sample: '41.7421' Tissue used: 'full endosperm' |
|||||
| AT5G54850 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.6214 x 10-2 | 60 | 131 | 15 | 40 | 31.41% | 72.73% | 191 | 55 | TAIR8 |
Avg. embryo expression (dissected): '195.938' Avg. embryo expression (LCM): '150.113' |
||||
| AT5G54850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.79229 x 10-1 | 21 | 5 | 80.77% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-7 | 152 | 19 | 88.89% | 171 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54840 | SGP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 77 | 4 | 95.06% | 81 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54840 | SGP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.76471 x 10-1 | 0 | 1 | 0 | 8 | 0.00% | 100.00% | 1 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000105' Avg. expression score for this sample: '4.916' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G54840 | SGP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.56 x 10-4 | 8 | 1 | 0 | 37 | 88.89% | 100.00% | 9 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000105' Avg. expression score for this sample: '48.1517' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT5G54840 | SGP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 1 | 0 | 1 | 66.67% | 100.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '5.97515' Avg. embryo expression (LCM): '13.1112' |
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| AT5G54840 | SGP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.7032 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54840 | SGP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.22639 x 10-1 | 61 | 0 | 100.00% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7102 x 10-2 | 246 | 33 | 88.17% | 279 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 15 | 13 | 8 | 28 | 53.57% | 77.78% | 28 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000484' Avg. expression score for this sample: '69.8162' Avg. expression score in LCM sample: '65.1853' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.6 x 10-5 | 56 | 16 | 14 | 110 | 77.78% | 88.71% | 72 | 124 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000484' Avg. expression score for this sample: '137.521' Avg. expression score in LCM sample: '65.1853' Tissue used: 'full endosperm' |
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| AT5G54830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.13605 x 10-1 | 10 | 12 | 4 | 10 | 45.45% | 71.43% | 22 | 14 | TAIR8 |
Avg. embryo expression (dissected): '73.5303' Avg. embryo expression (LCM): '43.6787' |
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| AT5G54830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.51454 x 10-1 | 14 | 5 | 73.68% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.2188 x 10-2 | 162 | 24 | 87.10% | 186 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.4 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.255548' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G54820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT5G54820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G54820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.83077 x 10-1 | 12 | 12 | 50.00% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54810 | TSB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.8 x 10-5 | 45 | 5 | 90.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54810 | TSB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 5 | 2 | 5 | 54.55% | 71.43% | 11 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.307449' Avg. expression score for this sample: '201.093' Avg. expression score in LCM sample: '77.6344' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54810 | TSB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.11392 x 10-1 | 10 | 3 | 13 | 6 | 76.92% | 31.58% | 13 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.307449' Avg. expression score for this sample: '159.921' Avg. expression score in LCM sample: '77.6344' Tissue used: 'full endosperm' |
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| AT5G54810 | TSB1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 12 | 12 | 3 | 2 | 50.00% | 40.00% | 24 | 5 | TAIR8 |
Avg. embryo expression (dissected): '405.836' Avg. embryo expression (LCM): '231.417' |
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| AT5G54810 | TSB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.1763 x 10-1 | 6 | 3 | 66.67% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54810 | TSB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.23777 x 10-1 | 19 | 28 | 40.43% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54800 | GPT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0639 x 10-2 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54800 | GPT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 6 | 7 | 12 | 62.50% | 63.16% | 16 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.049299' Avg. expression score for this sample: '159.891' Avg. expression score in LCM sample: '122.331' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54800 | GPT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.095 x 10-3 | 19 | 3 | 3 | 36 | 86.36% | 92.31% | 22 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.049299' Avg. expression score for this sample: '161.521' Avg. expression score in LCM sample: '122.331' Tissue used: 'full endosperm' |
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| AT5G54800 | GPT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.70713 x 10-1 | 5 | 17 | 2 | 3 | 22.73% | 60.00% | 22 | 5 | TAIR8 |
Avg. embryo expression (dissected): '183.695' Avg. embryo expression (LCM): '124.983' |
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| AT5G54800 | GPT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.98811 x 10-1 | 14 | 1 | 93.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54800 | GPT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2651 x 10-2 | 24 | 0 | 100.00% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G54790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G54790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G54790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G54790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT5G54790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G54790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G54780 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 37 | 4 | 90.24% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G54780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 2 | 66.67% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.044234' Avg. expression score for this sample: '6.97452' Avg. expression score in LCM sample: '1.71966' Tissue used: 'pure endosperm, no chalazal' |