| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G21800 | UGT71B8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.48151 x 10-1 | 40 | 37 | 15 | 36 | 51.95% | 70.59% | 77 | 51 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.847498' Avg. expression score for this sample: '155.537' Avg. expression score in LCM sample: '181.519' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21800 | UGT71B8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.41647 x 10-1 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21800 | UGT71B8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.09669 x 10-1 | 29 | 10 | 17 | 61 | 74.36% | 78.21% | 39 | 78 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.847498' Avg. expression score for this sample: '54.5634' Avg. expression score in LCM sample: '181.519' Tissue used: 'full endosperm' |
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| AT3G21800 | UGT71B8 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.181 x 10-3 | 99 | 44 | 9 | 5 | 69.23% | 35.71% | 143 | 14 | TAIR8 |
Avg. embryo expression (dissected): '171.292' Avg. embryo expression (LCM): '76.3561' |
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| AT3G21790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '87.9744' Avg. embryo expression (LCM): '7.59794' |
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| AT3G21790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.15528 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.15414 x 10-1 | 7 | 17 | 6 | 19 | 29.17% | 76.00% | 24 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.117982' Avg. expression score for this sample: '1330.68' Avg. expression score in LCM sample: '233.271' Tissue used: 'full endosperm' |
|||||
| AT3G21790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.64427 x 10-1 | 2 | 6 | 25.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.2381 x 10-1 | 0 | 2 | 2 | 1 | 0.00% | 33.33% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.117982' Avg. expression score for this sample: '1588.69' Avg. expression score in LCM sample: '233.271' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G21781 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.777013' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G21781 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21781 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.548266' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT3G21781 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G21781 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21781 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21780 | UGT71B6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.6 x 10-5 | 120 | 18 | 86.96% | 138 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21780 | UGT71B6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.5 x 10-9 | 36 | 52 | 40.91% | 88 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21780 | UGT71B6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6 x 10-5 | 808 | 121 | 210 | 157 | 86.98% | 42.78% | 929 | 367 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000494' Avg. expression score for this sample: '161.977' Avg. expression score in LCM sample: '33.5406' Tissue used: 'full endosperm' |
||||
| AT3G21780 | UGT71B6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.68152 x 10-1 | 26 | 16 | 61.90% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21780 | UGT71B6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.55299 x 10-1 | 374 | 86 | 151 | 107 | 81.30% | 41.47% | 460 | 258 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000494' Avg. expression score for this sample: '131.358' Avg. expression score in LCM sample: '33.5406' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G21780 | UGT71B6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.4614 x 10-2 | 15 | 1 | 3 | 3 | 93.75% | 50.00% | 16 | 6 | TAIR8 |
Avg. embryo expression (dissected): '6.11527' Avg. embryo expression (LCM): '.841425' |
|||
| AT3G21770 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.470919' Avg. embryo expression (LCM): '0' |
||||||
| AT3G21770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21770 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.30769 x 10-1 | 7 | 0 | 0 | 0 | 100.00% | 7 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '3.33068' Avg. expression score in LCM sample: '3.57159' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G21770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.1 x 10-5 | 2 | 14 | 12.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '1.46738' Avg. expression score in LCM sample: '3.57159' Tissue used: 'full endosperm' |
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| AT3G21760 | HYR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.3768 x 10-1 | 26 | 17 | 12 | 23 | 60.47% | 65.71% | 43 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.918346' Avg. expression score for this sample: '258.89' Avg. expression score in LCM sample: '70.1532' Tissue used: 'full endosperm' |
||||
| AT3G21760 | HYR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.8345 x 10-2 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21760 | HYR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 54 | 21 | 23 | 36 | 72.00% | 61.02% | 75 | 59 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.918346' Avg. expression score for this sample: '255.266' Avg. expression score in LCM sample: '70.1532' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G21760 | HYR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.89188 x 10-1 | 11 | 20 | 3 | 4 | 35.48% | 57.14% | 31 | 7 | TAIR8 |
Avg. embryo expression (dissected): '101.811' Avg. embryo expression (LCM): '49.5813' |
|||
| AT3G21760 | HYR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21760 | HYR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.2692 x 10-1 | 5 | 5 | 50.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21755 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.10878 x 10-1 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21755 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21755 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 44 | 23 | 20 | 40 | 65.67% | 66.67% | 67 | 60 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.77532' Avg. expression score for this sample: '292.645' Avg. expression score in LCM sample: '75.4738' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G21755 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.28798 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21755 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.81747 x 10-1 | 60 | 24 | 13 | 27 | 71.43% | 67.50% | 84 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.77532' Avg. expression score for this sample: '212.837' Avg. expression score in LCM sample: '75.4738' Tissue used: 'full endosperm' |
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| AT3G21755 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.61998 x 10-1 | 13 | 16 | 2 | 11 | 44.83% | 84.62% | 29 | 13 | TAIR8 |
Avg. embryo expression (dissected): '131.475' Avg. embryo expression (LCM): '35.7292' |
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| AT3G21750 | UGT71B1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.61998 x 10-1 | 22 | 12 | 6 | 2 | 64.71% | 25.00% | 34 | 8 | TAIR8 |
Avg. embryo expression (dissected): '235.584' Avg. embryo expression (LCM): '46.1653' |
|||
| AT3G21750 | UGT71B1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.8 x 10-23 | 523 | 7 | 98.68% | 530 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21750 | UGT71B1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 16 | 3 | 84.21% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21750 | UGT71B1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2 x 10-6 | 130 | 18 | 28 | 113 | 87.84% | 80.14% | 148 | 141 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.6e-06' Avg. expression score for this sample: '308.904' Avg. expression score in LCM sample: '73.0927' Tissue used: 'full endosperm' |
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| AT3G21750 | UGT71B1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.6 x 10-19 | 285 | 1 | 99.65% | 286 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21750 | UGT71B1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.62848 x 10-1 | 80 | 28 | 10 | 32 | 74.07% | 76.19% | 108 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.6e-06' Avg. expression score for this sample: '374.86' Avg. expression score in LCM sample: '73.0927' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21740 | APO4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 38 | 14 | 13 | 20 | 73.08% | 60.61% | 52 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.064594' Avg. expression score for this sample: '33.1337' Avg. expression score in LCM sample: '17.7698' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21740 | APO4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.17706 x 10-1 | 67 | 16 | 80.72% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21740 | APO4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.876 x 10-3 | 44 | 2 | 9 | 23 | 95.65% | 71.88% | 46 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.064594' Avg. expression score for this sample: '23.4977' Avg. expression score in LCM sample: '17.7698' Tissue used: 'full endosperm' |
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| AT3G21740 | APO4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.343 x 10-2 | 49 | 29 | 7 | 13 | 62.82% | 65.00% | 78 | 20 | TAIR8 |
Avg. embryo expression (dissected): '54.3659' Avg. embryo expression (LCM): '45.5625' |
|||
| AT3G21740 | APO4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.864 x 10-3 | 22 | 0 | 100.00% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21740 | APO4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.551 x 10-2 | 61 | 6 | 91.04% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21730 | FOLB3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G21730 | FOLB3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21730 | FOLB3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '10.9823' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G21730 | FOLB3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21730 | FOLB3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3.13255' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21730 | FOLB3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.786777' Avg. embryo expression (LCM): '0' |
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| AT3G21720 | ICL | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '89.4406' Avg. embryo expression (LCM): '0' |
|||||
| AT3G21720 | ICL | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21720 | ICL | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21720 | ICL | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.11989' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21720 | ICL | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21720 | ICL | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '70.2021' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G21710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2 x 10-7 | 18 | 0 | 3 | 68 | 100.00% | 95.77% | 18 | 71 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.3e-07' Avg. expression score for this sample: '54.8261' Avg. expression score in LCM sample: '3.64508' Tissue used: 'full endosperm' |
|||||
| AT3G21710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.79915 x 10-1 | 24 | 0 | 100.00% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 3 | 75.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.3e-07' Avg. expression score for this sample: '13.1784' Avg. expression score in LCM sample: '3.64508' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21710 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.854466' Avg. embryo expression (LCM): '0' |
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| AT3G21710 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.29148 x 10-1 | 75 | 0 | 100.00% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.22456 x 10-1 | 38 | 0 | 100.00% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21700 | SGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21700 | SGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '14.7109' Avg. expression score in LCM sample: '16.5058' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21700 | SGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21700 | SGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21700 | SGP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '29.8198' Avg. expression score in LCM sample: '16.5058' Tissue used: 'full endosperm' |
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| AT3G21700 | SGP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.01764' Avg. embryo expression (LCM): '1.00469' |
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| AT3G21690 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.00915 x 10-1 | 212 | 133 | 92 | 66 | 61.45% | 41.77% | 345 | 158 | TAIR8 |
Avg. embryo expression (dissected): '215.236' Avg. embryo expression (LCM): '276.351' |
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| AT3G21690 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-6 | 186 | 37 | 83.41% | 223 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.55 x 10-4 | 22 | 29 | 43.14% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.03308 x 10-1 | 183 | 62 | 83 | 146 | 74.69% | 63.76% | 245 | 229 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.645498' Avg. expression score for this sample: '111.98' Avg. expression score in LCM sample: '135.265' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.51135 x 10-1 | 169 | 67 | 134 | 228 | 71.61% | 62.98% | 236 | 362 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.645498' Avg. expression score for this sample: '108.96' Avg. expression score in LCM sample: '135.265' Tissue used: 'full endosperm' |
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| AT3G21690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.42 x 10-4 | 52 | 7 | 88.14% | 59 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 3 | 1 | 0 | 0 | 75.00% | 4 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.51193' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G21680 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.42608' Avg. embryo expression (LCM): '0' |
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| AT3G21680 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21680 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21680 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.1e-06' Avg. expression score for this sample: '5.52156' Avg. expression score in LCM sample: '2.04301' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21670 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 38 | 0 | 100.00% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.5 x 10-6 | 29 | 0 | 0 | 18 | 100.00% | 100.00% | 29 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.1e-06' Avg. expression score for this sample: '26.2919' Avg. expression score in LCM sample: '2.04301' Tissue used: 'full endosperm' |
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| AT3G21670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21670 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.944793' Avg. embryo expression (LCM): '5.24949' |
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| AT3G21660 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.669972' Avg. embryo expression (LCM): '0' |
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| AT3G21660 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G21660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.39957' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G21660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G21660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.42749' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |