| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G55370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.02567 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.05514 x 10-1 | 224 | 355 | 160 | 911 | 38.69% | 85.06% | 579 | 1071 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.725124' Avg. expression score for this sample: '644.646' Avg. expression score in LCM sample: '268.795' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.69533 x 10-1 | 126 | 169 | 41 | 225 | 42.71% | 84.59% | 295 | 266 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.725124' Avg. expression score for this sample: '207.623' Avg. expression score in LCM sample: '268.795' Tissue used: 'full endosperm' |
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| AT5G55360 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 48 | 0 | 43 | 7.69% | 100.00% | 52 | 43 | TAIR8 |
Avg. embryo expression (dissected): '57.3891' Avg. embryo expression (LCM): '24.439' |
||||
| AT5G55360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.64087 x 10-1 | 101 | 39 | 72.14% | 140 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55360 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0035 | 3 | 9 | 25.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 2 | 2 | 3 | 71.43% | 60.00% | 7 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.7357' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 12 | 7 | 1 | 5 | 63.16% | 83.33% | 19 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.46975' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G55350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 5 | 1 | 0 | 44.44% | 0.00% | 9 | 1 | TAIR8 |
Avg. embryo expression (dissected): '3.23754' Avg. embryo expression (LCM): '3.62943' |
||||
| AT5G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.45125' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.26386' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G55340 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '34.0795' Avg. embryo expression (LCM): '68.5573' |
||||||
| AT5G55340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55340 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.493106' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.33467' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G55330 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G55330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55330 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.56106' Avg. expression score in LCM sample: '5.77628' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G55320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '16.4223' Avg. expression score in LCM sample: '5.77628' Tissue used: 'full endosperm' |
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| AT5G55320 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.854724' Avg. embryo expression (LCM): '0' |
||||||
| AT5G55320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55320 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55310 | TOP1BETA | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.51317 x 10-1 | 7 | 6 | 3 | 5 | 53.85% | 62.50% | 13 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '136.246' Avg. expression score in LCM sample: '62.1281' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55310 | TOP1BETA | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.51915 x 10-1 | 13 | 6 | 14 | 33 | 68.42% | 70.21% | 19 | 47 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '215.687' Avg. expression score in LCM sample: '62.1281' Tissue used: 'full endosperm' |
||||
| AT5G55310 | TOP1BETA | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.2381 x 10-1 | 0 | 2 | 2 | 1 | 0.00% | 33.33% | 2 | 3 | TAIR8 |
Avg. embryo expression (dissected): '106.271' Avg. embryo expression (LCM): '63.3706' |
|||
| AT5G55310 | TOP1BETA | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.48264 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55310 | TOP1BETA | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.435 x 10-3 | 47 | 6 | 88.68% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55310 | TOP1BETA | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.92 x 10-4 | 66 | 6 | 91.67% | 72 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55300 | TOP1ALPHA | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 41 | 29 | 27 | 68 | 58.57% | 71.58% | 70 | 95 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.012831' Avg. expression score for this sample: '173.307' Avg. expression score in LCM sample: '70.697' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G55300 | TOP1ALPHA | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.56 x 10-3 | 214 | 71 | 75 | 216 | 75.09% | 74.23% | 285 | 291 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.012831' Avg. expression score for this sample: '409.788' Avg. expression score in LCM sample: '70.697' Tissue used: 'full endosperm' |
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| AT5G55300 | TOP1ALPHA | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.24517 x 10-1 | 64 | 72 | 24 | 18 | 47.06% | 42.86% | 136 | 42 | TAIR8 |
Avg. embryo expression (dissected): '254.43' Avg. embryo expression (LCM): '262.851' |
|||
| AT5G55300 | TOP1ALPHA | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.6468 x 10-2 | 51 | 9 | 85.00% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55300 | TOP1ALPHA | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.76757 x 10-1 | 289 | 126 | 69.64% | 415 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55300 | TOP1ALPHA | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.4 x 10-6 | 458 | 90 | 83.58% | 548 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '28.2393' Avg. expression score in LCM sample: '21.0033' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '80.359' Avg. expression score in LCM sample: '21.0033' Tissue used: 'full endosperm' |
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| AT5G55290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '33.5345' Avg. embryo expression (LCM): '11.9558' |
||||||
| AT5G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55280 | FTSZ1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '88.7389' Avg. expression score in LCM sample: '43.9174' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55280 | FTSZ1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '150.731' Avg. expression score in LCM sample: '43.9174' Tissue used: 'full endosperm' |
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| AT5G55280 | FTSZ1-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '485.23' Avg. embryo expression (LCM): '391.099' |
|||||
| AT5G55280 | FTSZ1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55280 | FTSZ1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55280 | FTSZ1-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.24416' Avg. expression score in LCM sample: '3.5128' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.08909' Avg. expression score in LCM sample: '3.5128' Tissue used: 'full endosperm' |
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| AT5G55270 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.40428' Avg. embryo expression (LCM): '0' |
||||||
| AT5G55270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55270 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G55260 | PPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '51.9715' Avg. expression score in LCM sample: '38.8466' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55260 | PPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 1 | 1 | 4 | 66.67% | 80.00% | 3 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '54.6479' Avg. expression score in LCM sample: '38.8466' Tissue used: 'full endosperm' |
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| AT5G55260 | PPX2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '83.0947' Avg. embryo expression (LCM): '75.6152' |
||||
| AT5G55260 | PPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55260 | PPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.25 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55260 | PPX2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.27972 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55250 | IAMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.1 x 10-12 | 221 | 14 | 25 | 91 | 94.04% | 78.45% | 235 | 116 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.8e-38' Avg. expression score for this sample: '112.508' Avg. expression score in LCM sample: '14.0218' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55250 | IAMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.0 x 10-27 | 148 | 23 | 24 | 383 | 86.55% | 94.10% | 171 | 407 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.8e-38' Avg. expression score for this sample: '162.761' Avg. expression score in LCM sample: '14.0218' Tissue used: 'full endosperm' |
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| AT5G55250 | IAMT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.6365 x 10-2 | 326 | 213 | 121 | 78 | 60.48% | 39.20% | 539 | 199 | TAIR8 |
Avg. embryo expression (dissected): '350.524' Avg. embryo expression (LCM): '293.921' |
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| AT5G55250 | IAMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.96116 x 10-1 | 172 | 11 | 93.99% | 183 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55250 | IAMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.23838 x 10-1 | 429 | 31 | 93.26% | 460 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55250 | IAMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.7 x 10-16 | 1827 | 42 | 97.75% | 1869 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55240 | ATPXG2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.43 x 10-3 | 201 | 141 | 106 | 484 | 58.77% | 82.03% | 342 | 590 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000766' Avg. expression score for this sample: '281.142' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55240 | ATPXG2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3 x 10-7 | 1037 | 932 | 467 | 1115 | 52.67% | 70.48% | 1969 | 1582 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000766' Avg. expression score for this sample: '828.757' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G55240 | ATPXG2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.30356 x 10-1 | 348 | 421 | 79 | 223 | 45.25% | 73.84% | 769 | 302 | TAIR8 |
Avg. embryo expression (dissected): '518.232' Avg. embryo expression (LCM): '3.94339' |
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| AT5G55240 | ATPXG2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.3257 x 10-1 | 542 | 299 | 64.45% | 841 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55240 | ATPXG2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.3627 x 10-2 | 57 | 51 | 52.78% | 108 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55240 | ATPXG2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.16634 x 10-1 | 38 | 26 | 59.38% | 64 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55230 | MAP65-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.70324 x 10-1 | 99 | 140 | 53 | 220 | 41.42% | 80.59% | 239 | 273 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.184381' Avg. expression score for this sample: '566.138' Avg. expression score in LCM sample: '214.443' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55230 | MAP65-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.398 x 10-3 | 219 | 155 | 118 | 500 | 58.56% | 80.91% | 374 | 618 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.184381' Avg. expression score for this sample: '523.111' Avg. expression score in LCM sample: '214.443' Tissue used: 'full endosperm' |
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| AT5G55230 | MAP65-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.596 x 10-3 | 117 | 211 | 19 | 29 | 35.67% | 60.42% | 328 | 48 | TAIR8 |
Avg. embryo expression (dissected): '689.855' Avg. embryo expression (LCM): '521.231' |
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| AT5G55230 | MAP65-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.34 x 10-3 | 104 | 23 | 81.89% | 127 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55230 | MAP65-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-15 | 158 | 9 | 94.61% | 167 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55230 | MAP65-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.4 x 10-18 | 165 | 6 | 96.49% | 171 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G55220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.3553 | 55 | 33 | 16 | 20 | 62.50% | 55.56% | 88 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.089777' Avg. expression score for this sample: '42.3134' Avg. expression score in LCM sample: '14.257' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.7676 x 10-1 | 79 | 58 | 90 | 159 | 57.66% | 63.86% | 137 | 249 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.089777' Avg. expression score for this sample: '68.8245' Avg. expression score in LCM sample: '14.257' Tissue used: 'full endosperm' |
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| AT5G55220 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.83789 x 10-1 | 188 | 186 | 31 | 20 | 50.27% | 39.22% | 374 | 51 | TAIR8 |
Avg. embryo expression (dissected): '183.915' Avg. embryo expression (LCM): '273.363' |
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| AT5G55220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.3899 x 10-2 | 8 | 12 | 40.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.1656 x 10-2 | 28 | 8 | 77.78% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55220 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-8 | 94 | 13 | 87.85% | 107 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.85824 x 10-1 | 16 | 5 | 6 | 18 | 76.19% | 75.00% | 21 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042572' Avg. expression score for this sample: '793.915' Avg. expression score in LCM sample: '334.436' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.9181 x 10-2 | 35 | 6 | 13 | 38 | 85.37% | 74.51% | 41 | 51 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042572' Avg. expression score for this sample: '455.451' Avg. expression score in LCM sample: '334.436' Tissue used: 'full endosperm' |
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| AT5G55210 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.40541 x 10-1 | 15 | 11 | 2 | 9 | 57.69% | 81.82% | 26 | 11 | TAIR8 |
Avg. embryo expression (dissected): '1212.44' Avg. embryo expression (LCM): '911.489' |
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| AT5G55210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.28481 x 10-1 | 9 | 3 | 75.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.03025 x 10-1 | 31 | 6 | 83.78% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55210 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.339 x 10-3 | 45 | 2 | 95.74% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G55200 | MGE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.05438 x 10-1 | 8 | 6 | 5 | 19 | 57.14% | 79.17% | 14 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.9016' Avg. expression score in LCM sample: '2.38106' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G55200 | MGE1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.36046 x 10-1 | 15 | 13 | 6 | 17 | 53.57% | 73.91% | 28 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '21.3781' Avg. expression score in LCM sample: '2.38106' Tissue used: 'full endosperm' |