| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G25070 | RIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.03857 x 10-1 | 16 | 1 | 94.12% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25070 | RIN4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.20891 x 10-1 | 12 | 3 | 1 | 9 | 80.00% | 90.00% | 15 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.170634' Avg. expression score for this sample: '17.5484' Avg. expression score in LCM sample: '1.3816' Tissue used: 'full endosperm' |
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| AT3G25060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.30485 x 10-1 | 24 | 6 | 9 | 11 | 80.00% | 55.00% | 30 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.456985' Avg. expression score for this sample: '12.0166' Avg. expression score in LCM sample: '3.26294' Tissue used: 'full endosperm' |
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| AT3G25060 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.94912 x 10-1 | 7 | 17 | 3 | 3 | 29.17% | 50.00% | 24 | 6 | TAIR8 |
Avg. embryo expression (dissected): '14.7812' Avg. embryo expression (LCM): '13.9149' |
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| AT3G25060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G25060 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 21 | 8 | 72.41% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G25060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.59286 x 10-1 | 34 | 10 | 77.27% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G25060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.85082 x 10-1 | 4 | 1 | 2 | 9 | 80.00% | 81.82% | 5 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.456985' Avg. expression score for this sample: '4.7355' Avg. expression score in LCM sample: '3.26294' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G25050 | XTH3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.123 x 10-2 | 1 | 0 | 2 | 21 | 100.00% | 91.30% | 1 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.073755' Avg. expression score for this sample: '8.8553' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G25050 | XTH3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25050 | XTH3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.073755' Avg. expression score for this sample: '.332588' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT3G25050 | XTH3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G25050 | XTH3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 2 | 0 | 1 | 50.00% | 100.00% | 4 | 1 | TAIR8 |
Avg. embryo expression (dissected): '1.75158' Avg. embryo expression (LCM): '0' |
|||
| AT3G25050 | XTH3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G25040 | ERD2B | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.11001 x 10-1 | 49 | 28 | 63.64% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25040 | ERD2B | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.3 x 10-25 | 659 | 54 | 92.43% | 713 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25040 | ERD2B | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 53 | 51 | 20 | 16 | 50.96% | 44.44% | 104 | 36 | TAIR8 |
Avg. embryo expression (dissected): '208.027' Avg. embryo expression (LCM): '215.995' |
|||
| AT3G25040 | ERD2B | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.67987 x 10-1 | 343 | 117 | 74.57% | 460 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25040 | ERD2B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.16502 x 10-1 | 95 | 26 | 31 | 67 | 78.51% | 68.37% | 121 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010911' Avg. expression score for this sample: '194.568' Avg. expression score in LCM sample: '117.422' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G25040 | ERD2B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.9752 x 10-2 | 205 | 54 | 110 | 219 | 79.15% | 66.57% | 259 | 329 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010911' Avg. expression score for this sample: '266.971' Avg. expression score in LCM sample: '117.422' Tissue used: 'full endosperm' |
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| AT3G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.6041 x 10-2 | 651 | 143 | 260 | 278 | 81.99% | 51.67% | 794 | 538 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.056654' Avg. expression score for this sample: '521.686' Avg. expression score in LCM sample: '291.842' Tissue used: 'full endosperm' |
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| AT3G25030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.5 x 10-14 | 770 | 208 | 256 | 85 | 78.73% | 24.93% | 978 | 341 | TAIR8 |
Avg. embryo expression (dissected): '752.692' Avg. embryo expression (LCM): '350.924' |
||||
| AT3G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.451 x 10-3 | 65 | 52 | 55.56% | 117 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.5 x 10-7 | 88 | 9 | 90.72% | 97 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.47438 x 10-1 | 1424 | 244 | 713 | 619 | 85.37% | 46.47% | 1668 | 1332 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.056654' Avg. expression score for this sample: '1136.83' Avg. expression score in LCM sample: '291.842' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G25030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-10 | 70 | 1 | 98.59% | 71 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G25020 | RLP42 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.00585 x 10-1 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25020 | RLP42 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.61428 x 10-1 | 23 | 8 | 10 | 29 | 74.19% | 74.36% | 31 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.330497' Avg. expression score for this sample: '20.6587' Avg. expression score in LCM sample: '15.4034' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G25020 | RLP42 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.75188 x 10-1 | 30 | 12 | 3 | 8 | 71.43% | 72.73% | 42 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.330497' Avg. expression score for this sample: '31.7876' Avg. expression score in LCM sample: '15.4034' Tissue used: 'full endosperm' |
||||
| AT3G25020 | RLP42 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.944 x 10-3 | 21 | 0 | 100.00% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25020 | RLP42 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.91609 x 10-1 | 46 | 25 | 22 | 13 | 64.79% | 37.14% | 71 | 35 | TAIR8 |
Avg. embryo expression (dissected): '53.5586' Avg. embryo expression (LCM): '31.4844' |
|||
| AT3G25020 | RLP42 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.6434 x 10-2 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25014 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G25014 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G25014 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.80324' Avg. embryo expression (LCM): '15.5978' |
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| AT3G25014 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G25014 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G25014 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.16184' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G25011 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.60113' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G25011 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '15.7451' Avg. embryo expression (LCM): '0' |
||||||
| AT3G25011 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G25011 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G25011 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G25011 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '9.11281' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G25010 | RLP41 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.81853 x 10-1 | 53 | 10 | 27 | 31 | 84.13% | 53.45% | 63 | 58 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015881' Avg. expression score for this sample: '18.9647' Avg. expression score in LCM sample: '14.4481' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G25010 | RLP41 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.9288 x 10-2 | 51 | 28 | 64.56% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25010 | RLP41 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.479 x 10-3 | 153 | 27 | 30 | 44 | 85.00% | 59.46% | 180 | 74 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015881' Avg. expression score for this sample: '30.2774' Avg. expression score in LCM sample: '14.4481' Tissue used: 'full endosperm' |
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| AT3G25010 | RLP41 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.9 x 10-5 | 70 | 4 | 94.59% | 74 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G25010 | RLP41 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.70363 x 10-1 | 60 | 53 | 35 | 11 | 53.10% | 23.91% | 113 | 46 | TAIR8 |
Avg. embryo expression (dissected): '37.4408' Avg. embryo expression (LCM): '18.9886' |
|||
| AT3G25010 | RLP41 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.17266 x 10-1 | 7 | 3 | 70.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24982 | RLP40 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.6584 x 10-2 | 3 | 4 | 42.86% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24982 | RLP40 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.73 x 10-4 | 63 | 5 | 92.65% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24982 | RLP40 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.59709 x 10-1 | 19 | 24 | 9 | 11 | 44.19% | 55.00% | 43 | 20 | TAIR8 |
Avg. embryo expression (dissected): '68.6063' Avg. embryo expression (LCM): '49.7445' |
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| AT3G24982 | RLP40 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.50915 x 10-1 | 25 | 14 | 64.10% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24982 | RLP40 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 13 | 10 | 6 | 17 | 56.52% | 73.91% | 23 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.191846' Avg. expression score for this sample: '31.7202' Avg. expression score in LCM sample: '33.4231' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G24982 | RLP40 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.1871 x 10-2 | 77 | 26 | 12 | 40 | 74.76% | 76.92% | 103 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.191846' Avg. expression score for this sample: '45.5513' Avg. expression score in LCM sample: '33.4231' Tissue used: 'full endosperm' |
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| AT3G24900 | RLP39 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.44807 x 10-1 | 54 | 206 | 7 | 338 | 20.77% | 97.97% | 260 | 345 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.124616' Avg. expression score for this sample: '43.582' Avg. expression score in LCM sample: '12.7431' Tissue used: 'full endosperm' |
||||
| AT3G24900 | RLP39 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.53 x 10-4 | 28 | 409 | 7 | 247 | 6.41% | 97.24% | 437 | 254 | TAIR8 |
Avg. embryo expression (dissected): '110.315' Avg. embryo expression (LCM): '33.5942' |
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| AT3G24900 | RLP39 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.4 x 10-20 | 156 | 2 | 98.73% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24900 | RLP39 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.14007 x 10-1 | 24 | 12 | 66.67% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24900 | RLP39 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.171 x 10-3 | 9 | 125 | 4 | 387 | 6.72% | 98.98% | 134 | 391 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.124616' Avg. expression score for this sample: '51.986' Avg. expression score in LCM sample: '12.7431' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G24900 | RLP39 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 229 | 0 | 100.00% | 229 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24890 | VAMP728 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24890 | VAMP728 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 2 | 2 | 4 | 80.00% | 66.67% | 10 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.364086' Avg. expression score for this sample: '11.08' Avg. expression score in LCM sample: '3.71857' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G24890 | VAMP728 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.04764 x 10-1 | 9 | 2 | 5 | 16 | 81.82% | 76.19% | 11 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.364086' Avg. expression score for this sample: '14.9418' Avg. expression score in LCM sample: '3.71857' Tissue used: 'full endosperm' |
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| AT3G24890 | VAMP728 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8194 x 10-1 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24890 | VAMP728 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.34842 x 10-1 | 7 | 2 | 0 | 0 | 77.78% | 9 | 0 | TAIR8 |
Avg. embryo expression (dissected): '6.59821' Avg. embryo expression (LCM): '3.17732' |
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| AT3G24890 | VAMP728 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G24880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.1124 x 10-1 | 66 | 28 | 70.21% | 94 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.89 x 10-4 | 181 | 37 | 83.03% | 218 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.86991 x 10-1 | 80 | 116 | 44 | 68 | 40.82% | 60.71% | 196 | 112 | TAIR8 |
Avg. embryo expression (dissected): '112.279' Avg. embryo expression (LCM): '73.9072' |
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| AT3G24880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.71224 x 10-1 | 97 | 98 | 40 | 195 | 49.74% | 82.98% | 195 | 235 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.041313' Avg. expression score for this sample: '75.7564' Avg. expression score in LCM sample: '42.1536' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G24880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-15 | 303 | 27 | 91.82% | 330 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.2647 x 10-2 | 95 | 67 | 40 | 222 | 58.64% | 84.73% | 162 | 262 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.041313' Avg. expression score for this sample: '95.965' Avg. expression score in LCM sample: '42.1536' Tissue used: 'full endosperm' |
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| AT3G24870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 3 | 4 | 6 | 62.50% | 60.00% | 8 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '78.5067' Avg. expression score in LCM sample: '43.2854' Tissue used: 'full endosperm' |
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| AT3G24870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 2 | 1 | 33.33% | 0 | 3 | TAIR8 |
Avg. embryo expression (dissected): '101.334' Avg. embryo expression (LCM): '61.9766' |
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| AT3G24870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.55769 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.9598 x 10-2 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.63985 x 10-1 | 2 | 4 | 33.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 3 | 60.00% | 0 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '59.275' Avg. expression score in LCM sample: '43.2854' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G24860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.77713 x 10-1 | 2 | 4 | 3 | 5 | 33.33% | 62.50% | 6 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.467931' Avg. expression score for this sample: '93.6198' Avg. expression score in LCM sample: '31.9239' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G24860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.36918 x 10-1 | 48 | 12 | 80.00% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0401 x 10-1 | 23 | 5 | 7 | 24 | 82.14% | 77.42% | 28 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.467931' Avg. expression score for this sample: '76.2764' Avg. expression score in LCM sample: '31.9239' Tissue used: 'full endosperm' |
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| AT3G24860 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.00361 x 10-1 | 52 | 11 | 82.54% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24860 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 2 | 5 | 1 | 0 | 28.57% | 0.00% | 7 | 1 | TAIR8 |
Avg. embryo expression (dissected): '117.597' Avg. embryo expression (LCM): '122.145' |
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| AT3G24860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.86496 x 10-1 | 4 | 3 | 57.14% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G24850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G24850 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.269065' Avg. embryo expression (LCM): '0' |
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| AT3G24850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G24850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G24850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 2.30769 x 10-1 | 7 | 0 | 0 | 0 | 100.00% | 7 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '2.51522' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G24840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '289.181' Avg. expression score in LCM sample: '17.3729' Tissue used: 'full endosperm' |
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| AT3G24840 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '8.71239' Avg. embryo expression (LCM): '6.17882' |
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| AT3G24840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G24840 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G24840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '39.1409' Avg. expression score in LCM sample: '17.3729' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G24840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G24830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.0135 x 10-2 | 73 | 24 | 75.26% | 97 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G24830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.83261 x 10-1 | 15 | 40 | 2 | 40 | 27.27% | 95.24% | 55 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.309862' Avg. expression score for this sample: '2290.55' Avg. expression score in LCM sample: '1296.5' Tissue used: 'pure endosperm, no chalazal' |