| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G49610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G49610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G49610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49601 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-4 | 3011 | 1110 | 73.06% | 4121 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49601 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.2 x 10-7 | 264 | 56 | 82.50% | 320 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49601 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 2810 | 549 | 83.66% | 3359 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49601 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.9622 x 10-2 | 2249 | 1236 | 1121 | 2804 | 64.53% | 71.44% | 3485 | 3925 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.9e-10' Avg. expression score for this sample: '11743' Avg. expression score in LCM sample: '993.403' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G49601 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.7 x 10-12 | 2060 | 823 | 1019 | 2740 | 71.45% | 72.89% | 2883 | 3759 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.9e-10' Avg. expression score for this sample: '8083.78' Avg. expression score in LCM sample: '993.403' Tissue used: 'full endosperm' |
|||||
| AT3G49601 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.66555 x 10-1 | 1176 | 1211 | 376 | 458 | 49.27% | 54.92% | 2387 | 834 | TAIR8 |
Avg. embryo expression (dissected): '9619.46' Avg. embryo expression (LCM): '3213.28' |
||||
| AT3G49600 | UBP26 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.27243 x 10-1 | 14 | 20 | 3 | 5 | 41.18% | 62.50% | 34 | 8 | TAIR8 |
Avg. embryo expression (dissected): '57.8315' Avg. embryo expression (LCM): '61.3738' |
|||
| AT3G49600 | UBP26 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.0928 x 10-2 | 105 | 29 | 78.36% | 134 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49600 | UBP26 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.44576 x 10-1 | 18 | 16 | 5 | 18 | 52.94% | 78.26% | 34 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.732659' Avg. expression score for this sample: '83.6451' Avg. expression score in LCM sample: '95.6246' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G49600 | UBP26 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.83943 x 10-1 | 36 | 11 | 23 | 49 | 76.60% | 68.06% | 47 | 72 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.732659' Avg. expression score for this sample: '75.3539' Avg. expression score in LCM sample: '95.6246' Tissue used: 'full endosperm' |
||||
| AT3G49600 | UBP26 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.84869 x 10-1 | 63 | 32 | 66.32% | 95 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49600 | UBP26 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.57394 x 10-1 | 10 | 3 | 76.92% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49590 | ATG13 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.1 x 10-4 | 40 | 1 | 97.56% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49590 | ATG13 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-9 | 97 | 2 | 97.98% | 99 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49590 | ATG13 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.5193 x 10-2 | 59 | 20 | 22 | 71 | 74.68% | 76.34% | 79 | 93 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.218439' Avg. expression score for this sample: '174.453' Avg. expression score in LCM sample: '55.0878' Tissue used: 'full endosperm' |
||||
| AT3G49590 | ATG13 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.41197 x 10-1 | 18 | 10 | 3 | 4 | 64.29% | 57.14% | 28 | 7 | TAIR8 |
Avg. embryo expression (dissected): '105.65' Avg. embryo expression (LCM): '29.2238' |
|||
| AT3G49590 | ATG13 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.82363 x 10-1 | 12 | 12 | 8 | 20 | 50.00% | 71.43% | 24 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.218439' Avg. expression score for this sample: '120.696' Avg. expression score in LCM sample: '55.0878' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G49590 | ATG13 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.099 x 10-3 | 40 | 3 | 93.02% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49580 | LSU1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49580 | LSU1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '23.7234' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G49580 | LSU1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.34236' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT3G49580 | LSU1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49580 | LSU1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49580 | LSU1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.7145' Avg. embryo expression (LCM): '0' |
|||||
| AT3G49570 | LSU3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '126.914' Avg. embryo expression (LCM): '7.67329' |
||||
| AT3G49570 | LSU3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 3 | 0 | 1 | 40.00% | 100.00% | 5 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '510.525' Avg. expression score in LCM sample: '167.63' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G49570 | LSU3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 3 | 70.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49570 | LSU3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49570 | LSU3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.60248 x 10-1 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49570 | LSU3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 2 | 0 | 2 | 60.00% | 100.00% | 5 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '86.954' Avg. expression score in LCM sample: '167.63' Tissue used: 'full endosperm' |
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| AT3G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.81374 x 10-1 | 35 | 11 | 9 | 24 | 76.09% | 72.73% | 46 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.612288' Avg. expression score for this sample: '187.167' Avg. expression score in LCM sample: '69.8739' Tissue used: 'full endosperm' |
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| AT3G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.31938 x 10-1 | 19 | 3 | 86.36% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.71243 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.70223 x 10-1 | 13 | 24 | 3 | 2 | 35.14% | 40.00% | 37 | 5 | TAIR8 |
Avg. embryo expression (dissected): '278.969' Avg. embryo expression (LCM): '298.505' |
||||
| AT3G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.8042 x 10-2 | 29 | 4 | 87.88% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 22 | 9 | 14 | 20 | 70.97% | 58.82% | 31 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.612288' Avg. expression score for this sample: '165.749' Avg. expression score in LCM sample: '69.8739' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49551 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '47.9163' Avg. expression score in LCM sample: '35.2015' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49551 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49551 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49551 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49551 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 2 | 0 | 5 | 33.33% | 100.00% | 3 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '66.2803' Avg. expression score in LCM sample: '35.2015' Tissue used: 'full endosperm' |
|||||
| AT3G49551 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 2 | 0 | 0 | 50.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '50.8613' Avg. embryo expression (LCM): '22.5552' |
|||||
| AT3G49550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 10 | 1 | 4 | 44.44% | 80.00% | 18 | 5 | TAIR8 |
Avg. embryo expression (dissected): '44.8673' Avg. embryo expression (LCM): '39.6851' |
||||
| AT3G49550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.089 x 10-3 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.12282 x 10-1 | 9 | 5 | 9 | 10 | 64.29% | 52.63% | 14 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.752237' Avg. expression score for this sample: '30.9264' Avg. expression score in LCM sample: '9.95049' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.09497 x 10-1 | 29 | 8 | 6 | 16 | 78.38% | 72.73% | 37 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.752237' Avg. expression score for this sample: '54.7761' Avg. expression score in LCM sample: '9.95049' Tissue used: 'full endosperm' |
|||||
| AT3G49550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.71 x 10-4 | 32 | 1 | 96.97% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.23661 x 10-1 | 6 | 5 | 54.55% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.38707' Avg. expression score in LCM sample: '1.88133' Tissue used: 'full endosperm' |
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| AT3G49540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '13.2629' Avg. embryo expression (LCM): '3.20244' |
||||||
| AT3G49540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.85714 x 10-1 | 0 | 0 | 3 | 1 | 25.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '41.8733' Avg. expression score in LCM sample: '1.88133' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G49540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49530 | NAC062 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.1 x 10-8 | 102 | 8 | 92.73% | 110 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49530 | NAC062 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 222 | 113 | 127 | 258 | 66.27% | 67.01% | 335 | 385 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.069356' Avg. expression score for this sample: '998.701' Avg. expression score in LCM sample: '81.0149' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49530 | NAC062 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.965 x 10-3 | 225 | 87 | 80 | 245 | 72.12% | 75.38% | 312 | 325 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.069356' Avg. expression score for this sample: '1136.35' Avg. expression score in LCM sample: '81.0149' Tissue used: 'full endosperm' |
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| AT3G49530 | NAC062 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.9 x 10-8 | 141 | 17 | 89.24% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49530 | NAC062 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.12227 x 10-1 | 60 | 23 | 72.29% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49530 | NAC062 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.18934 x 10-1 | 76 | 70 | 25 | 22 | 52.05% | 46.81% | 146 | 47 | TAIR8 |
Avg. embryo expression (dissected): '510.633' Avg. embryo expression (LCM): '62.2277' |
|||
| AT3G49520 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.49394' Avg. embryo expression (LCM): '0' |
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| AT3G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.32647' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 38 | 1 | 97.44% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.28571 x 10-1 | 6 | 6 | 50.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.28356' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G49510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.1677 x 10-1 | 8 | 0 | 1 | 3 | 100.00% | 75.00% | 8 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.164734' Avg. expression score for this sample: '3.13134' Avg. expression score in LCM sample: '1.4404' Tissue used: 'full endosperm' |
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| AT3G49510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.025 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.142594' Avg. embryo expression (LCM): '0' |
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| AT3G49510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.4294 x 10-2 | 10 | 8 | 55.56% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.164734' Avg. expression score for this sample: '1.00953' Avg. expression score in LCM sample: '1.4404' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49500 | RDR6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.76471 x 10-1 | 4 | 0 | 1 | 4 | 100.00% | 80.00% | 4 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.19935' Avg. expression score for this sample: '31.1828' Avg. expression score in LCM sample: '23.3403' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49500 | RDR6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 1 | 90.91% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49500 | RDR6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49500 | RDR6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.47768 x 10-1 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49500 | RDR6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.38433 x 10-1 | 6 | 0 | 3 | 8 | 100.00% | 72.73% | 6 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.19935' Avg. expression score for this sample: '32.1692' Avg. expression score in LCM sample: '23.3403' Tissue used: 'full endosperm' |
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| AT3G49500 | RDR6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 6 | 5 | 0 | 1 | 54.55% | 100.00% | 11 | 1 | TAIR8 |
Avg. embryo expression (dissected): '48.8781' Avg. embryo expression (LCM): '34.6366' |
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| AT3G49490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.38262 x 10-1 | 19 | 17 | 8 | 3 | 52.78% | 27.27% | 36 | 11 | TAIR8 |
Avg. embryo expression (dissected): '70.5853' Avg. embryo expression (LCM): '49.9957' |
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| AT3G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.04847 x 10-1 | 240 | 75 | 76.19% | 315 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.99003 x 10-1 | 61 | 17 | 27 | 36 | 78.21% | 57.14% | 78 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.016281' Avg. expression score for this sample: '109.767' Avg. expression score in LCM sample: '98.9317' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.38 x 10-3 | 133 | 26 | 55 | 126 | 83.65% | 69.61% | 159 | 181 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.016281' Avg. expression score for this sample: '191.887' Avg. expression score in LCM sample: '98.9317' Tissue used: 'full endosperm' |
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| AT3G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.2 x 10-11 | 287 | 25 | 91.99% | 312 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.61403 x 10-1 | 15 | 10 | 60.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.64835 x 10-1 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G49480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 1 | 2 | 100.00% | 66.67% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.06805' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G49480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.9889' Avg. embryo expression (LCM): '0' |
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| AT3G49480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.38886' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G49470 | NACA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.34614 x 10-1 | 108 | 41 | 72.48% | 149 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G49470 | NACA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.27405 x 10-1 | 68 | 77 | 27 | 103 | 46.90% | 79.23% | 145 | 130 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.897921' Avg. expression score for this sample: '287.231' Avg. expression score in LCM sample: '39.7285' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G49470 | NACA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.93774 x 10-1 | 66 | 24 | 52 | 132 | 73.33% | 71.74% | 90 | 184 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.897921' Avg. expression score for this sample: '234.764' Avg. expression score in LCM sample: '39.7285' Tissue used: 'full endosperm' |
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| AT3G49470 | NACA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.75 x 10-4 | 119 | 26 | 82.07% | 145 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |