Displaying data sets 7301 - 7400 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G56740 HAG2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.26309 x 10-1 58 14 80.56% 72 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56740 HAG2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.43868 x 10-1 40 22 64.52% 62 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56730 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.92075 x 10-1 3 2 2 0 60.00% 0.00% 5 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '64.0105'
Avg. expression score in LCM sample: '50.5608'
Tissue used: 'pure endosperm, no chalazal'
AT5G56730 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.68054 x 10-1 12 6 1 9 66.67% 90.00% 18 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '82.5964'
Avg. expression score in LCM sample: '50.5608'
Tissue used: 'full endosperm'
AT5G56730 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 3 4 0 2 42.86% 100.00% 7 2 TAIR8 Avg. embryo expression (dissected): '106.825'
Avg. embryo expression (LCM): '97.8564'
AT5G56730 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.0543 x 10-1 8 1 88.89% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56730 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.8765 x 10-2 10 0 100.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56730 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.216 x 10-2 28 4 87.50% 32 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56720 c-NAD-MDH3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 4 2 0 0 66.67% 6 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.7747'
Avg. expression score in LCM sample: '2.88079'
Tissue used: 'pure endosperm, no chalazal'
AT5G56720 c-NAD-MDH3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 3 1 0 1 75.00% 100.00% 4 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '3.4868'
Avg. expression score in LCM sample: '2.88079'
Tissue used: 'full endosperm'
AT5G56720 c-NAD-MDH3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.66667 x 10-1 4 0 0 1 100.00% 100.00% 4 1 TAIR8 Avg. embryo expression (dissected): '3.29797'
Avg. embryo expression (LCM): '7.397'
AT5G56720 c-NAD-MDH3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56720 c-NAD-MDH3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56720 c-NAD-MDH3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 3 1 75.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56710 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3218.87'
Avg. expression score in LCM sample: '1152.92'
Tissue used: 'pure endosperm, no chalazal'
AT5G56710 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '2610.02'
Avg. expression score in LCM sample: '1152.92'
Tissue used: 'full endosperm'
AT5G56710 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '6034.68'
Avg. embryo expression (LCM): '9153.38'
AT5G56710 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56710 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56710 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 4 0 3 1 100.00% 25.00% 4 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.685082'
Avg. expression score for this sample: '7.55845'
Avg. expression score in LCM sample: '13.9189'
Tissue used: 'pure endosperm, no chalazal'
AT5G56700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.1 6 0 0 2 100.00% 100.00% 6 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.685082'
Avg. expression score for this sample: '9.38859'
Avg. expression score in LCM sample: '13.9189'
Tissue used: 'full endosperm'
AT5G56700 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '4.31524'
Avg. embryo expression (LCM): '6.49278'
AT5G56700 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56700 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.54799 x 10-1 1 2 33.33% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56700 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56690 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.4'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G56690 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.4 0 3 0 0 0.00% 3 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.4'
Avg. expression score for this sample: '.900138'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G56690 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G56690 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56690 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56690 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.1 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56680 SYNC1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 12 8 1 10 60.00% 90.91% 20 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.234836'
Avg. expression score for this sample: '548.587'
Avg. expression score in LCM sample: '323.207'
Tissue used: 'pure endosperm, no chalazal'
AT5G56680 SYNC1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.52108 x 10-1 10 3 2 15 76.92% 88.24% 13 17 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.234836'
Avg. expression score for this sample: '515.151'
Avg. expression score in LCM sample: '323.207'
Tissue used: 'full endosperm'
AT5G56680 SYNC1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.69445 x 10-1 35 24 11 4 59.32% 26.67% 59 15 TAIR8 Avg. embryo expression (dissected): '1753.54'
Avg. embryo expression (LCM): '1550.14'
AT5G56680 SYNC1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.5169 x 10-1 1 2 33.33% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56680 SYNC1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.20396 x 10-1 38 10 79.17% 48 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56680 SYNC1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 9.8199 x 10-2 32 3 91.43% 35 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56670 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '81.4399'
Avg. expression score in LCM sample: '22.0322'
Tissue used: 'pure endosperm, no chalazal'
AT5G56670 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '106.132'
Avg. expression score in LCM sample: '22.0322'
Tissue used: 'full endosperm'
AT5G56670 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '202.157'
Avg. embryo expression (LCM): '583.559'
AT5G56670 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56670 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56670 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56660 ILL2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.5136 x 10-2 38 18 15 69 67.86% 82.14% 56 84 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1.0e-24'
Avg. expression score for this sample: '47.2708'
Avg. expression score in LCM sample: '70.2854'
Tissue used: 'pure endosperm, no chalazal'
AT5G56660 ILL2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.4 x 10-27 143 39 11 401 78.57% 97.33% 182 412 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1.0e-24'
Avg. expression score for this sample: '143.009'
Avg. expression score in LCM sample: '70.2854'
Tissue used: 'full endosperm'
AT5G56660 ILL2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.86499 x 10-1 22 50 7 30 30.56% 81.08% 72 37 TAIR8 Avg. embryo expression (dissected): '56.7014'
Avg. embryo expression (LCM): '80.8521'
AT5G56660 ILL2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.95 x 10-4 156 4 97.50% 160 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56660 ILL2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.5 x 10-15 726 12 98.37% 738 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56660 ILL2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.6882 x 10-2 442 34 92.86% 476 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56650 ILL1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.576471'
Avg. expression score for this sample: '121.49'
Avg. expression score in LCM sample: '181.666'
Tissue used: 'pure endosperm, no chalazal'
AT5G56650 ILL1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.76471 x 10-1 3 0 1 5 100.00% 83.33% 3 6 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.576471'
Avg. expression score for this sample: '269.69'
Avg. expression score in LCM sample: '181.666'
Tissue used: 'full endosperm'
AT5G56650 ILL1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '131.989'
Avg. embryo expression (LCM): '74.4724'
AT5G56650 ILL1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56650 ILL1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.09091 x 10-1 13 0 100.00% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56650 ILL1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56640 MIOX5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 10 5 8 14 66.67% 63.64% 15 22 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.449876'
Avg. expression score for this sample: '245.478'
Avg. expression score in LCM sample: '164.455'
Tissue used: 'pure endosperm, no chalazal'
AT5G56640 MIOX5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.04002 x 10-1 33 14 15 49 70.21% 76.56% 47 64 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.449876'
Avg. expression score for this sample: '161.661'
Avg. expression score in LCM sample: '164.455'
Tissue used: 'full endosperm'
AT5G56640 MIOX5 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Avg. embryo expression (dissected): '11.0427'
Avg. embryo expression (LCM): '0'
AT5G56640 MIOX5 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.39 x 10-4 4 11 26.67% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56640 MIOX5 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.60492 x 10-1 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56640 MIOX5 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.88591 x 10-1 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56630 PFK7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.58285 x 10-1 32 10 12 18 76.19% 60.00% 42 30 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.515235'
Avg. expression score for this sample: '126.974'
Avg. expression score in LCM sample: '61.011'
Tissue used: 'pure endosperm, no chalazal'
AT5G56630 PFK7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.68928 x 10-1 16 3 15 31 84.21% 67.39% 19 46 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.515235'
Avg. expression score for this sample: '83.1565'
Avg. expression score in LCM sample: '61.011'
Tissue used: 'full endosperm'
AT5G56630 PFK7 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 19 18 3 2 51.35% 40.00% 37 5 TAIR8 Avg. embryo expression (dissected): '131.029'
Avg. embryo expression (LCM): '99.4011'
AT5G56630 PFK7 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 4 1 80.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56630 PFK7 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.2 x 10-7 67 1 98.53% 68 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56630 PFK7 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 7.4 x 10-12 107 0 100.00% 107 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56620 NAC099 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.9485 x 10-2 21 16 23 22 56.76% 48.89% 37 45 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.745373'
Avg. expression score for this sample: '61.7154'
Avg. expression score in LCM sample: '26.7061'
Tissue used: 'pure endosperm, no chalazal'
AT5G56620 NAC099 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.95945 x 10-1 39 12 16 40 76.47% 71.43% 51 56 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.745373'
Avg. expression score for this sample: '72.0977'
Avg. expression score in LCM sample: '26.7061'
Tissue used: 'full endosperm'
AT5G56620 NAC099 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 4 3 1 0 57.14% 0.00% 7 1 TAIR8 Avg. embryo expression (dissected): '4.94565'
Avg. embryo expression (LCM): '0'
AT5G56620 NAC099 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.52864 x 10-1 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56620 NAC099 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56620 NAC099 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56610 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.32391 x 10-1 11 0 2 9 100.00% 81.82% 11 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.366'
Avg. expression score for this sample: '8.81141'
Avg. expression score in LCM sample: '6.46708'
Tissue used: 'pure endosperm, no chalazal'
AT5G56610 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 3 6 16 40.00% 72.73% 5 22 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.366'
Avg. expression score for this sample: '12.4853'
Avg. expression score in LCM sample: '6.46708'
Tissue used: 'full endosperm'
AT5G56610 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.08392 x 10-1 2 5 1 0 28.57% 0.00% 7 1 TAIR8 Avg. embryo expression (dissected): '3.68937'
Avg. embryo expression (LCM): '6.89466'
AT5G56610 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56610 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 6 1 85.71% 7 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56610 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.4018 x 10-2 15 0 100.00% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56600 PRF3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 1 1 50.00% 0 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '259.932'
Avg. expression score in LCM sample: '41.9332'
Tissue used: 'pure endosperm, no chalazal'
AT5G56600 PRF3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '260.005'
Avg. expression score in LCM sample: '41.9332'
Tissue used: 'full endosperm'
AT5G56600 PRF3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '228.784'
Avg. embryo expression (LCM): '259.774'
AT5G56600 PRF3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56600 PRF3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56600 PRF3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56590 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.58272 x 10-1 20 14 11 24 58.82% 68.57% 34 35 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.096416'
Avg. expression score for this sample: '35.8873'
Avg. expression score in LCM sample: '43.888'
Tissue used: 'pure endosperm, no chalazal'
AT5G56590 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.752 x 10-3 43 6 5 23 87.76% 82.14% 49 28 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.096416'
Avg. expression score for this sample: '50.7126'
Avg. expression score in LCM sample: '43.888'
Tissue used: 'full endosperm'
AT5G56590 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.42055 x 10-1 34 43 19 13 44.16% 40.62% 77 32 TAIR8 Avg. embryo expression (dissected): '112.795'
Avg. embryo expression (LCM): '68.8587'
AT5G56590 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.9641 x 10-2 7 8 46.67% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56590 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.7655 x 10-2 1 4 20.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56590 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.99509 x 10-1 8 6 57.14% 14 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56580 MKK6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.71512 x 10-1 188 149 106 334 55.79% 75.91% 337 440 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.544749'
Avg. expression score for this sample: '162.977'
Avg. expression score in LCM sample: '119.582'
Tissue used: 'pure endosperm, no chalazal'
AT5G56580 MKK6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.53281 x 10-1 307 225 243 678 57.71% 73.62% 532 921 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.544749'
Avg. expression score for this sample: '205.068'
Avg. expression score in LCM sample: '119.582'
Tissue used: 'full endosperm'
AT5G56580 MKK6 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.06244 x 10-1 127 148 33 43 46.18% 56.58% 275 76 TAIR8 Avg. embryo expression (dissected): '119.208'
Avg. embryo expression (LCM): '109.121'
AT5G56580 MKK6 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 9.691 x 10-3 104 29 78.20% 133 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56580 MKK6 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.23936 x 10-1 255 105 70.83% 360 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56580 MKK6 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.34424 x 10-1 180 83 68.44% 263 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G56570 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 0 0 2 100.00% 100.00% 2 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.90496'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G56570 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 5 5 1 3 50.00% 75.00% 10 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '10.7564'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'