| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G53540 | TRM19 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.01658 x 10-1 | 29 | 26 | 17 | 69 | 52.73% | 80.23% | 55 | 86 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.671183' Avg. expression score for this sample: '234.79' Avg. expression score in LCM sample: '106.619' Tissue used: 'full endosperm' |
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| AT3G53540 | TRM19 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.375 x 10-3 | 79 | 13 | 85.87% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53540 | TRM19 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.752 x 10-2 | 15 | 32 | 10 | 5 | 31.91% | 33.33% | 47 | 15 | TAIR8 |
Avg. embryo expression (dissected): '298.817' Avg. embryo expression (LCM): '205.936' |
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| AT3G53540 | TRM19 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-5 | 163 | 24 | 87.17% | 187 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53540 | TRM19 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 21 | 14 | 6 | 21 | 60.00% | 77.78% | 35 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.671183' Avg. expression score for this sample: '235.344' Avg. expression score in LCM sample: '106.619' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53540 | TRM19 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.9935 x 10-2 | 32 | 5 | 86.49% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53530 | NAKR3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53530 | NAKR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '109.529' Avg. expression score in LCM sample: '39.4933' Tissue used: 'full endosperm' |
||||||
| AT3G53530 | NAKR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '84.4575' Avg. expression score in LCM sample: '39.4933' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53530 | NAKR3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53530 | NAKR3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53530 | NAKR3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '60.7315' Avg. embryo expression (LCM): '68.7331' |
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| AT3G53520 | UXS1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '61.2545' Avg. embryo expression (LCM): '64.8902' |
|||||
| AT3G53520 | UXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53520 | UXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '91.2157' Avg. expression score in LCM sample: '84.5865' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53520 | UXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53520 | UXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53520 | UXS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '206.307' Avg. expression score in LCM sample: '84.5865' Tissue used: 'full endosperm' |
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| AT3G53510 | ABCG20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.1 x 10-24 | 48 | 0 | 1 | 171 | 100.00% | 99.42% | 48 | 172 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.0e-22' Avg. expression score for this sample: '573.197' Avg. expression score in LCM sample: '15.5063' Tissue used: 'full endosperm' |
||||
| AT3G53510 | ABCG20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.5009 x 10-2 | 22 | 2 | 91.67% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53510 | ABCG20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 1 | 2 | 0.00% | 66.67% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.0e-22' Avg. expression score for this sample: '35.2594' Avg. expression score in LCM sample: '15.5063' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G53510 | ABCG20 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '14.2516' Avg. embryo expression (LCM): '16.1001' |
|||||
| AT3G53510 | ABCG20 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 24 | 0 | 100.00% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53510 | ABCG20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.16583 x 10-1 | 13 | 1 | 92.86% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53500 | RS2Z32 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.27007 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53500 | RS2Z32 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.85567 x 10-1 | 29 | 11 | 23 | 58 | 72.50% | 71.60% | 40 | 81 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.701053' Avg. expression score for this sample: '881.364' Avg. expression score in LCM sample: '495.04' Tissue used: 'full endosperm' |
||||
| AT3G53500 | RS2Z32 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8431 x 10-2 | 29 | 5 | 85.29% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53500 | RS2Z32 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.6806 x 10-1 | 36 | 43 | 6 | 7 | 45.57% | 53.85% | 79 | 13 | TAIR8 |
Avg. embryo expression (dissected): '1906.4' Avg. embryo expression (LCM): '1195.55' |
|||
| AT3G53500 | RS2Z32 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 18 | 10 | 64.29% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53500 | RS2Z32 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.83236 x 10-1 | 27 | 35 | 16 | 42 | 43.55% | 72.41% | 62 | 58 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.701053' Avg. expression score for this sample: '1551.36' Avg. expression score in LCM sample: '495.04' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.4472 x 10-1 | 5 | 1 | 1 | 6 | 83.33% | 85.71% | 6 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.621855' Avg. expression score for this sample: '33.5562' Avg. expression score in LCM sample: '11.2145' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G53490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.41728 x 10-1 | 20 | 3 | 86.96% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9488 x 10-2 | 28 | 1 | 96.55% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28571 x 10-1 | 0 | 2 | 2 | 0 | 0.00% | 0.00% | 2 | 2 | TAIR8 |
Avg. embryo expression (dissected): '12.6886' Avg. embryo expression (LCM): '20.5458' |
||||
| AT3G53490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 13 | 0 | 8 | 6 | 100.00% | 42.86% | 13 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.621855' Avg. expression score for this sample: '44.0892' Avg. expression score in LCM sample: '11.2145' Tissue used: 'full endosperm' |
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| AT3G53480 | ABCG37 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 0 | 3 | 2 | 100.00% | 40.00% | 5 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.472548' Avg. expression score for this sample: '73.3423' Avg. expression score in LCM sample: '33.3349' Tissue used: 'full endosperm' |
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| AT3G53480 | ABCG37 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '9.43563' Avg. embryo expression (LCM): '4.14433' |
|||||
| AT3G53480 | ABCG37 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53480 | ABCG37 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.42424 x 10-1 | 1 | 5 | 0 | 0 | 16.67% | 6 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.472548' Avg. expression score for this sample: '61.5498' Avg. expression score in LCM sample: '33.3349' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53480 | ABCG37 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53480 | ABCG37 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G53470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 1 | 2 | 50.00% | 66.67% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '77.1837' Avg. expression score in LCM sample: '27.7791' Tissue used: 'full endosperm' |
|||||
| AT3G53470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.64286 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '62.2896' Avg. expression score in LCM sample: '27.7791' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Avg. embryo expression (dissected): '97.1646' Avg. embryo expression (LCM): '56.5889' |
|||||
| AT3G53470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53460 | CP29 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.77827 x 10-1 | 301 | 150 | 66.74% | 451 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53460 | CP29 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.3 x 10-4 | 5650 | 4601 | 1650 | 1198 | 55.12% | 42.06% | 10251 | 2848 | TAIR8 |
Avg. embryo expression (dissected): '18889.4' Avg. embryo expression (LCM): '9322.48' |
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| AT3G53460 | CP29 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.79083 x 10-1 | 219 | 120 | 64.60% | 339 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53460 | CP29 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.81342 x 10-1 | 1605 | 658 | 559 | 808 | 70.92% | 59.11% | 2263 | 1367 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.315767' Avg. expression score for this sample: '3491.24' Avg. expression score in LCM sample: '1238.33' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53460 | CP29 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.74 x 10-4 | 108 | 97 | 52.68% | 205 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53460 | CP29 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.4525 x 10-2 | 310 | 175 | 219 | 360 | 63.92% | 62.18% | 485 | 579 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.315767' Avg. expression score for this sample: '1064.18' Avg. expression score in LCM sample: '1238.33' Tissue used: 'full endosperm' |
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| AT3G53450 | LOG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.25781' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G53450 | LOG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3.23208' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53450 | LOG4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53450 | LOG4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53450 | LOG4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '27.4658' Avg. embryo expression (LCM): '37.2236' |
|||||
| AT3G53450 | LOG4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G53440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.30769 x 10-1 | 2 | 0 | 0 | 5 | 100.00% | 100.00% | 2 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.635117' Avg. expression score for this sample: '146.278' Avg. expression score in LCM sample: '23.2668' Tissue used: 'full endosperm' |
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| AT3G53440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '169.96' Avg. embryo expression (LCM): '149.083' |
|||||
| AT3G53440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.80786 x 10-1 | 15 | 6 | 71.43% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 2 | 50.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.635117' Avg. expression score for this sample: '93.4038' Avg. expression score in LCM sample: '23.2668' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G53440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.70626 x 10-1 | 12 | 6 | 66.67% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.64286 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.4' Avg. expression score for this sample: '1333.26' Avg. expression score in LCM sample: '763.086' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 2 | 2 | 0 | 66.67% | 0.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '3223.31' Avg. embryo expression (LCM): '5045.91' |
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| AT3G53430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.42857 x 10-1 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.4 | 0 | 0 | 3 | 0 | 0.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.4' Avg. expression score for this sample: '1887.68' Avg. expression score in LCM sample: '763.086' Tissue used: 'full endosperm' |
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| AT3G53420 | PIP2A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.9 x 10-15 | 270 | 29 | 60 | 256 | 90.30% | 81.01% | 299 | 316 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.1e-11' Avg. expression score for this sample: '120.35' Avg. expression score in LCM sample: '39.6991' Tissue used: 'full endosperm' |
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| AT3G53420 | PIP2A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 731 | 6 | 99.19% | 737 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53420 | PIP2A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.48416 x 10-1 | 34 | 46 | 24 | 13 | 42.50% | 35.14% | 80 | 37 | TAIR8 |
Avg. embryo expression (dissected): '52.9575' Avg. embryo expression (LCM): '18.3355' |
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| AT3G53420 | PIP2A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-13 | 135 | 0 | 100.00% | 135 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53420 | PIP2A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.44301 x 10-1 | 211 | 45 | 84 | 99 | 82.42% | 54.10% | 256 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.1e-11' Avg. expression score for this sample: '119.477' Avg. expression score in LCM sample: '39.6991' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53420 | PIP2A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.89 x 10-4 | 113 | 56 | 66.86% | 169 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G53410 | LUL2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT3G53410 | LUL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 5.96 x 10-3 | 35 | 6 | 8 | 42 | 85.37% | 84.00% | 41 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000381' Avg. expression score for this sample: '225.479' Avg. expression score in LCM sample: '65.053' Tissue used: 'full endosperm' |
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| AT3G53410 | LUL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 4.0291 x 10-2 | 9 | 2 | 0 | 17 | 81.82% | 100.00% | 11 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000381' Avg. expression score for this sample: '173.052' Avg. expression score in LCM sample: '65.053' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53410 | LUL2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.69594 x 10-1 | 25 | 7 | 78.12% | 32 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT3G53410 | LUL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.1228 x 10-2 | 64 | 2 | 96.97% | 66 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT3G53410 | LUL2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 3 | 1 | 3 | 25.00% | 75.00% | 4 | 4 | TAIR8 |
Avg. embryo expression (dissected): '90.2432' Avg. embryo expression (LCM): '40.6144' |
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| AT3G53402 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.45455 x 10-1 | 5 | 0 | 1 | 0 | 100.00% | 0.00% | 5 | 1 | TAIR8 |
Avg. embryo expression (dissected): '38.3218' Avg. embryo expression (LCM): '26.6116' |
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| AT3G53402 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6044 x 10-2 | 41 | 3 | 93.18% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53402 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 0 | 7 | 6 | 100.00% | 46.15% | 10 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.242431' Avg. expression score for this sample: '75.1477' Avg. expression score in LCM sample: '13.7572' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53402 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.02284 x 10-1 | 13 | 7 | 65.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53402 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.9918 x 10-2 | 1 | 4 | 20.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53402 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.31038 x 10-1 | 34 | 12 | 2 | 14 | 73.91% | 87.50% | 46 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.242431' Avg. expression score for this sample: '109.63' Avg. expression score in LCM sample: '13.7572' Tissue used: 'full endosperm' |
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| AT3G53400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 12 | 5 | 7 | 8 | 70.59% | 53.33% | 17 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.830238' Avg. expression score for this sample: '108.319' Avg. expression score in LCM sample: '17.3876' Tissue used: 'full endosperm' |
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| AT3G53400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 3 | 66.67% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 2 | 4 | 3 | 75.00% | 42.86% | 8 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.830238' Avg. expression score for this sample: '71.8056' Avg. expression score in LCM sample: '17.3876' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G53400 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.2381 x 10-1 | 4 | 0 | 1 | 0 | 100.00% | 0.00% | 4 | 1 | TAIR8 |
Avg. embryo expression (dissected): '48.2721' Avg. embryo expression (LCM): '20.4202' |
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| AT3G53400 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.43 x 10-4 | 29 | 1 | 96.67% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.56122 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.36509 x 10-1 | 9 | 3 | 75.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.72077 x 10-1 | 19 | 21 | 17 | 48 | 47.50% | 73.85% | 40 | 65 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.602361' Avg. expression score for this sample: '241.307' Avg. expression score in LCM sample: '115.437' Tissue used: 'full endosperm' |
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| AT3G53390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.51 x 10-4 | 42 | 4 | 91.30% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G53390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 9 | 0 | 2 | 47.06% | 100.00% | 17 | 2 | TAIR8 |
Avg. embryo expression (dissected): '215.378' Avg. embryo expression (LCM): '92.4688' |