| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G55120 | TT5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.4319 x 10-1 | 33 | 28 | 17 | 5 | 54.10% | 22.73% | 61 | 22 | TAIR8 |
Avg. embryo expression (dissected): '120.169' Avg. embryo expression (LCM): '107.137' |
|||
| AT3G55120 | TT5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.86 x 10-4 | 96 | 3 | 96.97% | 99 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55120 | TT5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.44 x 10-3 | 43 | 6 | 24 | 90 | 87.76% | 78.95% | 49 | 114 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000306' Avg. expression score for this sample: '77.1844' Avg. expression score in LCM sample: '1.58737' Tissue used: 'full endosperm' |
||||
| AT3G55120 | TT5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.7175 x 10-2 | 22 | 3 | 1 | 8 | 88.00% | 88.89% | 25 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000306' Avg. expression score for this sample: '26.7022' Avg. expression score in LCM sample: '1.58737' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G55110 | ABCG18 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.714015' Avg. expression score in LCM sample: '1.16114' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55110 | ABCG18 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55110 | ABCG18 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55110 | ABCG18 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.3261' Avg. expression score in LCM sample: '1.16114' Tissue used: 'full endosperm' |
|||||
| AT3G55110 | ABCG18 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 7 | 2 | 0 | 53.33% | 0.00% | 15 | 2 | TAIR8 |
Avg. embryo expression (dissected): '18.0119' Avg. embryo expression (LCM): '22.3291' |
|||
| AT3G55110 | ABCG18 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55100 | ABCG17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55100 | ABCG17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.516083' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT3G55100 | ABCG17 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.424861' Avg. embryo expression (LCM): '0' |
|||||
| AT3G55100 | ABCG17 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G55100 | ABCG17 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55100 | ABCG17 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55090 | ABCG16 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55090 | ABCG16 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55090 | ABCG16 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.47245' Avg. embryo expression (LCM): '.565136' |
||||
| AT3G55090 | ABCG16 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55090 | ABCG16 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.8 x 10-6 | 1 | 0 | 1 | 59 | 100.00% | 98.33% | 1 | 60 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000012' Avg. expression score for this sample: '16.6053' Avg. expression score in LCM sample: '3.98313' Tissue used: 'full endosperm' |
||||
| AT3G55090 | ABCG16 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000012' Avg. expression score for this sample: '1.1695' Avg. expression score in LCM sample: '3.98313' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 4 | 2 | 4 | 50.00% | 66.67% | 8 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.25565' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55080 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.35117 x 10-1 | 6 | 0 | 2 | 3 | 100.00% | 60.00% | 6 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.75714' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT3G55080 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.02478 x 10-1 | 14 | 17 | 1 | 0 | 45.16% | 0.00% | 31 | 1 | TAIR8 |
Avg. embryo expression (dissected): '14.1738' Avg. embryo expression (LCM): '15.6857' |
||||
| AT3G55080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '52.3117' Avg. expression score in LCM sample: '21.2091' Tissue used: 'full endosperm' |
|||||||
| AT3G55070 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '26.6106' Avg. embryo expression (LCM): '31.5095' |
||||||
| AT3G55070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '37.8196' Avg. expression score in LCM sample: '21.2091' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G55070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55070 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55060 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0109 x 10-2 | 91 | 30 | 75.21% | 121 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.00106 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55060 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.47175 x 10-1 | 17 | 28 | 6 | 6 | 37.78% | 50.00% | 45 | 12 | TAIR8 |
Avg. embryo expression (dissected): '175.796' Avg. embryo expression (LCM): '209.238' |
||||
| AT3G55060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.16635 x 10-1 | 115 | 52 | 68.86% | 167 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.03776 x 10-1 | 23 | 11 | 36 | 58 | 67.65% | 61.70% | 34 | 94 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.417393' Avg. expression score for this sample: '264.868' Avg. expression score in LCM sample: '452.24' Tissue used: 'full endosperm' |
|||||
| AT3G55060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.34585 x 10-1 | 35 | 30 | 23 | 54 | 53.85% | 70.13% | 65 | 77 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.417393' Avg. expression score for this sample: '376.825' Avg. expression score in LCM sample: '452.24' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '403.388' Avg. expression score in LCM sample: '192.881' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G55050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55050 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '616.627' Avg. expression score in LCM sample: '192.881' Tissue used: 'full endosperm' |
|||||||
| AT3G55050 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '472.672' Avg. embryo expression (LCM): '157.937' |
||||||
| AT3G55050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55040 | GSTL2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55040 | GSTL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '29.0201' Avg. expression score in LCM sample: '18.8574' Tissue used: 'full endosperm' |
||||||
| AT3G55040 | GSTL2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '63.0202' Avg. embryo expression (LCM): '72.5258' |
|||||
| AT3G55040 | GSTL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '27.4319' Avg. expression score in LCM sample: '18.8574' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G55040 | GSTL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55040 | GSTL2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55030 | PGPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.89692 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55030 | PGPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.83137 x 10-1 | 23 | 6 | 79.31% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55030 | PGPS2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 4 | 1 | 1 | 33.33% | 50.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '43.1766' Avg. embryo expression (LCM): '28.7089' |
|||
| AT3G55030 | PGPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.53699 x 10-1 | 21 | 4 | 84.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55030 | PGPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 8 | 3 | 4 | 10 | 72.73% | 71.43% | 11 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '37.9355' Avg. expression score in LCM sample: '43.1972' Tissue used: 'full endosperm' |
||||
| AT3G55030 | PGPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.10382 x 10-1 | 4 | 0 | 7 | 4 | 100.00% | 36.36% | 4 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '37.1271' Avg. expression score in LCM sample: '43.1972' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G55020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.84453 x 10-1 | 1068 | 520 | 497 | 1047 | 67.25% | 67.81% | 1588 | 1544 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.2e-06' Avg. expression score for this sample: '321.107' Avg. expression score in LCM sample: '136.264' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1008 | 133 | 88.34% | 1141 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.556 x 10-3 | 224 | 63 | 78.05% | 287 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.6 x 10-10 | 833 | 374 | 317 | 1168 | 69.01% | 78.65% | 1207 | 1485 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.2e-06' Avg. expression score for this sample: '194.255' Avg. expression score in LCM sample: '136.264' Tissue used: 'full endosperm' |
|||||
| AT3G55020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.20503 x 10-1 | 546 | 555 | 181 | 259 | 49.59% | 58.86% | 1101 | 440 | TAIR8 |
Avg. embryo expression (dissected): '245.612' Avg. embryo expression (LCM): '119.018' |
||||
| AT3G55020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 972 | 69 | 93.37% | 1041 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55010 | PUR5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0455 x 10-2 | 22 | 38 | 36.67% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55010 | PUR5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.0057 x 10-2 | 52 | 5 | 46 | 11 | 91.23% | 19.30% | 57 | 57 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.065756' Avg. expression score for this sample: '134.897' Avg. expression score in LCM sample: '63.0541' Tissue used: 'full endosperm' |
||||
| AT3G55010 | PUR5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.511 x 10-3 | 91 | 34 | 13 | 4 | 72.80% | 23.53% | 125 | 17 | TAIR8 |
Avg. embryo expression (dissected): '746.166' Avg. embryo expression (LCM): '775.228' |
|||
| AT3G55010 | PUR5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.17323 x 10-1 | 20 | 4 | 15 | 7 | 83.33% | 31.82% | 24 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.065756' Avg. expression score for this sample: '225.062' Avg. expression score in LCM sample: '63.0541' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G55010 | PUR5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.4495 x 10-1 | 2 | 5 | 28.57% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55010 | PUR5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-18 | 159 | 7 | 95.78% | 166 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55005 | TON1B | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.1 x 10-7 | 47 | 1 | 97.92% | 48 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55005 | TON1B | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.88704 x 10-1 | 12 | 4 | 75.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55005 | TON1B | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.15649 x 10-1 | 31 | 29 | 4 | 12 | 51.67% | 75.00% | 60 | 16 | TAIR8 |
Avg. embryo expression (dissected): '108.965' Avg. embryo expression (LCM): '76.6199' |
|||
| AT3G55005 | TON1B | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.06 x 10-4 | 33 | 3 | 91.67% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55005 | TON1B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.02361 x 10-1 | 31 | 23 | 25 | 50 | 57.41% | 66.67% | 54 | 75 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.849016' Avg. expression score for this sample: '139.648' Avg. expression score in LCM sample: '64.9795' Tissue used: 'full endosperm' |
||||
| AT3G55005 | TON1B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.89041 x 10-1 | 36 | 17 | 20 | 44 | 67.92% | 68.75% | 53 | 64 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.849016' Avg. expression score for this sample: '105.733' Avg. expression score in LCM sample: '64.9795' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G55000 | TON1A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.47617 x 10-1 | 131 | 55 | 69 | 138 | 70.43% | 66.67% | 186 | 207 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001888' Avg. expression score for this sample: '278.679' Avg. expression score in LCM sample: '114.511' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G55000 | TON1A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.14157 x 10-1 | 91 | 24 | 79.13% | 115 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55000 | TON1A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.59 x 10-4 | 274 | 55 | 83.28% | 329 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55000 | TON1A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.74 x 10-4 | 203 | 40 | 72 | 182 | 83.54% | 71.65% | 243 | 254 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001888' Avg. expression score for this sample: '413.164' Avg. expression score in LCM sample: '114.511' Tissue used: 'full endosperm' |
||||
| AT3G55000 | TON1A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 170 | 152 | 39 | 23 | 52.80% | 37.10% | 322 | 62 | TAIR8 |
Avg. embryo expression (dissected): '434.234' Avg. embryo expression (LCM): '490.375' |
|||
| AT3G55000 | TON1A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0361 | 235 | 60 | 79.66% | 295 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G54990 | SMZ | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.85057 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G54990 | SMZ | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.53647 x 10-1 | 6 | 5 | 9 | 5 | 54.55% | 35.71% | 11 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.277213' Avg. expression score for this sample: '12.118' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT3G54990 | SMZ | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.40461' Avg. embryo expression (LCM): '0' |
||||
| AT3G54990 | SMZ | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.277213' Avg. expression score for this sample: '1.49186' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G54990 | SMZ | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G54990 | SMZ | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.32258 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G54980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.3344 x 10-2 | 0 | 4 | 0.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G54980 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.89056 x 10-1 | 5 | 5 | 50.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G54980 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 2 | 1 | 0 | 66.67% | 0.00% | 6 | 1 | TAIR8 |
Avg. embryo expression (dissected): '96.0267' Avg. embryo expression (LCM): '90.8111' |
||||
| AT3G54980 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G54980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 1 | 3 | 4 | 83.33% | 57.14% | 6 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '63.225' Avg. expression score in LCM sample: '36.2892' Tissue used: 'full endosperm' |
|||||
| AT3G54980 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 1 | 0 | 50.00% | 0.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '43.5622' Avg. expression score in LCM sample: '36.2892' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G54970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '27.3822' Avg. expression score in LCM sample: '9.45076' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G54970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.07115 x 10-1 | 18 | 3 | 85.71% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G54970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.36749 x 10-1 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G54970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 8 | 6 | 3 | 8 | 57.14% | 72.73% | 14 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '53.3631' Avg. expression score in LCM sample: '9.45076' Tissue used: 'full endosperm' |
|||||
| AT3G54970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '80.7075' Avg. embryo expression (LCM): '75.7157' |
|||||
| AT3G54970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.54548 x 10-1 | 18 | 5 | 78.26% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |