| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G55440 | TPI | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55440 | TPI | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55440 | TPI | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '795.8' Avg. expression score in LCM sample: '394.286' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55440 | TPI | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55440 | TPI | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1126.92' Avg. embryo expression (LCM): '726.187' |
|||||
| AT3G55440 | TPI | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '546.821' Avg. expression score in LCM sample: '394.286' Tissue used: 'full endosperm' |
|||||
| AT3G55430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3 x 10-5 | 276 | 111 | 164 | 553 | 71.32% | 77.13% | 387 | 717 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000315' Avg. expression score for this sample: '637.269' Avg. expression score in LCM sample: '80.7356' Tissue used: 'full endosperm' |
|||||
| AT3G55430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.13 x 10-4 | 67 | 6 | 91.78% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55430 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.46838 x 10-1 | 69 | 22 | 75.82% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55430 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.31297 x 10-1 | 105 | 116 | 20 | 28 | 47.51% | 58.33% | 221 | 48 | TAIR8 |
Avg. embryo expression (dissected): '681.83' Avg. embryo expression (LCM): '115.916' |
||||
| AT3G55430 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-12 | 179 | 12 | 93.72% | 191 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55430 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.97122 x 10-1 | 167 | 86 | 91 | 197 | 66.01% | 68.40% | 253 | 288 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000315' Avg. expression score for this sample: '938.816' Avg. expression score in LCM sample: '80.7356' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54545 x 10-1 | 4 | 0 | 0 | 2 | 100.00% | 100.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.038452' Avg. expression score for this sample: '2.70183' Avg. expression score in LCM sample: '1.3963' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55420 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.11711 x 10-1 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55420 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.40071 x 10-1 | 8 | 3 | 1 | 2 | 72.73% | 66.67% | 11 | 3 | TAIR8 |
Avg. embryo expression (dissected): '6.27441' Avg. embryo expression (LCM): '0' |
||||
| AT3G55420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.27386 x 10-1 | 12 | 1 | 1 | 6 | 92.31% | 85.71% | 13 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.038452' Avg. expression score for this sample: '7.38461' Avg. expression score in LCM sample: '1.3963' Tissue used: 'full endosperm' |
|||||
| AT3G55420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55420 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.5405 x 10-2 | 372 | 128 | 74.40% | 500 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55410 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.89299 x 10-1 | 20 | 3 | 86.96% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55410 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.64994 x 10-1 | 30 | 46 | 7 | 11 | 39.47% | 61.11% | 76 | 18 | TAIR8 |
Avg. embryo expression (dissected): '250.15' Avg. embryo expression (LCM): '298.743' |
||||
| AT3G55410 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.61 x 10-4 | 543 | 73 | 88.15% | 616 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.33 x 10-4 | 52 | 28 | 24 | 160 | 65.00% | 86.96% | 80 | 184 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000232' Avg. expression score for this sample: '165.927' Avg. expression score in LCM sample: '200.333' Tissue used: 'full endosperm' |
|||||
| AT3G55410 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.94402 x 10-1 | 24 | 11 | 5 | 30 | 68.57% | 85.71% | 35 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000232' Avg. expression score for this sample: '141.922' Avg. expression score in LCM sample: '200.333' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55400 | OVA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 24 | 7 | 12 | 17 | 77.42% | 58.62% | 31 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.903188' Avg. expression score for this sample: '36.6181' Avg. expression score in LCM sample: '10.5678' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G55400 | OVA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 25 | 10 | 20 | 39 | 71.43% | 66.10% | 35 | 59 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.903188' Avg. expression score for this sample: '52.2281' Avg. expression score in LCM sample: '10.5678' Tissue used: 'full endosperm' |
||||
| AT3G55400 | OVA1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55400 | OVA1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.029 x 10-3 | 51 | 7 | 87.93% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55400 | OVA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.74 x 10-4 | 108 | 17 | 86.40% | 125 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55400 | OVA1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.48316 x 10-1 | 86 | 64 | 29 | 20 | 57.33% | 40.82% | 150 | 49 | TAIR8 |
Avg. embryo expression (dissected): '227.541' Avg. embryo expression (LCM): '223.354' |
|||
| AT3G55390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '452.641' Avg. embryo expression (LCM): '253.633' |
||||||
| AT3G55390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '330.376' Avg. expression score in LCM sample: '120.538' Tissue used: 'full endosperm' |
|||||||
| AT3G55390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '514.562' Avg. expression score in LCM sample: '120.538' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G55390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55380 | UBC14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55380 | UBC14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55380 | UBC14 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55380 | UBC14 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '70.9625' Avg. embryo expression (LCM): '134.05' |
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| AT3G55380 | UBC14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '42.6963' Avg. expression score in LCM sample: '54.4999' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55380 | UBC14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '72.5591' Avg. expression score in LCM sample: '54.4999' Tissue used: 'full endosperm' |
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| AT3G55370 | OBP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.07732' Avg. expression score in LCM sample: '1.94012' Tissue used: 'full endosperm' |
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| AT3G55370 | OBP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.03912' Avg. expression score in LCM sample: '1.94012' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G55370 | OBP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55370 | OBP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55370 | OBP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.08392 x 10-1 | 5 | 2 | 0 | 0 | 71.43% | 7 | 0 | TAIR8 |
Avg. embryo expression (dissected): '39.5638' Avg. embryo expression (LCM): '30.5927' |
||||
| AT3G55370 | OBP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55360 | CER10 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.6 x 10-8 | 48 | 0 | 100.00% | 48 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55360 | CER10 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.74418 x 10-1 | 41 | 40 | 7 | 12 | 50.62% | 63.16% | 81 | 19 | TAIR8 |
Avg. embryo expression (dissected): '343.305' Avg. embryo expression (LCM): '247.806' |
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| AT3G55360 | CER10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.75118 x 10-1 | 29 | 17 | 22 | 40 | 63.04% | 64.52% | 46 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.784025' Avg. expression score for this sample: '136.018' Avg. expression score in LCM sample: '59.1003' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55360 | CER10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.75444 x 10-1 | 47 | 21 | 27 | 69 | 69.12% | 71.88% | 68 | 96 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.784025' Avg. expression score for this sample: '209.745' Avg. expression score in LCM sample: '59.1003' Tissue used: 'full endosperm' |
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| AT3G55360 | CER10 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 21 | 9 | 70.00% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55360 | CER10 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.04577 x 10-1 | 15 | 2 | 88.24% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 33 | 14 | 70.21% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.25117 x 10-1 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.80172 x 10-1 | 1 | 4 | 4 | 3 | 20.00% | 42.86% | 5 | 7 | TAIR8 |
Avg. embryo expression (dissected): '48.4385' Avg. embryo expression (LCM): '51.6785' |
||||
| AT3G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.8901 x 10-2 | 21 | 3 | 87.50% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.07611 x 10-1 | 11 | 4 | 7 | 18 | 73.33% | 72.00% | 15 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '46.3252' Avg. expression score in LCM sample: '31.674' Tissue used: 'full endosperm' |
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| AT3G55350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 3 | 3 | 8 | 25.00% | 72.73% | 4 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '25.2932' Avg. expression score in LCM sample: '31.674' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55340 | PHIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.04916 x 10-1 | 15 | 4 | 4 | 15 | 78.95% | 78.95% | 19 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.698027' Avg. expression score for this sample: '95.17' Avg. expression score in LCM sample: '43.9027' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55340 | PHIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 31 | 24 | 10 | 34 | 56.36% | 77.27% | 55 | 44 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.698027' Avg. expression score for this sample: '145.584' Avg. expression score in LCM sample: '43.9027' Tissue used: 'full endosperm' |
||||
| AT3G55340 | PHIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55340 | PHIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.4798 x 10-1 | 51 | 27 | 65.38% | 78 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55340 | PHIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.3167 x 10-2 | 67 | 13 | 83.75% | 80 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55340 | PHIP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.89073 x 10-1 | 12 | 10 | 2 | 4 | 54.55% | 66.67% | 22 | 6 | TAIR8 |
Avg. embryo expression (dissected): '168.506' Avg. embryo expression (LCM): '258.305' |
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| AT3G55330 | PPL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '569.844' Avg. embryo expression (LCM): '310.071' |
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| AT3G55330 | PPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55330 | PPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '263.065' Avg. expression score in LCM sample: '63.7743' Tissue used: 'full endosperm' |
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| AT3G55330 | PPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '191.555' Avg. expression score in LCM sample: '63.7743' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55330 | PPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55330 | PPL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55320 | ABCB20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.231 x 10-2 | 41 | 6 | 87.23% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55320 | ABCB20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.749 x 10-3 | 130 | 21 | 86.09% | 151 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55320 | ABCB20 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-19 | 305 | 10 | 96.83% | 315 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55320 | ABCB20 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.76336 x 10-1 | 75 | 62 | 17 | 32 | 54.74% | 65.31% | 137 | 49 | TAIR8 |
Avg. embryo expression (dissected): '83.2544' Avg. embryo expression (LCM): '71.5713' |
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| AT3G55320 | ABCB20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.3005 x 10-1 | 65 | 29 | 19 | 46 | 69.15% | 70.77% | 94 | 65 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.007099' Avg. expression score for this sample: '48.7774' Avg. expression score in LCM sample: '55.7345' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55320 | ABCB20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.14 x 10-3 | 106 | 43 | 38 | 160 | 71.14% | 80.81% | 149 | 198 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.007099' Avg. expression score for this sample: '71.0273' Avg. expression score in LCM sample: '55.7345' Tissue used: 'full endosperm' |
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| AT3G55310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '13.2649' Avg. expression score in LCM sample: '4.61515' Tissue used: 'full endosperm' |
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| AT3G55310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '4.33449' Avg. expression score in LCM sample: '4.61515' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '15.8707' Avg. embryo expression (LCM): '5.26204' |
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| AT3G55310 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 4 | 66.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.18887' Avg. embryo expression (LCM): '2.64986' |
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| AT3G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.89998' Avg. expression score in LCM sample: '12.3903' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 1 | 1 | 100.00% | 50.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.10095' Avg. expression score in LCM sample: '12.3903' Tissue used: 'full endosperm' |
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| AT3G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.61147 x 10-1 | 33 | 12 | 73.33% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G55280 | RPL23AB | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.22955 x 10-1 | 211 | 74 | 74.04% | 285 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55280 | RPL23AB | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.29669 x 10-1 | 38 | 12 | 76.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55280 | RPL23AB | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.48989 x 10-1 | 32 | 49 | 8 | 8 | 39.51% | 50.00% | 81 | 16 | TAIR8 |
Avg. embryo expression (dissected): '530.369' Avg. embryo expression (LCM): '1179.1' |
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| AT3G55280 | RPL23AB | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.1118 x 10-2 | 192 | 59 | 76.49% | 251 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55280 | RPL23AB | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.15808 x 10-1 | 61 | 37 | 65 | 164 | 62.24% | 71.62% | 98 | 229 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.646135' Avg. expression score for this sample: '367.898' Avg. expression score in LCM sample: '95.5658' Tissue used: 'full endosperm' |
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| AT3G55280 | RPL23AB | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 13 | 11 | 10 | 28 | 54.17% | 73.68% | 24 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.646135' Avg. expression score for this sample: '225.853' Avg. expression score in LCM sample: '95.5658' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55270 | MKP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.11558 x 10-1 | 26 | 11 | 7 | 33 | 70.27% | 82.50% | 37 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.676085' Avg. expression score for this sample: '155.662' Avg. expression score in LCM sample: '149.052' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G55270 | MKP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.96121 x 10-1 | 29 | 23 | 24 | 57 | 55.77% | 70.37% | 52 | 81 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.676085' Avg. expression score for this sample: '218.881' Avg. expression score in LCM sample: '149.052' Tissue used: 'full endosperm' |
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| AT3G55270 | MKP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.7136 x 10-2 | 19 | 1 | 95.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G55270 | MKP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.896 x 10-3 | 81 | 14 | 85.26% | 95 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |