| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G57590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.94 x 10-3 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.95 x 10-4 | 55 | 3 | 94.83% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.8515 | 21 | 17 | 13 | 6 | 55.26% | 31.58% | 38 | 19 | TAIR8 |
Avg. embryo expression (dissected): '72.1751' Avg. embryo expression (LCM): '56.5387' |
||||
| AT3G57580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.2353 x 10-2 | 41 | 4 | 8 | 13 | 91.11% | 61.90% | 45 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.251284' Avg. expression score for this sample: '57.9724' Avg. expression score in LCM sample: '23.355' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G57580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 61 | 13 | 24 | 16 | 82.43% | 40.00% | 74 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.251284' Avg. expression score for this sample: '104.134' Avg. expression score in LCM sample: '23.355' Tissue used: 'full endosperm' |
|||||
| AT3G57570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.6236 x 10-2 | 31 | 3 | 10 | 29 | 91.18% | 74.36% | 34 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.041798' Avg. expression score for this sample: '66.085' Avg. expression score in LCM sample: '27.3087' Tissue used: 'full endosperm' |
|||||
| AT3G57570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 6 | 5 | 2 | 1 | 54.55% | 33.33% | 11 | 3 | TAIR8 |
Avg. embryo expression (dissected): '55.1358' Avg. embryo expression (LCM): '53.9642' |
||||
| AT3G57570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 0 | 4 | 3 | 100.00% | 42.86% | 8 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.041798' Avg. expression score for this sample: '40.2969' Avg. expression score in LCM sample: '27.3087' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G57570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.8725 x 10-2 | 67 | 6 | 91.78% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.993 x 10-3 | 13 | 12 | 52.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 2 | 85.71% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57560 | NAGK | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57560 | NAGK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '97.1866' Avg. expression score in LCM sample: '32.6147' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G57560 | NAGK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '125.643' Avg. expression score in LCM sample: '32.6147' Tissue used: 'full endosperm' |
||||||
| AT3G57560 | NAGK | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '264.722' Avg. embryo expression (LCM): '275.322' |
|||||
| AT3G57560 | NAGK | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57560 | NAGK | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57550 | AGK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57550 | AGK2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57550 | AGK2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57550 | AGK2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '137.94' Avg. embryo expression (LCM): '108.983' |
|||||
| AT3G57550 | AGK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '152.918' Avg. expression score in LCM sample: '30.8509' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G57550 | AGK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '111.084' Avg. expression score in LCM sample: '30.8509' Tissue used: 'full endosperm' |
||||||
| AT3G57540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.44698 x 10-1 | 57 | 38 | 23 | 26 | 60.00% | 53.06% | 95 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.255989' Avg. expression score for this sample: '142.993' Avg. expression score in LCM sample: '4.68863' Tissue used: 'full endosperm' |
|||||
| AT3G57540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.14286 x 10-1 | 1 | 0 | 0 | 3 | 100.00% | 100.00% | 1 | 3 | TAIR8 |
Avg. embryo expression (dissected): '12.5994' Avg. embryo expression (LCM): '1.00469' |
||||
| AT3G57540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 36 | 15 | 33 | 57 | 70.59% | 63.33% | 51 | 90 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.255989' Avg. expression score for this sample: '227.774' Avg. expression score in LCM sample: '4.68863' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G57540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.39327 x 10-1 | 15 | 5 | 75.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57530 | CPK32 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.10471 x 10-1 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57530 | CPK32 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 6 | 2 | 6 | 57.14% | 75.00% | 14 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.007321' Avg. expression score for this sample: '189.177' Avg. expression score in LCM sample: '46.2396' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G57530 | CPK32 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.209 x 10-3 | 39 | 6 | 7 | 46 | 86.67% | 86.79% | 45 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.007321' Avg. expression score for this sample: '547.304' Avg. expression score in LCM sample: '46.2396' Tissue used: 'full endosperm' |
||||
| AT3G57530 | CPK32 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.81251 x 10-1 | 12 | 7 | 4 | 3 | 63.16% | 42.86% | 19 | 7 | TAIR8 |
Avg. embryo expression (dissected): '235.299' Avg. embryo expression (LCM): '49.8199' |
|||
| AT3G57530 | CPK32 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.17 x 10-4 | 68 | 1 | 98.55% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57530 | CPK32 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.1785 x 10-2 | 44 | 2 | 95.65% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57520 | SIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.54047 x 10-1 | 13 | 4 | 76.47% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57520 | SIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-6 | 118 | 3 | 97.52% | 121 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57520 | SIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57520 | SIP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.1991 x 10-2 | 35 | 11 | 2 | 1 | 76.09% | 33.33% | 46 | 3 | TAIR8 |
Avg. embryo expression (dissected): '176.211' Avg. embryo expression (LCM): '89.6054' |
|||
| AT3G57520 | SIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.80601 x 10-1 | 49 | 4 | 11 | 4 | 92.45% | 26.67% | 53 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00282' Avg. expression score for this sample: '181.541' Avg. expression score in LCM sample: '105.943' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G57520 | SIP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.944 x 10-3 | 65 | 1 | 26 | 51 | 98.48% | 66.23% | 66 | 77 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00282' Avg. expression score for this sample: '193.591' Avg. expression score in LCM sample: '105.943' Tissue used: 'full endosperm' |
||||
| AT3G57510 | ADPG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '.672379' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT3G57510 | ADPG1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.364269' Avg. embryo expression (LCM): '0' |
|||||
| AT3G57510 | ADPG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '.648582' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G57510 | ADPG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57510 | ADPG1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57510 | ADPG1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3.4731' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G57500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.686' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G57500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '29.0455' Avg. embryo expression (LCM): '28.734' |
||||
| AT3G57500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.42976 x 10-1 | 142 | 86 | 62.28% | 228 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.0 x 10-14 | 247 | 31 | 88.85% | 278 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0729 x 10-2 | 82 | 21 | 79.61% | 103 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.422 x 10-3 | 232 | 479 | 48 | 164 | 32.63% | 77.36% | 711 | 212 | TAIR8 |
Avg. embryo expression (dissected): '581.346' Avg. embryo expression (LCM): '742.965' |
||||
| AT3G57490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.29141 x 10-1 | 144 | 200 | 63 | 421 | 41.86% | 86.98% | 344 | 484 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.685465' Avg. expression score for this sample: '325.029' Avg. expression score in LCM sample: '126.226' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G57490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.60831 x 10-1 | 52 | 78 | 22 | 138 | 40.00% | 86.25% | 130 | 160 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.685465' Avg. expression score for this sample: '127.329' Avg. expression score in LCM sample: '126.226' Tissue used: 'full endosperm' |
|||||
| AT3G57480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.80579 x 10-1 | 9 | 0 | 3 | 10 | 100.00% | 76.92% | 9 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.633684' Avg. expression score for this sample: '8.66105' Avg. expression score in LCM sample: '1.29342' Tissue used: 'full endosperm' |
|||||
| AT3G57480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.37186 x 10-1 | 2 | 5 | 1 | 1 | 28.57% | 50.00% | 7 | 2 | TAIR8 |
Avg. embryo expression (dissected): '5.31636' Avg. embryo expression (LCM): '8.89147' |
||||
| AT3G57480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 4 | 4 | 4 | 66.67% | 50.00% | 12 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.633684' Avg. expression score for this sample: '8.43569' Avg. expression score in LCM sample: '1.29342' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G57480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.23437 x 10-1 | 40 | 16 | 71.43% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.3311 x 10-2 | 58 | 8 | 87.88% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.2158 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.18997 x 10-1 | 38 | 25 | 60.32% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.17396 x 10-1 | 63 | 31 | 23 | 54 | 67.02% | 70.13% | 94 | 77 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.153658' Avg. expression score for this sample: '27.8865' Avg. expression score in LCM sample: '9.31848' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G57470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.53775 x 10-1 | 229 | 71 | 123 | 234 | 76.33% | 65.55% | 300 | 357 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.153658' Avg. expression score for this sample: '67.1713' Avg. expression score in LCM sample: '9.31848' Tissue used: 'full endosperm' |
|||||
| AT3G57470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.8242 x 10-1 | 80 | 80 | 34 | 42 | 50.00% | 55.26% | 160 | 76 | TAIR8 |
Avg. embryo expression (dissected): '54.4873' Avg. embryo expression (LCM): '34.624' |
||||
| AT3G57470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.9 x 10-9 | 114 | 9 | 92.68% | 123 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.3 x 10-5 | 114 | 17 | 87.02% | 131 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.27363' Avg. embryo expression (LCM): '0' |
|||||
| AT3G57460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '1.46545' Avg. expression score in LCM sample: '1.3816' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G57460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 2.30769 x 10-1 | 7 | 0 | 0 | 0 | 100.00% | 7 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '7.34707' Avg. expression score in LCM sample: '1.3816' Tissue used: 'full endosperm' |
||||||
| AT3G57450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.4 x 10-16 | 300 | 23 | 30 | 119 | 92.88% | 79.87% | 323 | 149 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-11' Avg. expression score for this sample: '632.78' Avg. expression score in LCM sample: '53.4122' Tissue used: 'full endosperm' |
|||||
| AT3G57450 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.6131 x 10-2 | 54 | 27 | 10 | 9 | 66.67% | 47.37% | 81 | 19 | TAIR8 |
Avg. embryo expression (dissected): '156.534' Avg. embryo expression (LCM): '62.0645' |
||||
| AT3G57450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.66455 x 10-1 | 140 | 48 | 36 | 60 | 74.47% | 62.50% | 188 | 96 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-11' Avg. expression score for this sample: '286.908' Avg. expression score in LCM sample: '53.4122' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G57450 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.468 x 10-2 | 66 | 7 | 90.41% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 37 | 8 | 82.22% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.607 x 10-3 | 64 | 28 | 69.57% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.926721' Avg. expression score in LCM sample: '1.30811' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G57440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.62302' Avg. expression score in LCM sample: '1.30811' Tissue used: 'full endosperm' |
|||||||
| AT3G57440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.69556' Avg. embryo expression (LCM): '5.60113' |
||||||
| AT3G57440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G57440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G57430 | OTP84 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.0056 x 10-2 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57430 | OTP84 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.7583 x 10-2 | 14 | 1 | 93.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57430 | OTP84 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G57430 | OTP84 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 13 | 15 | 2 | 4 | 46.43% | 66.67% | 28 | 6 | TAIR8 |
Avg. embryo expression (dissected): '32.7337' Avg. embryo expression (LCM): '23.3966' |
|||
| AT3G57430 | OTP84 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.21739 x 10-1 | 9 | 1 | 0 | 3 | 90.00% | 100.00% | 10 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.51661' Avg. expression score in LCM sample: '2.07241' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G57430 | OTP84 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.34478 x 10-1 | 4 | 4 | 10 | 13 | 50.00% | 56.52% | 8 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '12.9653' Avg. expression score in LCM sample: '2.07241' Tissue used: 'full endosperm' |
||||
| AT3G57420 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.9006 x 10-2 | 10 | 7 | 1 | 27 | 58.82% | 96.43% | 17 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.110621' Avg. expression score for this sample: '216.449' Avg. expression score in LCM sample: '62.3045' Tissue used: 'full endosperm' |
|||||
| AT3G57420 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '91.3567' Avg. embryo expression (LCM): '97.9192' |