| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G59650 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '122.448' Avg. expression score in LCM sample: '37.2445' Tissue used: 'full endosperm' |
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| AT3G59650 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '464.824' Avg. embryo expression (LCM): '349.995' |
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| AT3G59650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '211.222' Avg. expression score in LCM sample: '37.2445' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.73475 x 10-1 | 350 | 137 | 71.87% | 487 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.4265 x 10-2 | 27 | 5 | 84.38% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.28514 x 10-1 | 117 | 29 | 112 | 176 | 80.14% | 61.11% | 146 | 288 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.512731' Avg. expression score for this sample: '318.509' Avg. expression score in LCM sample: '90.1717' Tissue used: 'full endosperm' |
|||||
| AT3G59640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.3 x 10-11 | 384 | 62 | 86.10% | 446 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.82461 x 10-1 | 43 | 14 | 12 | 30 | 75.44% | 71.43% | 57 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.512731' Avg. expression score for this sample: '238.287' Avg. expression score in LCM sample: '90.1717' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 22 | 27 | 2 | 5 | 44.90% | 71.43% | 49 | 7 | TAIR8 |
Avg. embryo expression (dissected): '204.062' Avg. embryo expression (LCM): '157.949' |
||||
| AT3G59630 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '16.1069' Avg. embryo expression (LCM): '16.3889' |
|||||
| AT3G59630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.6249' Avg. expression score in LCM sample: '5.59991' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59630 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.375 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59630 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59630 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.39' Avg. expression score in LCM sample: '5.59991' Tissue used: 'full endosperm' |
||||||
| AT3G59620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4 x 10-7 | 52 | 0 | 0 | 8 | 100.00% | 100.00% | 52 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-09' Avg. expression score for this sample: '61.1473' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G59620 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 73 | 0 | 100.00% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59620 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.901 x 10-3 | 20 | 0 | 0 | 2 | 100.00% | 100.00% | 20 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.1e-09' Avg. expression score for this sample: '20.2099' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59620 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.400998' Avg. embryo expression (LCM): '0' |
||||||
| AT3G59620 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59610 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8985 x 10-2 | 201 | 45 | 81.71% | 246 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 2 | 6 | 0.00% | 75.00% | 1 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.751317' Avg. expression score for this sample: '2.63858' Avg. expression score in LCM sample: '37.7736' Tissue used: 'full endosperm' |
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| AT3G59610 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G59610 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.80172 x 10-1 | 5 | 1 | 5 | 1 | 83.33% | 16.67% | 6 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.751317' Avg. expression score for this sample: '4.16264' Avg. expression score in LCM sample: '37.7736' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59610 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.26019 x 10-1 | 537 | 487 | 52.44% | 1024 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59600 | NRPB8B | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59600 | NRPB8B | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '69.7394' Avg. embryo expression (LCM): '59.0755' |
|||||
| AT3G59600 | NRPB8B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '46.9226' Avg. expression score in LCM sample: '23.7077' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59600 | NRPB8B | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59600 | NRPB8B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '113.031' Avg. expression score in LCM sample: '23.7077' Tissue used: 'full endosperm' |
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| AT3G59600 | NRPB8B | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59590 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.82123 x 10-1 | 24 | 19 | 55.81% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.31075' Avg. expression score in LCM sample: '45.3578' Tissue used: 'full endosperm' |
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| AT3G59590 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 1 | 5 | 66.67% | 83.33% | 3 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '20.7581' Avg. expression score in LCM sample: '45.3578' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.04163 x 10-1 | 63 | 60 | 51.22% | 123 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59590 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.49518' Avg. embryo expression (LCM): '0' |
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| AT3G59590 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '95.3314' Avg. expression score in LCM sample: '6.64346' Tissue used: 'full endosperm' |
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| AT3G59580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.53904' Avg. embryo expression (LCM): '0' |
||||||
| AT3G59580 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '22.457' Avg. expression score in LCM sample: '6.64346' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '16.8611' Avg. embryo expression (LCM): '18.6997' |
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| AT3G59570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.1436' Avg. expression score in LCM sample: '2.8073' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.3245' Avg. expression score in LCM sample: '2.8073' Tissue used: 'full endosperm' |
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| AT3G59550 | SYN3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 3 | 3 | 100.00% | 50.00% | 1 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.82637' Avg. expression score in LCM sample: '8.36311' Tissue used: 'full endosperm' |
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| AT3G59550 | SYN3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.19846 x 10-1 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G59550 | SYN3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 2 | 1 | 2 | 66.67% | 66.67% | 6 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.3956' Avg. expression score in LCM sample: '8.36311' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59550 | SYN3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.73352 x 10-1 | 4 | 4 | 50.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G59550 | SYN3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.49887 x 10-1 | 6 | 13 | 1 | 1 | 31.58% | 50.00% | 19 | 2 | TAIR8 |
Avg. embryo expression (dissected): '21.5277' Avg. embryo expression (LCM): '31.1453' |
|||
| AT3G59550 | SYN3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.29412 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G59540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.1637 x 10-1 | 58 | 17 | 77.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.8 x 10-5 | 226 | 53 | 81.00% | 279 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.6775 x 10-1 | 171 | 88 | 108 | 270 | 66.02% | 71.43% | 259 | 378 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.533542' Avg. expression score for this sample: '1757.63' Avg. expression score in LCM sample: '575.512' Tissue used: 'full endosperm' |
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| AT3G59540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.32167 x 10-1 | 56 | 35 | 7 | 8 | 61.54% | 53.33% | 91 | 15 | TAIR8 |
Avg. embryo expression (dissected): '3977.18' Avg. embryo expression (LCM): '5206.62' |
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| AT3G59540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.10044 x 10-1 | 25 | 18 | 11 | 21 | 58.14% | 65.62% | 43 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.533542' Avg. expression score for this sample: '1699.22' Avg. expression score in LCM sample: '575.512' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G59540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.11377 x 10-1 | 188 | 99 | 65.51% | 287 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59530 | LAP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59530 | LAP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '29.633' Avg. embryo expression (LCM): '7.53515' |
||||
| AT3G59530 | LAP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '26.2151' Avg. expression score in LCM sample: '9.80351' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59530 | LAP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59530 | LAP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.628' Avg. expression score in LCM sample: '9.80351' Tissue used: 'full endosperm' |
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| AT3G59530 | LAP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G59520 | RBL13 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.139 x 10-3 | 155 | 31 | 83.33% | 186 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G59520 | RBL13 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.37558 x 10-1 | 86 | 37 | 19 | 70 | 69.92% | 78.65% | 123 | 89 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.068074' Avg. expression score for this sample: '77.9726' Avg. expression score in LCM sample: '37.8471' Tissue used: 'full endosperm' |
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| AT3G59520 | RBL13 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.39306 x 10-1 | 46 | 21 | 25 | 73 | 68.66% | 74.49% | 67 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.068074' Avg. expression score for this sample: '83.7078' Avg. expression score in LCM sample: '37.8471' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59520 | RBL13 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.46 x 10-4 | 148 | 22 | 87.06% | 170 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G59520 | RBL13 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.96072 x 10-1 | 37 | 26 | 13 | 22 | 58.73% | 62.86% | 63 | 35 | TAIR8 |
Avg. embryo expression (dissected): '84.3213' Avg. embryo expression (LCM): '59.4272' |
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| AT3G59520 | RBL13 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.75151 x 10-1 | 11 | 5 | 68.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G59510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G59510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 2 | 0 | 2 | 50.00% | 100.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.840324' Avg. expression score in LCM sample: '9.33318' Tissue used: 'full endosperm' |
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| AT3G59510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.16667 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '.821888' Avg. embryo expression (LCM): '0' |
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| AT3G59510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 1 | 3 | 0.00% | 75.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.824407' Avg. expression score in LCM sample: '9.33318' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.92308 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.09965 x 10-1 | 278 | 116 | 70.56% | 394 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.10944 x 10-1 | 107 | 95 | 17 | 14 | 52.97% | 45.16% | 202 | 31 | TAIR8 |
Avg. embryo expression (dissected): '144.422' Avg. embryo expression (LCM): '174.363' |
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| AT3G59500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.96847 x 10-1 | 189 | 75 | 90 | 167 | 71.59% | 64.98% | 264 | 257 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.113928' Avg. expression score for this sample: '212.824' Avg. expression score in LCM sample: '86.8647' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.5949 x 10-2 | 105 | 32 | 76.64% | 137 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.9 x 10-18 | 400 | 50 | 88.89% | 450 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.23766 x 10-1 | 290 | 98 | 164 | 328 | 74.74% | 66.67% | 388 | 492 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.113928' Avg. expression score for this sample: '274.3' Avg. expression score in LCM sample: '86.8647' Tissue used: 'full endosperm' |
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| AT3G59490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.5204 x 10-2 | 15 | 10 | 9 | 65 | 60.00% | 87.84% | 25 | 74 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.009326' Avg. expression score for this sample: '58.6106' Avg. expression score in LCM sample: '13.4339' Tissue used: 'full endosperm' |
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| AT3G59490 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.20692 x 10-1 | 77 | 9 | 89.53% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59490 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.05483 x 10-1 | 7 | 2 | 2 | 13 | 77.78% | 86.67% | 9 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.009326' Avg. expression score for this sample: '18.9216' Avg. expression score in LCM sample: '13.4339' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G59490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.40513 x 10-1 | 144 | 28 | 83.72% | 172 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59490 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 4 | 2 | 2 | 55.56% | 50.00% | 9 | 4 | TAIR8 |
Avg. embryo expression (dissected): '25.5221' Avg. embryo expression (LCM): '28.0559' |
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| AT3G59490 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.26779 x 10-1 | 19 | 5 | 79.17% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.88212 x 10-1 | 131 | 63 | 67.53% | 194 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G59480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 16 | 11 | 16 | 34 | 59.26% | 68.00% | 27 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '20.0109' Avg. expression score in LCM sample: '4.83561' Tissue used: 'full endosperm' |
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| AT3G59480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.954222' Avg. embryo expression (LCM): '1.0298' |