| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT3G63300 | FKD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.35267 x 10-1 | 15 | 6 | 71.43% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63300 | FKD1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.6201 x 10-1 | 38 | 78 | 30 | 47 | 32.76% | 61.04% | 116 | 77 | TAIR8 |
Avg. embryo expression (dissected): '154.155' Avg. embryo expression (LCM): '161.189' |
|||
| AT3G63300 | FKD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.85844 x 10-1 | 20 | 13 | 13 | 19 | 60.61% | 59.38% | 33 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.183236' Avg. expression score for this sample: '19.3476' Avg. expression score in LCM sample: '4.18891' Tissue used: 'full endosperm' |
||||
| AT3G63300 | FKD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.40904 x 10-1 | 15 | 18 | 7 | 15 | 45.45% | 68.18% | 33 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.183236' Avg. expression score for this sample: '26.5109' Avg. expression score in LCM sample: '4.18891' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '44.258' Avg. expression score in LCM sample: '41.7862' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G63290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 0 | 1 | 0 | 100.00% | 0.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '88.1374' Avg. embryo expression (LCM): '105.605' |
||||
| AT3G63290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 2 | 4 | 100.00% | 66.67% | 1 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '43.177' Avg. expression score in LCM sample: '41.7862' Tissue used: 'full endosperm' |
|||||
| AT3G63290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63280 | NEK4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63280 | NEK4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63280 | NEK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 0 | 1 | 1 | 100.00% | 50.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.323077' Avg. expression score for this sample: '1.70457' Avg. expression score in LCM sample: '1.4404' Tissue used: 'full endosperm' |
||||
| AT3G63280 | NEK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.323077' Avg. expression score for this sample: '1.51293' Avg. expression score in LCM sample: '1.4404' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G63280 | NEK4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.93027 x 10-1 | 2 | 9 | 0 | 0 | 18.18% | 11 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.19554' Avg. embryo expression (LCM): '4.28247' |
||||
| AT3G63280 | NEK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63270 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63270 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '22.1062' Avg. embryo expression (LCM): '15.9117' |
|||||
| AT3G63270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.0757' Avg. expression score in LCM sample: '16.7703' Tissue used: 'full endosperm' |
|||||
| AT3G63270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '20.6505' Avg. expression score in LCM sample: '16.7703' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G63260 | ATMRK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 0 | 6 | 5 | 100.00% | 45.45% | 3 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.635353' Avg. expression score for this sample: '90.0717' Avg. expression score in LCM sample: '89.672' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63260 | ATMRK1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 1 | 2 | 1 | 75.00% | 33.33% | 4 | 3 | TAIR8 |
Avg. embryo expression (dissected): '86.2787' Avg. embryo expression (LCM): '91.1878' |
|||
| AT3G63260 | ATMRK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.29888 x 10-1 | 20 | 4 | 1 | 4 | 83.33% | 80.00% | 24 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.635353' Avg. expression score for this sample: '87.4948' Avg. expression score in LCM sample: '89.672' Tissue used: 'full endosperm' |
||||
| AT3G63260 | ATMRK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.18972 x 10-1 | 21 | 2 | 91.30% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63260 | ATMRK1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63260 | ATMRK1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.5033 x 10-2 | 18 | 1 | 94.74% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63250 | HMT2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.085 x 10-2 | 54 | 9 | 85.71% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63250 | HMT2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 22 | 8 | 73.33% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63250 | HMT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.988 x 10-3 | 38 | 13 | 37 | 142 | 74.51% | 79.33% | 51 | 179 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042675' Avg. expression score for this sample: '106.114' Avg. expression score in LCM sample: '96.4036' Tissue used: 'full endosperm' |
||||
| AT3G63250 | HMT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 42 | 27 | 27 | 67 | 60.87% | 71.28% | 69 | 94 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.042675' Avg. expression score for this sample: '226.412' Avg. expression score in LCM sample: '96.4036' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63250 | HMT2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 37 | 45 | 4 | 10 | 45.12% | 71.43% | 82 | 14 | TAIR8 |
Avg. embryo expression (dissected): '234.292' Avg. embryo expression (LCM): '180.467' |
|||
| AT3G63250 | HMT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-7 | 101 | 5 | 95.28% | 106 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63240 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.82021 x 10-1 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.389 x 10-3 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63240 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.22208 x 10-1 | 13 | 12 | 7 | 1 | 52.00% | 12.50% | 25 | 8 | TAIR8 |
Avg. embryo expression (dissected): '22.5784' Avg. embryo expression (LCM): '18.0216' |
||||
| AT3G63240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.29569 x 10-1 | 10 | 12 | 2 | 6 | 45.45% | 75.00% | 22 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.626793' Avg. expression score for this sample: '10.3315' Avg. expression score in LCM sample: '2.63093' Tissue used: 'full endosperm' |
|||||
| AT3G63240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 0 | 3 | 66.67% | 100.00% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.626793' Avg. expression score for this sample: '4.44247' Avg. expression score in LCM sample: '2.63093' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G63233 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G63233 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G63233 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.19032' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G63233 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63233 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63233 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT3G63230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G63230 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT3G63230 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63220 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.96 x 10-4 | 122 | 26 | 82.43% | 148 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.16784 x 10-1 | 190 | 88 | 68.35% | 278 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.88847 x 10-1 | 20 | 6 | 76.92% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63220 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.45403 x 10-1 | 45 | 55 | 13 | 10 | 45.00% | 43.48% | 100 | 23 | TAIR8 |
Avg. embryo expression (dissected): '112.064' Avg. embryo expression (LCM): '72.149' |
||||
| AT3G63220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.03967 x 10-1 | 44 | 13 | 13 | 43 | 77.19% | 76.79% | 57 | 56 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '62.6485' Avg. expression score in LCM sample: '79.1042' Tissue used: 'full endosperm' |
|||||
| AT3G63220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.88891 x 10-1 | 92 | 51 | 55 | 81 | 64.34% | 59.56% | 143 | 136 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '175.839' Avg. expression score in LCM sample: '79.1042' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G63210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.5285 x 10-2 | 32 | 5 | 2 | 6 | 86.49% | 75.00% | 37 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.1e-07' Avg. expression score for this sample: '17.9559' Avg. expression score in LCM sample: '4.05662' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G63210 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.77086 x 10-1 | 13 | 4 | 6 | 3 | 76.47% | 33.33% | 17 | 9 | TAIR8 |
Avg. embryo expression (dissected): '16.9346' Avg. embryo expression (LCM): '15.6103' |
||||
| AT3G63210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 x 10-6 | 65 | 11 | 1 | 57 | 85.53% | 98.28% | 76 | 58 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.1e-07' Avg. expression score for this sample: '44.9377' Avg. expression score in LCM sample: '4.05662' Tissue used: 'full endosperm' |
|||||
| AT3G63210 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-10 | 451 | 1 | 99.78% | 452 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.8603 x 10-2 | 43 | 0 | 100.00% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.0274 x 10-2 | 60 | 1 | 98.36% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63200 | PLP9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.53459 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63200 | PLP9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63200 | PLP9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 25 | 17 | 14 | 35 | 59.52% | 71.43% | 42 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '44.5549' Avg. expression score in LCM sample: '7.46654' Tissue used: 'full endosperm' |
||||
| AT3G63200 | PLP9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 2 | 1 | 6 | 66.67% | 85.71% | 6 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '26.5079' Avg. expression score in LCM sample: '7.46654' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63200 | PLP9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 12 | 11 | 2 | 3 | 52.17% | 60.00% | 23 | 5 | TAIR8 |
Avg. embryo expression (dissected): '114.573' Avg. embryo expression (LCM): '162.558' |
|||
| AT3G63200 | PLP9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.7413 x 10-2 | 6 | 10 | 37.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63190 | RRF | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.73953 x 10-1 | 13 | 3 | 81.25% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63190 | RRF | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63190 | RRF | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.43891 x 10-1 | 22 | 8 | 73.33% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63190 | RRF | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 19 | 21 | 3 | 4 | 47.50% | 57.14% | 40 | 7 | TAIR8 |
Avg. embryo expression (dissected): '210.061' Avg. embryo expression (LCM): '258.531' |
|||
| AT3G63190 | RRF | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.07048 x 10-1 | 11 | 8 | 11 | 36 | 57.89% | 76.60% | 19 | 47 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '60.7814' Avg. expression score in LCM sample: '13.1546' Tissue used: 'full endosperm' |
||||
| AT3G63190 | RRF | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.6985 x 10-1 | 2 | 4 | 2 | 2 | 33.33% | 50.00% | 6 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '48.3059' Avg. expression score in LCM sample: '13.1546' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63180 | TKL | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.39631 x 10-1 | 31 | 14 | 28 | 25 | 68.89% | 47.17% | 45 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.302631' Avg. expression score for this sample: '99.979' Avg. expression score in LCM sample: '68.7715' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63180 | TKL | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.72294 x 10-1 | 42 | 27 | 16 | 12 | 60.87% | 42.86% | 69 | 28 | TAIR8 |
Avg. embryo expression (dissected): '165.202' Avg. embryo expression (LCM): '126.477' |
|||
| AT3G63180 | TKL | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.06163 x 10-1 | 92 | 34 | 54 | 70 | 73.02% | 56.45% | 126 | 124 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.302631' Avg. expression score for this sample: '141.139' Avg. expression score in LCM sample: '68.7715' Tissue used: 'full endosperm' |
||||
| AT3G63180 | TKL | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.5 x 10-8 | 69 | 5 | 93.24% | 74 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63180 | TKL | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.4694 x 10-2 | 18 | 2 | 90.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63180 | TKL | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.8686 x 10-2 | 21 | 5 | 80.77% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63170 | FAP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.98914 x 10-1 | 7 | 2 | 77.78% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63170 | FAP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.22269 x 10-1 | 23 | 8 | 74.19% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63170 | FAP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.9461 x 10-1 | 26 | 23 | 19 | 67 | 53.06% | 77.91% | 49 | 86 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.587412' Avg. expression score for this sample: '112.444' Avg. expression score in LCM sample: '88.7607' Tissue used: 'full endosperm' |
||||
| AT3G63170 | FAP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.5665 x 10-1 | 38 | 29 | 26 | 42 | 56.72% | 61.76% | 67 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.587412' Avg. expression score for this sample: '111.722' Avg. expression score in LCM sample: '88.7607' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63170 | FAP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.31606 x 10-1 | 49 | 59 | 10 | 9 | 45.37% | 47.37% | 108 | 19 | TAIR8 |
Avg. embryo expression (dissected): '134.492' Avg. embryo expression (LCM): '148.731' |
|||
| AT3G63170 | FAP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.6531 x 10-1 | 14 | 5 | 73.68% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63160 | OEP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.60595 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63160 | OEP6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63160 | OEP6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.20274 x 10-1 | 7 | 11 | 38.89% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63160 | OEP6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.07015 x 10-1 | 282 | 253 | 144 | 88 | 52.71% | 37.93% | 535 | 232 | TAIR8 |
Avg. embryo expression (dissected): '994.172' Avg. embryo expression (LCM): '159.092' |
|||
| AT3G63160 | OEP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.46001 x 10-1 | 50 | 21 | 35 | 44 | 70.42% | 55.70% | 71 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.016285' Avg. expression score for this sample: '68.4329' Avg. expression score in LCM sample: '5.644' Tissue used: 'full endosperm' |
||||
| AT3G63160 | OEP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.397 x 10-3 | 42 | 34 | 27 | 14 | 55.26% | 34.15% | 76 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.016285' Avg. expression score for this sample: '90.1145' Avg. expression score in LCM sample: '5.644' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63150 | MIRO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.87931 x 10-1 | 54 | 18 | 21 | 35 | 75.00% | 62.50% | 72 | 56 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.369812' Avg. expression score for this sample: '50.2429' Avg. expression score in LCM sample: '35.7159' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63150 | MIRO2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.0795 x 10-1 | 20 | 22 | 9 | 6 | 47.62% | 40.00% | 42 | 15 | TAIR8 |
Avg. embryo expression (dissected): '45.1605' Avg. embryo expression (LCM): '22.4799' |
|||
| AT3G63150 | MIRO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.99269 x 10-1 | 55 | 21 | 25 | 60 | 72.37% | 70.59% | 76 | 85 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.369812' Avg. expression score for this sample: '47.2686' Avg. expression score in LCM sample: '35.7159' Tissue used: 'full endosperm' |
||||
| AT3G63150 | MIRO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.6 x 10-10 | 212 | 18 | 92.17% | 230 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63150 | MIRO2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.00369 x 10-1 | 13 | 6 | 68.42% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63150 | MIRO2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.1194 x 10-2 | 198 | 123 | 61.68% | 321 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |