| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G58050 | SVL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58050 | SVL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58040 | FIP1[V] | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.207 x 10-3 | 1235 | 476 | 565 | 1155 | 72.18% | 67.15% | 1711 | 1720 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.1e-13' Avg. expression score for this sample: '1224.59' Avg. expression score in LCM sample: '274.175' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58040 | FIP1[V] | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.6 x 10-13 | 1803 | 538 | 627 | 1467 | 77.02% | 70.06% | 2341 | 2094 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.1e-13' Avg. expression score for this sample: '1070.12' Avg. expression score in LCM sample: '274.175' Tissue used: 'full endosperm' |
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| AT5G58040 | FIP1[V] | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28756 x 10-1 | 664 | 575 | 320 | 281 | 53.59% | 46.76% | 1239 | 601 | TAIR8 |
Avg. embryo expression (dissected): '1052.41' Avg. embryo expression (LCM): '547.29' |
|||
| AT5G58040 | FIP1[V] | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.3535 x 10-2 | 234 | 122 | 65.73% | 356 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58040 | FIP1[V] | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.9 x 10-5 | 1851 | 871 | 68.00% | 2722 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58040 | FIP1[V] | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3430 | 516 | 86.92% | 3946 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.3842 x 10-1 | 121 | 39 | 52 | 86 | 75.62% | 62.32% | 160 | 138 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000144' Avg. expression score for this sample: '212.973' Avg. expression score in LCM sample: '119.303' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.8 x 10-5 | 146 | 43 | 70 | 268 | 77.25% | 79.29% | 189 | 338 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000144' Avg. expression score for this sample: '228.864' Avg. expression score in LCM sample: '119.303' Tissue used: 'full endosperm' |
|||||
| AT5G58030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.0199 x 10-1 | 65 | 75 | 12 | 8 | 46.43% | 40.00% | 140 | 20 | TAIR8 |
Avg. embryo expression (dissected): '172.456' Avg. embryo expression (LCM): '279.667' |
||||
| AT5G58030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.1901 | 58 | 12 | 82.86% | 70 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.32 x 10-4 | 239 | 42 | 85.05% | 281 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-10 | 345 | 37 | 90.31% | 382 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.3238 x 10-2 | 2846 | 1232 | 1321 | 2664 | 69.79% | 66.85% | 4078 | 3985 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.7e-20' Avg. expression score for this sample: '4742.84' Avg. expression score in LCM sample: '1613.65' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.7 x 10-29 | 2907 | 959 | 916 | 2711 | 75.19% | 74.74% | 3866 | 3627 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.7e-20' Avg. expression score for this sample: '2863.5' Avg. expression score in LCM sample: '1613.65' Tissue used: 'full endosperm' |
|||||
| AT5G58020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.1529 x 10-2 | 1216 | 1017 | 303 | 296 | 54.46% | 49.42% | 2233 | 599 | TAIR8 |
Avg. embryo expression (dissected): '2573.22' Avg. embryo expression (LCM): '1894.27' |
||||
| AT5G58020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.5609 x 10-2 | 520 | 177 | 74.61% | 697 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.591 x 10-3 | 2924 | 1024 | 74.06% | 3948 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3563 | 640 | 84.77% | 4203 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58010 | LRL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.04316' Avg. expression score in LCM sample: '1.45509' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G58010 | LRL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '3.19813' Avg. expression score in LCM sample: '1.45509' Tissue used: 'full endosperm' |
||||||
| AT5G58010 | LRL3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.04514' Avg. embryo expression (LCM): '0' |
|||||
| AT5G58010 | LRL3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58010 | LRL3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58010 | LRL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58005 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.76471 x 10-1 | 4 | 1 | 0 | 4 | 80.00% | 100.00% | 5 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.058117' Avg. expression score for this sample: '147.011' Avg. expression score in LCM sample: '40.625' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58005 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.63711 x 10-1 | 17 | 1 | 8 | 23 | 94.44% | 74.19% | 18 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.058117' Avg. expression score for this sample: '190.489' Avg. expression score in LCM sample: '40.625' Tissue used: 'full endosperm' |
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| AT5G58005 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 3 | 0 | 1 | 25.00% | 100.00% | 4 | 1 | TAIR8 |
Avg. embryo expression (dissected): '148.291' Avg. embryo expression (LCM): '179.701' |
||||
| AT5G58005 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58005 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 28 | 6 | 82.35% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58005 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2871 x 10-2 | 62 | 2 | 96.88% | 64 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58003 | CPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.69751 x 10-1 | 34 | 14 | 5 | 32 | 70.83% | 86.49% | 48 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '161.236' Avg. expression score in LCM sample: '58.9092' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58003 | CPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.0817 x 10-1 | 29 | 26 | 27 | 51 | 52.73% | 65.38% | 55 | 78 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '90.4413' Avg. expression score in LCM sample: '58.9092' Tissue used: 'full endosperm' |
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| AT5G58003 | CPL4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.77087 x 10-1 | 20 | 11 | 3 | 2 | 64.52% | 40.00% | 31 | 5 | TAIR8 |
Avg. embryo expression (dissected): '154.38' Avg. embryo expression (LCM): '98.2332' |
|||
| AT5G58003 | CPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.37915 x 10-1 | 2 | 3 | 40.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58003 | CPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.1337 x 10-1 | 116 | 55 | 67.84% | 171 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58003 | CPL4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.1715 x 10-1 | 65 | 22 | 74.71% | 87 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 20 | 12 | 12 | 24 | 62.50% | 66.67% | 32 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.223158' Avg. expression score for this sample: '157.065' Avg. expression score in LCM sample: '61.1286' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.59606 x 10-1 | 137 | 48 | 61 | 138 | 74.05% | 69.35% | 185 | 199 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.223158' Avg. expression score for this sample: '714.325' Avg. expression score in LCM sample: '61.1286' Tissue used: 'full endosperm' |
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| AT5G58000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 6 | 4 | 6 | 5 | 60.00% | 45.45% | 10 | 11 | TAIR8 |
Avg. embryo expression (dissected): '104.801' Avg. embryo expression (LCM): '24.9037' |
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| AT5G58000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 33 | 14 | 70.21% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-6 | 226 | 37 | 85.93% | 263 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-8 | 125 | 10 | 92.59% | 135 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57990 | UBP23 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 87 | 29 | 48 | 65 | 75.00% | 57.52% | 116 | 113 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.06182' Avg. expression score for this sample: '242.297' Avg. expression score in LCM sample: '50.502' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57990 | UBP23 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.9903 x 10-2 | 331 | 93 | 144 | 268 | 78.07% | 65.05% | 424 | 412 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.06182' Avg. expression score for this sample: '419.374' Avg. expression score in LCM sample: '50.502' Tissue used: 'full endosperm' |
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| AT5G57990 | UBP23 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.64 x 10-3 | 114 | 51 | 26 | 27 | 69.09% | 50.94% | 165 | 53 | TAIR8 |
Avg. embryo expression (dissected): '373.431' Avg. embryo expression (LCM): '384.041' |
|||
| AT5G57990 | UBP23 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.86599 x 10-1 | 51 | 19 | 72.86% | 70 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57990 | UBP23 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.07865 x 10-1 | 220 | 72 | 75.34% | 292 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57990 | UBP23 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-15 | 485 | 68 | 87.70% | 553 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57980 | RPB5C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.07659' Avg. expression score in LCM sample: '4.65924' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57980 | RPB5C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.5688' Avg. expression score in LCM sample: '4.65924' Tissue used: 'full endosperm' |
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| AT5G57980 | RPB5C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '7.36157' Avg. embryo expression (LCM): '15.9243' |
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| AT5G57980 | RPB5C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57980 | RPB5C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57980 | RPB5C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '31.4004' Avg. expression score in LCM sample: '16.5058' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 1 | 0 | 1 | 66.67% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '21.1409' Avg. expression score in LCM sample: '16.5058' Tissue used: 'full endosperm' |
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| AT5G57970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '20.3069' Avg. embryo expression (LCM): '21.5631' |
|||||
| AT5G57970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 1 | 1 | 100.00% | 50.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '11.2517' Avg. expression score in LCM sample: '3.68918' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 7 | 1 | 6 | 8 | 87.50% | 57.14% | 8 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '27.3064' Avg. expression score in LCM sample: '3.68918' Tissue used: 'full endosperm' |
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| AT5G57960 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.46965 x 10-1 | 6 | 2 | 2 | 2 | 75.00% | 50.00% | 8 | 4 | TAIR8 |
Avg. embryo expression (dissected): '27.303' Avg. embryo expression (LCM): '18.8881' |
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| AT5G57960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.19048 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57960 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.92112 x 10-1 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '69.0875' Avg. expression score in LCM sample: '31.0273' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57950 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '75.3947' Avg. expression score in LCM sample: '31.0273' Tissue used: 'full endosperm' |
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| AT5G57950 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '92.5327' Avg. embryo expression (LCM): '97.1908' |
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| AT5G57950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G57950 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G57950 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G57940 | CNGC5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 2 | 6 | 8 | 80.00% | 57.14% | 10 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.245553' Avg. expression score for this sample: '19.995' Avg. expression score in LCM sample: '5.54111' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57940 | CNGC5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.42375 x 10-1 | 49 | 8 | 13 | 21 | 85.96% | 61.76% | 57 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.245553' Avg. expression score for this sample: '45.9877' Avg. expression score in LCM sample: '5.54111' Tissue used: 'full endosperm' |
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| AT5G57940 | CNGC5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.67472 x 10-1 | 18 | 11 | 4 | 7 | 62.07% | 63.64% | 29 | 11 | TAIR8 |
Avg. embryo expression (dissected): '33.8431' Avg. embryo expression (LCM): '21.7891' |
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| AT5G57940 | CNGC5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.8735 x 10-2 | 10 | 8 | 55.56% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57940 | CNGC5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-5 | 46 | 0 | 100.00% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57940 | CNGC5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-5 | 59 | 1 | 98.33% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57930 | APO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 10 | 5 | 18 | 50.00% | 78.26% | 20 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '172.223' Avg. expression score in LCM sample: '68.5364' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57930 | APO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 16 | 9 | 8 | 21 | 64.00% | 72.41% | 25 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '111.502' Avg. expression score in LCM sample: '68.5364' Tissue used: 'full endosperm' |
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| AT5G57930 | APO2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.58973 x 10-1 | 18 | 33 | 2 | 6 | 35.29% | 75.00% | 51 | 8 | TAIR8 |
Avg. embryo expression (dissected): '295.715' Avg. embryo expression (LCM): '230.186' |
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| AT5G57930 | APO2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G57930 | APO2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.4559 x 10-2 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57930 | APO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.00427 x 10-1 | 10 | 10 | 50.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57920 | ENODL10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.62182 x 10-1 | 650 | 270 | 407 | 579 | 70.65% | 58.72% | 920 | 986 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.466922' Avg. expression score for this sample: '4024.68' Avg. expression score in LCM sample: '2593.99' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57920 | ENODL10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.58709 x 10-1 | 305 | 158 | 298 | 644 | 65.87% | 68.37% | 463 | 942 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.466922' Avg. expression score for this sample: '1537.22' Avg. expression score in LCM sample: '2593.99' Tissue used: 'full endosperm' |
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| AT5G57920 | ENODL10 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.53007 x 10-1 | 23 | 11 | 10 | 11 | 67.65% | 52.38% | 34 | 21 | TAIR8 |
Avg. embryo expression (dissected): '167.337' Avg. embryo expression (LCM): '45.1606' |
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| AT5G57920 | ENODL10 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 80 | 41 | 66.12% | 121 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57920 | ENODL10 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.343 x 10-3 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57920 | ENODL10 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.33257 x 10-1 | 24 | 14 | 63.16% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G57910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '201.484' Avg. expression score in LCM sample: '46.71' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57910 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '339.597' Avg. expression score in LCM sample: '46.71' Tissue used: 'full endosperm' |
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| AT5G57910 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '13.7648' Avg. embryo expression (LCM): '9.98407' |
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| AT5G57910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G57910 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G57910 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G57900 | SKIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 6.4749 x 10-1 | 25 | 7 | 5 | 9 | 78.12% | 64.29% | 32 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.7e-07' Avg. expression score for this sample: '76.8093' Avg. expression score in LCM sample: '31.38' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G57900 | SKIP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 4.1 x 10-11 | 49 | 1 | 0 | 54 | 98.00% | 100.00% | 50 | 54 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.7e-07' Avg. expression score for this sample: '86.9419' Avg. expression score in LCM sample: '31.38' Tissue used: 'full endosperm' |