| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G00040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.65322 x 10-1 | 18 | 3 | 0 | 2 | 85.71% | 100.00% | 21 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.63191' Avg. expression score for this sample: '70.0412' Avg. expression score in LCM sample: '34.4813' Tissue used: 'full endosperm' |
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| AT4G00040 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.84622 x 10-1 | 11 | 2 | 84.62% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G00040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.04168 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G00040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.33222 x 10-1 | 4 | 2 | 6 | 6 | 66.67% | 50.00% | 6 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.63191' Avg. expression score for this sample: '63.2405' Avg. expression score in LCM sample: '34.4813' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G00040 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 0 | 0 | 66.67% | 6 | 0 | TAIR8 |
Avg. embryo expression (dissected): '55.6245' Avg. embryo expression (LCM): '35.905' |
|||||
| AT4G00040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.3637 x 10-1 | 12 | 3 | 80.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G00030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.41667 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G00030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '77.5605' Avg. embryo expression (LCM): '74.8994' |
|||||
| AT4G00030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 1 | 2 | 0 | 83.33% | 0.00% | 6 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '85.9089' Avg. expression score in LCM sample: '24.4573' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G00030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G00030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 0 | 1 | 0 | 100.00% | 0.00% | 5 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '99.7297' Avg. expression score in LCM sample: '24.4573' Tissue used: 'full endosperm' |
|||||
| AT4G00030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.30444 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G00026 | SD3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-21 | 345 | 26 | 92.99% | 371 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G00026 | SD3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.56614 x 10-1 | 37 | 20 | 64.91% | 57 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G00026 | SD3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.78925 x 10-1 | 105 | 45 | 82 | 158 | 70.00% | 65.83% | 150 | 240 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.656536' Avg. expression score for this sample: '129.002' Avg. expression score in LCM sample: '26.7208' Tissue used: 'full endosperm' |
||||
| AT4G00026 | SD3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.45128 x 10-1 | 61 | 32 | 21 | 59 | 65.59% | 73.75% | 93 | 80 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.656536' Avg. expression score for this sample: '85.8515' Avg. expression score in LCM sample: '26.7208' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G00026 | SD3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.19421 x 10-1 | 162 | 181 | 31 | 21 | 47.23% | 40.38% | 343 | 52 | TAIR8 |
Avg. embryo expression (dissected): '258.652' Avg. embryo expression (LCM): '355.558' |
|||
| AT4G00026 | SD3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.19 x 10-4 | 340 | 98 | 77.63% | 438 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G00020 | BRCA2(IV) | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 3 | 62.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G00020 | BRCA2(IV) | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '77.7257' Avg. embryo expression (LCM): '87.9979' |
|||
| AT4G00020 | BRCA2(IV) | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 2 | 0 | 1 | 33.33% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '28.7485' Avg. expression score in LCM sample: '26.7355' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G00020 | BRCA2(IV) | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 1 | 3 | 75.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '17.8614' Avg. expression score in LCM sample: '26.7355' Tissue used: 'full endosperm' |
|||||
| AT4G00020 | BRCA2(IV) | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G00020 | BRCA2(IV) | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G66658 | ALDH22A1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.57462 x 10-1 | 26 | 21 | 55.32% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G66658 | ALDH22A1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.44554 x 10-1 | 116 | 50 | 105 | 142 | 69.88% | 57.49% | 166 | 247 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.732306' Avg. expression score for this sample: '53.8076' Avg. expression score in LCM sample: '70.7117' Tissue used: 'full endosperm' |
||||
| AT3G66658 | ALDH22A1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.4 x 10-23 | 199 | 7 | 96.60% | 206 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G66658 | ALDH22A1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.07445 x 10-1 | 106 | 30 | 51 | 87 | 77.94% | 63.04% | 136 | 138 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.732306' Avg. expression score for this sample: '52.0232' Avg. expression score in LCM sample: '70.7117' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G66658 | ALDH22A1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.41919 x 10-1 | 68 | 69 | 18 | 11 | 49.64% | 37.93% | 137 | 29 | TAIR8 |
Avg. embryo expression (dissected): '43.4866' Avg. embryo expression (LCM): '53.9642' |
|||
| AT3G66658 | ALDH22A1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 88 | 14 | 86.27% | 102 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G66656 | AGL91 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G66656 | AGL91 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT3G66656 | AGL91 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT3G66656 | AGL91 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G66656 | AGL91 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G66656 | AGL91 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.675104' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT3G66654 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '40.4683' Avg. expression score in LCM sample: '35.0545' Tissue used: 'full endosperm' |
|||||||
| AT3G66654 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G66654 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G66654 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '17.0267' Avg. expression score in LCM sample: '35.0545' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT3G66654 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '22.2546' Avg. embryo expression (LCM): '10.7878' |
||||||
| AT3G66654 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G66652 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.43656 x 10-1 | 110 | 46 | 70.51% | 156 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G66652 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.96107 x 10-1 | 15 | 8 | 5 | 2 | 65.22% | 28.57% | 23 | 7 | TAIR8 |
Avg. embryo expression (dissected): '125.302' Avg. embryo expression (LCM): '104.337' |
||||
| AT3G66652 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 2 | 3 | 5 | 80.00% | 62.50% | 10 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '57.0234' Avg. expression score in LCM sample: '20.0186' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G66652 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.27869 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G66652 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 12 | 9 | 5 | 16 | 57.14% | 76.19% | 21 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '73.8151' Avg. expression score in LCM sample: '20.0186' Tissue used: 'full endosperm' |
|||||
| AT3G66652 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.3297 x 10-2 | 63 | 11 | 85.14% | 74 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63530 | BB | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 2 | 71.43% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63530 | BB | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.95349 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63530 | BB | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.34478 x 10-1 | 10 | 4 | 10 | 7 | 71.43% | 41.18% | 14 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.820119' Avg. expression score for this sample: '61.2389' Avg. expression score in LCM sample: '15.4034' Tissue used: 'full endosperm' |
||||
| AT3G63530 | BB | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.35117 x 10-1 | 6 | 0 | 2 | 3 | 100.00% | 60.00% | 6 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.820119' Avg. expression score for this sample: '46.8816' Avg. expression score in LCM sample: '15.4034' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT3G63530 | BB | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '40.9404' Avg. embryo expression (LCM): '30.3541' |
|||
| AT3G63530 | BB | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.42213 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63520 | CCD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.97 x 10-4 | 719 | 189 | 79.19% | 908 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63520 | CCD1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.9579 x 10-1 | 81 | 101 | 34 | 40 | 44.51% | 54.05% | 182 | 74 | TAIR8 |
Avg. embryo expression (dissected): '432.184' Avg. embryo expression (LCM): '234.695' |
|||
| AT3G63520 | CCD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.92035 x 10-1 | 121 | 51 | 64 | 145 | 70.35% | 69.38% | 172 | 209 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000465' Avg. expression score for this sample: '356.852' Avg. expression score in LCM sample: '185.546' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G63520 | CCD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.22 x 10-4 | 332 | 130 | 155 | 462 | 71.86% | 74.88% | 462 | 617 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000465' Avg. expression score for this sample: '594.478' Avg. expression score in LCM sample: '185.546' Tissue used: 'full endosperm' |
||||
| AT3G63520 | CCD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.1123 x 10-2 | 463 | 138 | 77.04% | 601 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63520 | CCD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.94072 x 10-1 | 58 | 19 | 75.32% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '61.7087' Avg. expression score in LCM sample: '36.5831' Tissue used: 'full endosperm' |
||||||
| AT3G63510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '129.796' Avg. expression score in LCM sample: '36.5831' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT3G63510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 0 | 1 | 0 | 100.00% | 0.00% | 3 | 1 | TAIR8 |
Avg. embryo expression (dissected): '441.84' Avg. embryo expression (LCM): '216.975' |
||||
| AT3G63510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63500 | TTA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.45908 x 10-1 | 687 | 232 | 74.76% | 919 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63500 | TTA2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.88374 x 10-1 | 151 | 134 | 72 | 49 | 52.98% | 40.50% | 285 | 121 | TAIR8 |
Avg. embryo expression (dissected): '755.25' Avg. embryo expression (LCM): '447.763' |
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| AT3G63500 | TTA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.23785 x 10-1 | 482 | 190 | 186 | 356 | 71.73% | 65.68% | 672 | 542 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.1e-09' Avg. expression score for this sample: '1102.72' Avg. expression score in LCM sample: '208.784' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G63500 | TTA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-24 | 1073 | 152 | 87.59% | 1225 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63500 | TTA2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.6367 x 10-2 | 155 | 35 | 81.58% | 190 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63500 | TTA2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.7 x 10-11 | 672 | 196 | 188 | 619 | 77.42% | 76.70% | 868 | 807 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '6.1e-09' Avg. expression score for this sample: '846.975' Avg. expression score in LCM sample: '208.784' Tissue used: 'full endosperm' |
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| AT3G63490 | EMB3126 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.7244 x 10-2 | 13 | 19 | 9 | 11 | 40.62% | 55.00% | 32 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.14951' Avg. expression score for this sample: '281.189' Avg. expression score in LCM sample: '88.0846' Tissue used: 'full endosperm' |
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| AT3G63490 | EMB3126 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.27131 x 10-1 | 8 | 3 | 72.73% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63490 | EMB3126 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.31129 x 10-1 | 5 | 6 | 45.45% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63490 | EMB3126 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.79304 x 10-1 | 40 | 21 | 13 | 22 | 65.57% | 62.86% | 61 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.14951' Avg. expression score for this sample: '264.31' Avg. expression score in LCM sample: '88.0846' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G63490 | EMB3126 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.2056 x 10-2 | 64 | 35 | 17 | 22 | 64.65% | 56.41% | 99 | 39 | TAIR8 |
Avg. embryo expression (dissected): '827.521' Avg. embryo expression (LCM): '755.26' |
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| AT3G63490 | EMB3126 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.36686 x 10-1 | 6 | 3 | 66.67% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.3672 x 10-2 | 55 | 20 | 73.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.00105 x 10-1 | 15 | 8 | 1 | 2 | 65.22% | 66.67% | 23 | 3 | TAIR8 |
Avg. embryo expression (dissected): '23.8188' Avg. embryo expression (LCM): '18.8253' |
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| AT3G63480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.00623 x 10-1 | 20 | 12 | 6 | 4 | 62.50% | 40.00% | 32 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.333794' Avg. expression score for this sample: '22.7326' Avg. expression score in LCM sample: '10.5678' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G63480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.22213 x 10-1 | 8 | 8 | 18 | 35 | 50.00% | 66.04% | 16 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.333794' Avg. expression score for this sample: '21.6122' Avg. expression score in LCM sample: '10.5678' Tissue used: 'full endosperm' |
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| AT3G63480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.49239 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.022 x 10-3 | 29 | 4 | 87.88% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63470 | scpl40 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.6641 x 10-2 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63470 | scpl40 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63470 | scpl40 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.77713 x 10-1 | 6 | 5 | 2 | 1 | 54.55% | 33.33% | 11 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.64576' Avg. expression score in LCM sample: '4.9238' Tissue used: 'full endosperm' |
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| AT3G63470 | scpl40 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.1 | 2 | 0 | 0 | 6 | 100.00% | 100.00% | 2 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '15.606' Avg. expression score in LCM sample: '4.9238' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G63470 | scpl40 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT3G63470 | scpl40 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 3 | 1 | 0 | 40.00% | 0.00% | 5 | 1 | TAIR8 |
Avg. embryo expression (dissected): '32.5328' Avg. embryo expression (LCM): '11.2148' |
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| AT3G63460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.50092 x 10-1 | 200 | 149 | 83 | 79 | 57.31% | 48.77% | 349 | 162 | TAIR8 |
Avg. embryo expression (dissected): '514.055' Avg. embryo expression (LCM): '331.911' |
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| AT3G63460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.15538 x 10-1 | 541 | 187 | 74.31% | 728 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.26 x 10-4 | 243 | 80 | 94 | 275 | 75.23% | 74.53% | 323 | 369 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000045' Avg. expression score for this sample: '389.476' Avg. expression score in LCM sample: '316.549' Tissue used: 'full endosperm' |
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| AT3G63460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.1115 x 10-2 | 183 | 67 | 89 | 241 | 73.20% | 73.03% | 250 | 330 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000045' Avg. expression score for this sample: '426.887' Avg. expression score in LCM sample: '316.549' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G63460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.66184 x 10-1 | 47 | 19 | 71.21% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-7 | 643 | 126 | 83.62% | 769 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63450 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT3G63450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT3G63450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '30.546' Avg. expression score in LCM sample: '3.80676' Tissue used: 'pure endosperm, no chalazal' |
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| AT3G63450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 1 | 2 | 66.67% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.6966' Avg. expression score in LCM sample: '3.80676' Tissue used: 'full endosperm' |