| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G58375 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.37986 x 10-1 | 6 | 10 | 1 | 1 | 37.50% | 50.00% | 16 | 2 | TAIR8 |
Avg. embryo expression (dissected): '267.355' Avg. embryo expression (LCM): '78.4911' |
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| AT5G58375 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.19435 x 10-1 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58375 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.1185 x 10-2 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58375 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.1102 x 10-2 | 29 | 3 | 90.62% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.14947 x 10-1 | 19 | 9 | 6 | 6 | 67.86% | 50.00% | 28 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.197568' Avg. expression score for this sample: '35.8678' Avg. expression score in LCM sample: '21.5324' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.9709 x 10-2 | 23 | 9 | 22 | 80 | 71.88% | 78.43% | 32 | 102 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.197568' Avg. expression score for this sample: '74.9249' Avg. expression score in LCM sample: '21.5324' Tissue used: 'full endosperm' |
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| AT5G58370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 36 | 42 | 7 | 11 | 46.15% | 61.11% | 78 | 18 | TAIR8 |
Avg. embryo expression (dissected): '114.051' Avg. embryo expression (LCM): '237.131' |
||||
| AT5G58370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.00635 x 10-1 | 11 | 1 | 91.67% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.07998 x 10-1 | 65 | 15 | 81.25% | 80 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.73876 x 10-1 | 84 | 25 | 77.06% | 109 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58360 | OFP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58360 | OFP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.563357' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G58360 | OFP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT5G58360 | OFP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58360 | OFP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58360 | OFP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58350 | WNK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 11 | 3 | 8 | 14 | 78.57% | 63.64% | 14 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.886064' Avg. expression score for this sample: '16.1643' Avg. expression score in LCM sample: '5.20306' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58350 | WNK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 36 | 21 | 3 | 15 | 63.16% | 83.33% | 57 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.886064' Avg. expression score for this sample: '25.2321' Avg. expression score in LCM sample: '5.20306' Tissue used: 'full endosperm' |
||||
| AT5G58350 | WNK4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.80172 x 10-1 | 0 | 6 | 2 | 4 | 0.00% | 66.67% | 6 | 6 | TAIR8 |
Avg. embryo expression (dissected): '11.0333' Avg. embryo expression (LCM): '2.96382' |
|||
| AT5G58350 | WNK4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.847 x 10-3 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58350 | WNK4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.5998 x 10-2 | 17 | 2 | 89.47% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58350 | WNK4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.2 x 10-6 | 50 | 1 | 98.04% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.40782 x 10-1 | 462 | 278 | 268 | 620 | 62.43% | 69.82% | 740 | 888 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.154541' Avg. expression score for this sample: '832.006' Avg. expression score in LCM sample: '382.396' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58340 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.9908 x 10-2 | 657 | 269 | 223 | 503 | 70.95% | 69.28% | 926 | 726 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.154541' Avg. expression score for this sample: '518.857' Avg. expression score in LCM sample: '382.396' Tissue used: 'full endosperm' |
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| AT5G58340 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.37531 x 10-1 | 255 | 289 | 96 | 121 | 46.88% | 55.76% | 544 | 217 | TAIR8 |
Avg. embryo expression (dissected): '691.894' Avg. embryo expression (LCM): '267.121' |
||||
| AT5G58340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.566 x 10-3 | 137 | 38 | 78.29% | 175 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58340 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.76 x 10-4 | 550 | 183 | 75.03% | 733 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58340 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.7 x 10-23 | 630 | 105 | 85.71% | 735 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 4 | 2 | 6 | 50.00% | 75.00% | 8 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.902067' Avg. expression score for this sample: '95.3747' Avg. expression score in LCM sample: '47.9593' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.94252 x 10-1 | 26 | 12 | 30 | 66 | 68.42% | 68.75% | 38 | 96 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.902067' Avg. expression score for this sample: '102.624' Avg. expression score in LCM sample: '47.9593' Tissue used: 'full endosperm' |
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| AT5G58330 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 10 | 0 | 3 | 44.44% | 100.00% | 18 | 3 | TAIR8 |
Avg. embryo expression (dissected): '279.731' Avg. embryo expression (LCM): '204.918' |
||||
| AT5G58330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.5444 x 10-1 | 9 | 3 | 75.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.8865 x 10-2 | 129 | 34 | 79.14% | 163 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58330 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.1824 x 10-2 | 64 | 17 | 79.01% | 81 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58320 | NET4A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.91698 x 10-1 | 135 | 69 | 45 | 147 | 66.18% | 76.56% | 204 | 192 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.1e-11' Avg. expression score for this sample: '59.6882' Avg. expression score in LCM sample: '8.34842' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58320 | NET4A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.8 x 10-12 | 449 | 114 | 136 | 507 | 79.75% | 78.85% | 563 | 643 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.1e-11' Avg. expression score for this sample: '129.871' Avg. expression score in LCM sample: '8.34842' Tissue used: 'full endosperm' |
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| AT5G58320 | NET4A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.5846 x 10-2 | 12 | 1 | 3 | 3 | 92.31% | 50.00% | 13 | 6 | TAIR8 |
Avg. embryo expression (dissected): '5.24368' Avg. embryo expression (LCM): '3.24011' |
|||
| AT5G58320 | NET4A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.27969 x 10-1 | 107 | 23 | 82.31% | 130 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58320 | NET4A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.7 x 10-17 | 296 | 13 | 95.79% | 309 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58320 | NET4A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 815 | 42 | 95.10% | 857 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58310 | MES18 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.66165' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58310 | MES18 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.5158' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G58310 | MES18 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 1 | 0 | 1 | 50.00% | 100.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '43.2615' Avg. embryo expression (LCM): '12.5335' |
|||
| AT5G58310 | MES18 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58310 | MES18 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58310 | MES18 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58300 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.592075' Avg. expression score for this sample: '31.5202' Avg. expression score in LCM sample: '11.7142' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58300 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.5671 | 0 | 3 | 1 | 2 | 0.00% | 66.67% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.592075' Avg. expression score for this sample: '38.5753' Avg. expression score in LCM sample: '11.7142' Tissue used: 'full endosperm' |
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| AT5G58300 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.40071 x 10-1 | 1 | 10 | 0 | 3 | 9.09% | 100.00% | 11 | 3 | TAIR8 |
Avg. embryo expression (dissected): '238.675' Avg. embryo expression (LCM): '121.165' |
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| AT5G58300 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G58300 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.65734 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58300 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.2 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58290 | RPT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '178.439' Avg. expression score in LCM sample: '148.126' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58290 | RPT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '200.632' Avg. expression score in LCM sample: '148.126' Tissue used: 'full endosperm' |
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| AT5G58290 | RPT3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '171.184' Avg. embryo expression (LCM): '226.996' |
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| AT5G58290 | RPT3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58290 | RPT3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58290 | RPT3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 14 | 5 | 3 | 6 | 73.68% | 66.67% | 19 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.635353' Avg. expression score for this sample: '19.2785' Avg. expression score in LCM sample: '1.80784' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.81659 x 10-1 | 0 | 2 | 1 | 12 | 0.00% | 92.31% | 2 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.635353' Avg. expression score for this sample: '8.83896' Avg. expression score in LCM sample: '1.80784' Tissue used: 'full endosperm' |
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| AT5G58280 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.69719 x 10-1 | 37 | 50 | 4 | 5 | 42.53% | 55.56% | 87 | 9 | TAIR8 |
Avg. embryo expression (dissected): '113.479' Avg. embryo expression (LCM): '72.3374' |
||||
| AT5G58280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.14837 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8617 x 10-2 | 11 | 14 | 44.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58280 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.34 x 10-3 | 2 | 8 | 20.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58270 | ABCB25 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.68582 x 10-1 | 5 | 1 | 0 | 9 | 83.33% | 100.00% | 6 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.162202' Avg. expression score for this sample: '114.34' Avg. expression score in LCM sample: '42.624' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58270 | ABCB25 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.87368 x 10-1 | 4 | 6 | 2 | 21 | 40.00% | 91.30% | 10 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.162202' Avg. expression score for this sample: '111.15' Avg. expression score in LCM sample: '42.624' Tissue used: 'full endosperm' |
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| AT5G58270 | ABCB25 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.49917 x 10-1 | 3 | 6 | 1 | 0 | 33.33% | 0.00% | 9 | 1 | TAIR8 |
Avg. embryo expression (dissected): '148.602' Avg. embryo expression (LCM): '79.7972' |
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| AT5G58270 | ABCB25 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.84574 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58270 | ABCB25 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.99229 x 10-1 | 34 | 9 | 79.07% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58270 | ABCB25 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.72531 x 10-1 | 19 | 10 | 65.52% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58260 | NdhN | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.97073' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58260 | NdhN | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 2 | 1 | 100.00% | 33.33% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.28101' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G58260 | NdhN | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '19.8778' Avg. embryo expression (LCM): '22.4296' |
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| AT5G58260 | NdhN | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58260 | NdhN | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58260 | NdhN | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.81818 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58250 | EMB3143 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.51482 x 10-1 | 114 | 79 | 54 | 94 | 59.07% | 63.51% | 193 | 148 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.027163' Avg. expression score for this sample: '324.819' Avg. expression score in LCM sample: '114.776' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58250 | EMB3143 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.26458 x 10-1 | 128 | 80 | 39 | 52 | 61.54% | 57.14% | 208 | 91 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.027163' Avg. expression score for this sample: '278.512' Avg. expression score in LCM sample: '114.776' Tissue used: 'full endosperm' |
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| AT5G58250 | EMB3143 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.88864 x 10-1 | 391 | 321 | 159 | 115 | 54.92% | 41.97% | 712 | 274 | TAIR8 |
Avg. embryo expression (dissected): '1611.98' Avg. embryo expression (LCM): '954.339' |
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| AT5G58250 | EMB3143 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.03851 x 10-1 | 45 | 18 | 71.43% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58250 | EMB3143 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.24245 x 10-1 | 14 | 14 | 50.00% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58250 | EMB3143 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.922 x 10-3 | 36 | 7 | 83.72% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58240 | FHIT | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '150.979' Avg. expression score in LCM sample: '48.8118' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58240 | FHIT | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '204.917' Avg. expression score in LCM sample: '48.8118' Tissue used: 'full endosperm' |
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| AT5G58240 | FHIT | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '206.571' Avg. embryo expression (LCM): '151.381' |
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| AT5G58240 | FHIT | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58240 | FHIT | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58240 | FHIT | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58230 | MSI1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '151.314' Avg. expression score in LCM sample: '129.738' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58230 | MSI1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '159.286' Avg. expression score in LCM sample: '129.738' Tissue used: 'full endosperm' |
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| AT5G58230 | MSI1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '189.575' Avg. embryo expression (LCM): '215.518' |
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| AT5G58230 | MSI1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58230 | MSI1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58230 | MSI1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G58220 | TTL | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 12 | 8 | 9 | 24 | 60.00% | 72.73% | 20 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.724057' Avg. expression score for this sample: '311.769' Avg. expression score in LCM sample: '82.4406' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G58220 | TTL | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.72028 x 10-1 | 37 | 12 | 22 | 42 | 75.51% | 65.62% | 49 | 64 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.724057' Avg. expression score for this sample: '199.308' Avg. expression score in LCM sample: '82.4406' Tissue used: 'full endosperm' |
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| AT5G58220 | TTL | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0085 x 10-1 | 20 | 12 | 4 | 13 | 62.50% | 76.47% | 32 | 17 | TAIR8 |
Avg. embryo expression (dissected): '367.437' Avg. embryo expression (LCM): '138.684' |
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| AT5G58220 | TTL | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.2245 x 10-2 | 13 | 13 | 50.00% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58220 | TTL | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.941 x 10-3 | 72 | 11 | 86.75% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G58220 | TTL | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-6 | 96 | 7 | 93.20% | 103 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |