| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G02800 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.45629 x 10-1 | 41 | 25 | 62.12% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 67 | 31 | 68.37% | 98 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02790 | EMB3129 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.7793 x 10-2 | 34 | 6 | 85.00% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02790 | EMB3129 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0028 x 10-2 | 88 | 21 | 80.73% | 109 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02790 | EMB3129 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.06596 x 10-1 | 82 | 46 | 64.06% | 128 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02790 | EMB3129 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.80297 x 10-1 | 41 | 35 | 33 | 118 | 53.95% | 78.15% | 76 | 151 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.865847' Avg. expression score for this sample: '31.7303' Avg. expression score in LCM sample: '13.8748' Tissue used: 'full endosperm' |
||||
| AT4G02790 | EMB3129 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.837 x 10-3 | 58 | 141 | 16 | 29 | 29.15% | 64.44% | 199 | 45 | TAIR8 |
Avg. embryo expression (dissected): '109.139' Avg. embryo expression (LCM): '88.4626' |
|||
| AT4G02790 | EMB3129 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.34955 x 10-1 | 21 | 26 | 9 | 34 | 44.68% | 79.07% | 47 | 43 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.865847' Avg. expression score for this sample: '24.7315' Avg. expression score in LCM sample: '13.8748' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G02780 | GA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.2236 x 10-2 | 22 | 29 | 31 | 48 | 43.14% | 60.76% | 51 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.087206' Avg. expression score for this sample: '29.811' Avg. expression score in LCM sample: '3.45401' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G02780 | GA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0 x 10-10 | 901 | 253 | 78.08% | 1154 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02780 | GA1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.22 x 10-4 | 21 | 1 | 95.45% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02780 | GA1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.82721 x 10-1 | 36 | 32 | 52.94% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02780 | GA1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.37688 x 10-1 | 10 | 3 | 3 | 2 | 76.92% | 40.00% | 13 | 5 | TAIR8 |
Avg. embryo expression (dissected): '9.30603' Avg. embryo expression (LCM): '11.3027' |
|||
| AT4G02780 | GA1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.70368 x 10-1 | 19 | 51 | 19 | 106 | 27.14% | 84.80% | 70 | 125 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.087206' Avg. expression score for this sample: '34.0438' Avg. expression score in LCM sample: '3.45401' Tissue used: 'full endosperm' |
||||
| AT4G02770 | PSAD-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.4156 x 10-2 | 1518 | 806 | 1172 | 2069 | 65.32% | 63.84% | 2324 | 3241 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000461' Avg. expression score for this sample: '1852.8' Avg. expression score in LCM sample: '593.913' Tissue used: 'full endosperm' |
||||
| AT4G02770 | PSAD-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.06158 x 10-1 | 2627 | 2334 | 611 | 496 | 52.95% | 44.81% | 4961 | 1107 | TAIR8 |
Avg. embryo expression (dissected): '4140.32' Avg. embryo expression (LCM): '2299.4' |
|||
| AT4G02770 | PSAD-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.138 x 10-2 | 1794 | 884 | 724 | 1079 | 66.99% | 59.84% | 2678 | 1803 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000461' Avg. expression score for this sample: '2103.59' Avg. expression score in LCM sample: '593.913' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G02770 | PSAD-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.19 x 10-4 | 157 | 135 | 53.77% | 292 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02770 | PSAD-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.5206 x 10-2 | 370 | 172 | 68.27% | 542 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02770 | PSAD-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.01468 x 10-1 | 329 | 198 | 62.43% | 527 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 2 | 77.78% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.9 x 10-5 | 87 | 6 | 93.55% | 93 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.2 x 10-9 | 191 | 11 | 94.55% | 202 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02760 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 17 | 10 | 5 | 0 | 62.96% | 0.00% | 27 | 5 | TAIR8 |
Avg. embryo expression (dissected): '27.771' Avg. embryo expression (LCM): '4.88529' |
||||
| AT4G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.9231 x 10-2 | 79 | 27 | 15 | 52 | 74.53% | 77.61% | 106 | 67 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.134579' Avg. expression score for this sample: '50.8222' Avg. expression score in LCM sample: '20.0186' Tissue used: 'full endosperm' |
|||||
| AT4G02760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 16 | 4 | 9 | 7 | 80.00% | 43.75% | 20 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.134579' Avg. expression score for this sample: '40.8587' Avg. expression score in LCM sample: '20.0186' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 19 | 3 | 11 | 10 | 86.36% | 47.62% | 22 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.550638' Avg. expression score for this sample: '41.565' Avg. expression score in LCM sample: '19.4306' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.32 x 10-3 | 57 | 7 | 89.06% | 64 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.13228 x 10-1 | 18 | 8 | 69.23% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.32657 x 10-1 | 23 | 10 | 6 | 23 | 69.70% | 79.31% | 33 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.550638' Avg. expression score for this sample: '61.4519' Avg. expression score in LCM sample: '19.4306' Tissue used: 'full endosperm' |
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| AT4G02750 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.88133 x 10-1 | 48 | 35 | 14 | 4 | 57.83% | 22.22% | 83 | 18 | TAIR8 |
Avg. embryo expression (dissected): '165.011' Avg. embryo expression (LCM): '114.07' |
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| AT4G02740 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.66 x 10-3 | 236 | 129 | 47 | 20 | 64.66% | 29.85% | 365 | 67 | TAIR8 |
Avg. embryo expression (dissected): '144.485' Avg. embryo expression (LCM): '72.2746' |
||||
| AT4G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.2 x 10-9 | 222 | 54 | 81 | 337 | 80.43% | 80.62% | 276 | 418 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000917' Avg. expression score for this sample: '125.6' Avg. expression score in LCM sample: '42.7415' Tissue used: 'full endosperm' |
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| AT4G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.94619 x 10-1 | 376 | 85 | 233 | 234 | 81.56% | 50.11% | 461 | 467 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000917' Avg. expression score for this sample: '213.297' Avg. expression score in LCM sample: '42.7415' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.98356 x 10-1 | 381 | 154 | 71.21% | 535 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-12 | 393 | 56 | 87.53% | 449 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02740 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.557 x 10-3 | 46 | 5 | 90.20% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02733 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G02733 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.3 x 10-6 | 442 | 208 | 68.00% | 650 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02733 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.78415 x 10-1 | 53 | 175 | 23.25% | 228 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02733 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.775 x 10-3 | 2 | 6 | 7 | 0 | 25.00% | 0.00% | 8 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003056' Avg. expression score for this sample: '2.74353' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G02733 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G02733 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.2381 x 10-1 | 0 | 1 | 3 | 1 | 0.00% | 25.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003056' Avg. expression score for this sample: '1.36104' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02730 | WDR5b | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.71684 x 10-1 | 8 | 11 | 8 | 15 | 42.11% | 65.22% | 19 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.054941' Avg. expression score for this sample: '90.2425' Avg. expression score in LCM sample: '91.3475' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02730 | WDR5b | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5033 x 10-2 | 49 | 17 | 74.24% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02730 | WDR5b | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.8793 x 10-2 | 16 | 4 | 80.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02730 | WDR5b | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.3 x 10-10 | 166 | 30 | 84.69% | 196 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02730 | WDR5b | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.31799 x 10-1 | 9 | 17 | 7 | 3 | 34.62% | 30.00% | 26 | 10 | TAIR8 |
Avg. embryo expression (dissected): '85.2558' Avg. embryo expression (LCM): '85.0592' |
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| AT4G02730 | WDR5b | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.10991 x 10-1 | 24 | 23 | 56 | 86 | 51.06% | 60.56% | 47 | 142 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.054941' Avg. expression score for this sample: '120.767' Avg. expression score in LCM sample: '91.3475' Tissue used: 'full endosperm' |
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| AT4G02725 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.38682 x 10-1 | 71 | 19 | 55 | 109 | 78.89% | 66.46% | 90 | 164 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.731568' Avg. expression score for this sample: '79.5582' Avg. expression score in LCM sample: '29.7339' Tissue used: 'full endosperm' |
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| AT4G02725 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.3431 x 10-2 | 157 | 86 | 45 | 21 | 64.61% | 31.82% | 243 | 66 | TAIR8 |
Avg. embryo expression (dissected): '160.567' Avg. embryo expression (LCM): '68.9591' |
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| AT4G02725 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.1361 x 10-1 | 90 | 38 | 52 | 39 | 70.31% | 42.86% | 128 | 91 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.731568' Avg. expression score for this sample: '78.7339' Avg. expression score in LCM sample: '29.7339' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02725 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.91 x 10-4 | 58 | 9 | 86.57% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02725 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3 x 10-10 | 123 | 12 | 91.11% | 135 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02725 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.58232 x 10-1 | 18 | 15 | 54.55% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.48377 x 10-1 | 251 | 97 | 72.13% | 348 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.29505 x 10-1 | 2513 | 1073 | 70.08% | 3586 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02720 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3092 | 392 | 88.75% | 3484 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02720 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.29873 x 10-1 | 841 | 734 | 222 | 213 | 53.40% | 48.97% | 1575 | 435 | TAIR8 |
Avg. embryo expression (dissected): '1072.7' Avg. embryo expression (LCM): '769.74' |
||||
| AT4G02720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 x 10-10 | 1843 | 472 | 857 | 1698 | 79.61% | 66.46% | 2315 | 2555 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.0e-07' Avg. expression score for this sample: '990.829' Avg. expression score in LCM sample: '288.696' Tissue used: 'full endosperm' |
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| AT4G02720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.8368 x 10-1 | 1223 | 501 | 584 | 1012 | 70.94% | 63.41% | 1724 | 1596 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.0e-07' Avg. expression score for this sample: '1055.65' Avg. expression score in LCM sample: '288.696' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02715 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.61177 x 10-1 | 29 | 8 | 15 | 23 | 78.38% | 60.53% | 37 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.429763' Avg. expression score for this sample: '40.2141' Avg. expression score in LCM sample: '64.3181' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G02715 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 332 | 2 | 99.40% | 334 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02715 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.95502 x 10-1 | 15 | 9 | 62.50% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02715 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.09207 x 10-1 | 62 | 22 | 73.81% | 84 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02715 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.79088 x 10-1 | 127 | 22 | 67 | 79 | 85.23% | 54.11% | 149 | 146 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.429763' Avg. expression score for this sample: '91.4755' Avg. expression score in LCM sample: '64.3181' Tissue used: 'full endosperm' |
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| AT4G02715 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.50126 x 10-1 | 19 | 19 | 11 | 7 | 50.00% | 38.89% | 38 | 18 | TAIR8 |
Avg. embryo expression (dissected): '44.3035' Avg. embryo expression (LCM): '50.8874' |
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| AT4G02710 | NET1C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.3137 x 10-2 | 200 | 129 | 67 | 55 | 60.79% | 45.08% | 329 | 122 | TAIR8 |
Avg. embryo expression (dissected): '101.068' Avg. embryo expression (LCM): '82.5224' |
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| AT4G02710 | NET1C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.7 x 10-20 | 473 | 101 | 188 | 773 | 82.40% | 80.44% | 574 | 961 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.5e-12' Avg. expression score for this sample: '140.469' Avg. expression score in LCM sample: '98.3438' Tissue used: 'full endosperm' |
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| AT4G02710 | NET1C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.6171 x 10-1 | 232 | 110 | 120 | 169 | 67.84% | 58.48% | 342 | 289 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '8.5e-12' Avg. expression score for this sample: '87.404' Avg. expression score in LCM sample: '98.3438' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02710 | NET1C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.0 x 10-11 | 13026 | 5744 | 69.40% | 18770 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02710 | NET1C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3223 | 2170 | 59.76% | 5393 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02710 | NET1C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-6 | 123 | 10 | 92.48% | 133 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02700 | SULTR3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02700 | SULTR3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02700 | SULTR3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.6075 x 10-2 | 7 | 2 | 77.78% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02700 | SULTR3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.85714 x 10-1 | 0 | 0 | 3 | 1 | 25.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.128346' Avg. expression score for this sample: '2.00317' Avg. expression score in LCM sample: '6.40829' Tissue used: 'full endosperm' |
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| AT4G02700 | SULTR3;2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.21041' Avg. embryo expression (LCM): '2.73777' |
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| AT4G02700 | SULTR3;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.78895 x 10-1 | 3 | 0 | 7 | 0 | 100.00% | 0.00% | 3 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.128346' Avg. expression score for this sample: '2.25335' Avg. expression score in LCM sample: '6.40829' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.98345' Avg. expression score in LCM sample: '2.26348' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02690 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G02690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G02690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.5454 x 10-2 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02690 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.93158' Avg. embryo expression (LCM): '3.86804' |
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| AT4G02690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 1 | 6 | 50.00% | 85.71% | 2 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.48862' Avg. expression score in LCM sample: '2.26348' Tissue used: 'full endosperm' |
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| AT4G02680 | EOL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.571 x 10-2 | 80 | 28 | 46 | 124 | 74.07% | 72.94% | 108 | 170 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.179213' Avg. expression score for this sample: '133.254' Avg. expression score in LCM sample: '62.3633' Tissue used: 'full endosperm' |
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| AT4G02680 | EOL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.83632 x 10-1 | 21 | 36 | 15 | 14 | 36.84% | 48.28% | 57 | 29 | TAIR8 |
Avg. embryo expression (dissected): '99.8668' Avg. embryo expression (LCM): '81.5931' |
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| AT4G02680 | EOL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 22 | 15 | 18 | 42 | 59.46% | 70.00% | 37 | 60 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.179213' Avg. expression score for this sample: '73.8563' Avg. expression score in LCM sample: '62.3633' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02680 | EOL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.4 x 10-11 | 118 | 4 | 96.72% | 122 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02680 | EOL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-13 | 220 | 13 | 94.42% | 233 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02680 | EOL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.07696 x 10-1 | 35 | 8 | 81.40% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02670 | IDD12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02670 | IDD12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02670 | IDD12 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G02670 | IDD12 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.09874' Avg. embryo expression (LCM): '10.4111' |
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| AT4G02670 | IDD12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.554323' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G02670 | IDD12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.428623' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.38749 x 10-1 | 14 | 11 | 14 | 19 | 56.00% | 57.58% | 25 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.556811' Avg. expression score for this sample: '11.9901' Avg. expression score in LCM sample: '20.048' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.69526 x 10-1 | 62 | 17 | 31 | 72 | 78.48% | 69.90% | 79 | 103 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.556811' Avg. expression score for this sample: '14.2024' Avg. expression score in LCM sample: '20.048' Tissue used: 'full endosperm' |