| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G03110 | RBP-DR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.688 x 10-3 | 48 | 2 | 5 | 15 | 96.00% | 75.00% | 50 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001998' Avg. expression score for this sample: '462.919' Avg. expression score in LCM sample: '253.554' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03110 | RBP-DR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.64685 x 10-1 | 32 | 8 | 23 | 63 | 80.00% | 73.26% | 40 | 86 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001998' Avg. expression score for this sample: '377.316' Avg. expression score in LCM sample: '253.554' Tissue used: 'full endosperm' |
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| AT4G03110 | RBP-DR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.41491 x 10-1 | 16 | 15 | 12 | 7 | 51.61% | 36.84% | 31 | 19 | TAIR8 |
Avg. embryo expression (dissected): '371.767' Avg. embryo expression (LCM): '318.222' |
|||
| AT4G03110 | RBP-DR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.39042 x 10-1 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03100 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.2446 x 10-2 | 6 | 10 | 37.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03100 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.51094 x 10-1 | 8 | 3 | 72.73% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03100 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.0739 x 10-2 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03100 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.84232 x 10-1 | 189 | 145 | 36 | 23 | 56.59% | 38.98% | 334 | 59 | TAIR8 |
Avg. embryo expression (dissected): '248.426' Avg. embryo expression (LCM): '314.153' |
||||
| AT4G03100 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.62015 x 10-1 | 69 | 23 | 28 | 58 | 75.00% | 67.44% | 92 | 86 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.401636' Avg. expression score for this sample: '63.6442' Avg. expression score in LCM sample: '60.9817' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G03100 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.252 x 10-3 | 16 | 7 | 36 | 15 | 69.57% | 29.41% | 23 | 51 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.401636' Avg. expression score for this sample: '32.6444' Avg. expression score in LCM sample: '60.9817' Tissue used: 'full endosperm' |
|||||
| AT4G03090 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.1 x 10-6 | 875 | 261 | 405 | 889 | 77.02% | 68.70% | 1136 | 1294 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.4e-12' Avg. expression score for this sample: '213.056' Avg. expression score in LCM sample: '118.171' Tissue used: 'full endosperm' |
|||||
| AT4G03090 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.46115 x 10-1 | 926 | 834 | 243 | 192 | 52.61% | 44.14% | 1760 | 435 | TAIR8 |
Avg. embryo expression (dissected): '373.691' Avg. embryo expression (LCM): '250.908' |
||||
| AT4G03090 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.6 x 10-8 | 923 | 300 | 212 | 570 | 75.47% | 72.89% | 1223 | 782 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '3.4e-12' Avg. expression score for this sample: '219.495' Avg. expression score in LCM sample: '118.171' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G03090 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.3 x 10-13 | 103 | 107 | 49.05% | 210 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03090 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1505 | 155 | 90.66% | 1660 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03090 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.2261 x 10-2 | 633 | 191 | 76.82% | 824 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03080 | BSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.7 x 10-6 | 120 | 8 | 93.75% | 128 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03080 | BSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.6 x 10-8 | 105 | 3 | 97.22% | 108 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03080 | BSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.48473 x 10-1 | 16 | 3 | 6 | 13 | 84.21% | 68.42% | 19 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.214198' Avg. expression score for this sample: '72.7129' Avg. expression score in LCM sample: '75.9147' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03080 | BSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.14314 x 10-1 | 44 | 12 | 29 | 64 | 78.57% | 68.82% | 56 | 93 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.214198' Avg. expression score for this sample: '66.2916' Avg. expression score in LCM sample: '75.9147' Tissue used: 'full endosperm' |
||||
| AT4G03080 | BSL1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 1 | 2 | 0 | 83.33% | 0.00% | 6 | 2 | TAIR8 |
Avg. embryo expression (dissected): '63.4939' Avg. embryo expression (LCM): '44.9346' |
|||
| AT4G03080 | BSL1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.61272 x 10-1 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03070 | AOP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.967 x 10-3 | 23 | 1 | 95.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03070 | AOP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.7947 x 10-2 | 20 | 2 | 90.91% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03070 | AOP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.7 x 10-5 | 36 | 0 | 100.00% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03070 | AOP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 8 | 9 | 2 | 1 | 47.06% | 33.33% | 17 | 3 | TAIR8 |
Avg. embryo expression (dissected): '7.35239' Avg. embryo expression (LCM): '8.33889' |
|||
| AT4G03070 | AOP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 3 | 3 | 8 | 72.73% | 72.73% | 11 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.391454' Avg. expression score for this sample: '6.38342' Avg. expression score in LCM sample: '11.1557' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G03070 | AOP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.06175 x 10-1 | 21 | 22 | 16 | 73 | 48.84% | 82.02% | 43 | 89 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.391454' Avg. expression score for this sample: '23.7529' Avg. expression score in LCM sample: '11.1557' Tissue used: 'full endosperm' |
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| AT4G03060 | AOP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.862591' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G03060 | AOP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '.356223' Avg. embryo expression (LCM): '0' |
|||
| AT4G03060 | AOP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.314619' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G03060 | AOP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03060 | AOP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03060 | AOP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03050 | AOP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.7759 x 10-2 | 11 | 14 | 44.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03050 | AOP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.07154 x 10-1 | 24 | 12 | 66.67% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03050 | AOP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.00404 x 10-1 | 180 | 143 | 96 | 229 | 55.73% | 70.46% | 323 | 325 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.0e-06' Avg. expression score for this sample: '1703.04' Avg. expression score in LCM sample: '151.389' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03050 | AOP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6 x 10-5 | 794 | 481 | 579 | 865 | 62.27% | 59.90% | 1275 | 1444 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.0e-06' Avg. expression score for this sample: '2003.94' Avg. expression score in LCM sample: '151.389' Tissue used: 'full endosperm' |
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| AT4G03050 | AOP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.8784 x 10-2 | 534 | 410 | 184 | 162 | 56.57% | 46.82% | 944 | 346 | TAIR8 |
Avg. embryo expression (dissected): '5016.37' Avg. embryo expression (LCM): '370.013' |
|||
| AT4G03050 | AOP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.0243 x 10-2 | 77 | 72 | 51.68% | 149 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G03040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G03040 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G03040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G03040 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G03040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G03039 | MIR826A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G03039 | MIR826A | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G03039 | MIR826A | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT4G03039 | MIR826A | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03039 | MIR826A | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03039 | MIR826A | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03038 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03038 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G03038 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03038 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.30164' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G03038 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G03038 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G03030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.21026 x 10-1 | 110 | 36 | 75.34% | 146 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.3 x 10-8 | 689 | 128 | 84.33% | 817 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-25 | 792 | 76 | 91.24% | 868 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.70612 x 10-1 | 80 | 82 | 37 | 25 | 49.38% | 40.32% | 162 | 62 | TAIR8 |
Avg. embryo expression (dissected): '829.393' Avg. embryo expression (LCM): '264.345' |
||||
| AT4G03030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.9487 x 10-1 | 169 | 75 | 67 | 163 | 69.26% | 70.87% | 244 | 230 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.4e-07' Avg. expression score for this sample: '1646.58' Avg. expression score in LCM sample: '444.788' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.8 x 10-8 | 364 | 138 | 138 | 538 | 72.51% | 79.59% | 502 | 676 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '4.4e-07' Avg. expression score for this sample: '1668.88' Avg. expression score in LCM sample: '444.788' Tissue used: 'full endosperm' |
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| AT4G03020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.2665 x 10-2 | 309 | 91 | 156 | 319 | 77.25% | 67.16% | 400 | 475 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.127494' Avg. expression score for this sample: '408.548' Avg. expression score in LCM sample: '133.957' Tissue used: 'full endosperm' |
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| AT4G03020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.52024 x 10-1 | 77 | 44 | 25 | 20 | 63.64% | 44.44% | 121 | 45 | TAIR8 |
Avg. embryo expression (dissected): '206.81' Avg. embryo expression (LCM): '136.462' |
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| AT4G03020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.18902 x 10-1 | 113 | 58 | 64 | 105 | 66.08% | 62.13% | 171 | 169 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.127494' Avg. expression score for this sample: '254.902' Avg. expression score in LCM sample: '133.957' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.40174 x 10-1 | 49 | 26 | 65.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 518 | 29 | 94.70% | 547 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.4 x 10-14 | 252 | 28 | 90.00% | 280 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.36268 x 10-1 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 14 | 8 | 63.64% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.64087 x 10-1 | 17 | 11 | 7 | 11 | 60.71% | 61.11% | 28 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '17.1792' Avg. expression score in LCM sample: '43.3442' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.43991 x 10-1 | 16 | 9 | 9 | 25 | 64.00% | 73.53% | 25 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '13.9585' Avg. expression score in LCM sample: '43.3442' Tissue used: 'full endosperm' |
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| AT4G03010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 17 | 22 | 4 | 7 | 43.59% | 63.64% | 39 | 11 | TAIR8 |
Avg. embryo expression (dissected): '24.2518' Avg. embryo expression (LCM): '19.0388' |
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| AT4G03010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.49286 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.26318 x 10-1 | 44 | 12 | 78.57% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.34 x 10-3 | 472 | 68 | 87.41% | 540 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 516 | 124 | 80.62% | 640 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G03000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.57926 x 10-1 | 65 | 21 | 23 | 43 | 75.58% | 65.15% | 86 | 66 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.0e-09' Avg. expression score for this sample: '90.212' Avg. expression score in LCM sample: '35.0104' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G03000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 32 | 30 | 14 | 11 | 51.61% | 44.00% | 62 | 25 | TAIR8 |
Avg. embryo expression (dissected): '85.0041' Avg. embryo expression (LCM): '60.7207' |
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| AT4G03000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.9 x 10-11 | 239 | 45 | 54 | 250 | 84.15% | 82.24% | 284 | 304 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.0e-09' Avg. expression score for this sample: '194.269' Avg. expression score in LCM sample: '35.0104' Tissue used: 'full endosperm' |
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| AT4G02990 | BSM | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.81553 x 10-1 | 227 | 115 | 186 | 387 | 66.37% | 67.54% | 342 | 573 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.149983' Avg. expression score for this sample: '165.842' Avg. expression score in LCM sample: '97.6236' Tissue used: 'full endosperm' |
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| AT4G02990 | BSM | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.65214 x 10-1 | 579 | 670 | 118 | 158 | 46.36% | 57.25% | 1249 | 276 | TAIR8 |
Avg. embryo expression (dissected): '609.861' Avg. embryo expression (LCM): '733.685' |
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| AT4G02990 | BSM | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.736 x 10-3 | 54 | 55 | 49.54% | 109 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02990 | BSM | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.809 x 10-3 | 138 | 121 | 75 | 132 | 53.28% | 63.77% | 259 | 207 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.149983' Avg. expression score for this sample: '135.307' Avg. expression score in LCM sample: '97.6236' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02990 | BSM | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.22 x 10-4 | 355 | 130 | 73.20% | 485 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02990 | BSM | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.264 x 10-3 | 333 | 138 | 70.70% | 471 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02980 | ABP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.66642 x 10-1 | 58 | 17 | 77.33% | 75 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02980 | ABP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.2246 x 10-2 | 46 | 17 | 13 | 62 | 73.02% | 82.67% | 63 | 75 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.020873' Avg. expression score for this sample: '45.9286' Avg. expression score in LCM sample: '22.0616' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02980 | ABP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-12 | 106 | 0 | 100.00% | 106 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02980 | ABP1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.6586 | 16 | 21 | 2 | 2 | 43.24% | 50.00% | 37 | 4 | TAIR8 |
Avg. embryo expression (dissected): '24.5419' Avg. embryo expression (LCM): '18.8504' |
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| AT4G02980 | ABP1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.79777 x 10-1 | 84 | 46 | 36 | 129 | 64.62% | 78.18% | 130 | 165 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.020873' Avg. expression score for this sample: '58.8386' Avg. expression score in LCM sample: '22.0616' Tissue used: 'full endosperm' |
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| AT4G02980 | ABP1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.15018 x 10-1 | 52 | 10 | 83.87% | 62 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02970 | AT7SL-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.103 x 10-3 | 2 | 6 | 25.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02970 | AT7SL-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.1 x 10-7 | 91 | 1 | 98.91% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02970 | AT7SL-1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-11 | 1 | 19 | 5.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G02970 | AT7SL-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.8486 x 10-2 | 118 | 6 | 30 | 1 | 95.16% | 3.23% | 124 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000434' Avg. expression score for this sample: '47.582' Avg. expression score in LCM sample: '43.4911' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G02970 | AT7SL-1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.866 x 10-3 | 159 | 8 | 33 | 6 | 95.21% | 15.38% | 167 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000434' Avg. expression score for this sample: '42.4953' Avg. expression score in LCM sample: '43.4911' Tissue used: 'full endosperm' |
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| AT4G02970 | AT7SL-1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.1 x 10-6 | 48 | 1 | 4 | 1 | 97.96% | 20.00% | 49 | 5 | TAIR8 |
Avg. embryo expression (dissected): '21.2127' Avg. embryo expression (LCM): '12.3828' |