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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT4G11840 PLDGAMMA3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.68192 x 10-1 63 24 15 49 72.41% 76.56% 87 64 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.672089'
Avg. expression score for this sample: '27.0274'
Avg. expression score in LCM sample: '17.4611'
Tissue used: 'full endosperm'
AT4G11840 PLDGAMMA3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.92851 x 10-1 45 42 13 15 51.72% 53.57% 87 28 TAIR8 Avg. embryo expression (dissected): '36.4709'
Avg. embryo expression (LCM): '12.2069'
AT4G11830 PLDGAMMA2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.2 x 10-22 716 68 236 25 91.33% 9.58% 784 261 TAIR8 Avg. embryo expression (dissected): '253.978'
Avg. embryo expression (LCM): '100.921'
AT4G11830 PLDGAMMA2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 x 10-28 1444 50 318 215 96.65% 40.34% 1494 533 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.2e-21'
Avg. expression score for this sample: '234.367'
Avg. expression score in LCM sample: '113.086'
Tissue used: 'full endosperm'
AT4G11830 PLDGAMMA2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.85 x 10-3 91 47 65.94% 138 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11830 PLDGAMMA2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.02809 x 10-1 802 45 354 117 94.69% 24.84% 847 471 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '3.2e-21'
Avg. expression score for this sample: '204.865'
Avg. expression score in LCM sample: '113.086'
Tissue used: 'pure endosperm, no chalazal'
AT4G11830 PLDGAMMA2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 2106 17 99.20% 2123 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11830 PLDGAMMA2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.323 x 10-3 272 119 69.57% 391 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11820 HMGS endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.46 x 10-4 330 122 73.01% 452 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11820 HMGS endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 681 83 89.14% 764 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11820 HMGS endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.76497 x 10-1 476 124 197 214 79.33% 52.07% 600 411 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.169263'
Avg. expression score for this sample: '555.57'
Avg. expression score in LCM sample: '566.031'
Tissue used: 'pure endosperm, no chalazal'
AT4G11820 HMGS endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.66 x 10-3 305 64 348 341 82.66% 49.49% 369 689 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.169263'
Avg. expression score for this sample: '580.115'
Avg. expression score in LCM sample: '566.031'
Tissue used: 'full endosperm'
AT4G11820 HMGS embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.8 x 10-11 1069 499 289 138 68.18% 32.32% 1568 427 TAIR8 Avg. embryo expression (dissected): '1625.44'
Avg. embryo expression (LCM): '1301.81'
AT4G11820 HMGS endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.05982 x 10-1 50 25 66.67% 75 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11810 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.8032 x 10-1 11 4 73.33% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11810 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 9.00888 x 10-1 55 12 38 38 82.09% 50.00% 67 76 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '64.6944'
Avg. expression score in LCM sample: '65.3616'
Tissue used: 'pure endosperm, no chalazal'
AT4G11810 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.11656 x 10-1 224 88 71.79% 312 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11810 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.48973 x 10-1 38 12 76.00% 50 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11810 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.6384 x 10-2 53 20 16 12 72.60% 42.86% 73 28 TAIR8 Avg. embryo expression (dissected): '64.9523'
Avg. embryo expression (LCM): '28.5205'
AT4G11810 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.99081 x 10-1 50 15 27 44 76.92% 61.97% 65 71 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '22.0441'
Avg. expression score in LCM sample: '65.3616'
Tissue used: 'full endosperm'
AT4G11800 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.2 x 10-4 821 209 445 853 79.71% 65.72% 1030 1298 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000012'
Avg. expression score for this sample: '128.831'
Avg. expression score in LCM sample: '74.6066'
Tissue used: 'full endosperm'
AT4G11800 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.434 x 10-3 420 219 149 61 65.73% 29.05% 639 210 TAIR8 Avg. embryo expression (dissected): '103.238'
Avg. embryo expression (LCM): '59.8667'
AT4G11800 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0681 176 52 77.19% 228 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11800 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.7 x 10-8 491 109 81.83% 600 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11800 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 1350 81 94.34% 1431 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11800 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.868 x 10-2 539 87 250 275 86.10% 52.38% 626 525 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000012'
Avg. expression score for this sample: '92.0501'
Avg. expression score in LCM sample: '74.6066'
Tissue used: 'pure endosperm, no chalazal'
AT4G11790 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.56648 x 10-1 47 11 20 27 81.03% 57.45% 58 47 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.00006'
Avg. expression score for this sample: '50.1793'
Avg. expression score in LCM sample: '54.6909'
Tissue used: 'pure endosperm, no chalazal'
AT4G11790 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.26 x 10-4 296 40 88.10% 336 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11790 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.69757 x 10-1 138 35 79.77% 173 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11790 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 39 39 8 10 50.00% 55.56% 78 18 TAIR8 Avg. embryo expression (dissected): '69.3417'
Avg. embryo expression (LCM): '210.67'
AT4G11790 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.2 x 10-5 170 24 56 152 87.63% 73.08% 194 208 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.00006'
Avg. expression score for this sample: '129.579'
Avg. expression score in LCM sample: '54.6909'
Tissue used: 'full endosperm'
AT4G11790 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 17 5 77.27% 22 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11780 TRM10 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11780 TRM10 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.1086 x 10-2 25 0 100.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11780 TRM10 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11780 TRM10 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.1481 x 10-2 9 0 2 23 100.00% 92.00% 9 25 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.002266'
Avg. expression score for this sample: '9.69531'
Avg. expression score in LCM sample: '1.02885'
Tissue used: 'pure endosperm, no chalazal'
AT4G11780 TRM10 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.8852 x 10-2 19 3 11 40 86.36% 78.43% 22 51 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.002266'
Avg. expression score for this sample: '26.5414'
Avg. expression score in LCM sample: '1.02885'
Tissue used: 'full endosperm'
AT4G11780 TRM10 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 6 11 0 5 35.29% 100.00% 17 5 TAIR8 Avg. embryo expression (dissected): '11.3841'
Avg. embryo expression (LCM): '3.54152'
AT4G11770 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.243967'
Avg. embryo expression (LCM): '0'
AT4G11770 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.437822'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G11770 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.994705'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G11770 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11770 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11770 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11760 LCR17 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11760 LCR17 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11760 LCR17 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G11760 LCR17 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '1.22038'
Avg. embryo expression (LCM): '0'
AT4G11760 LCR17 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 2 0 0.00% 0 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.854114'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G11760 LCR17 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11750 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11750 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11750 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11750 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G11750 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '2.98859'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G11750 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT4G11745 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT4G11745 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G11745 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.423719'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G11745 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11745 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11745 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11740 SAY1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.9859 x 10-2 131 27 82.91% 158 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11740 SAY1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 9.06106 x 10-1 123 46 72.78% 169 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11740 SAY1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.7765 x 10-2 41 4 17 40 91.11% 70.18% 45 57 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.153641'
Avg. expression score for this sample: '281.476'
Avg. expression score in LCM sample: '256.346'
Tissue used: 'full endosperm'
AT4G11740 SAY1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.54117 x 10-1 15 13 4 7 53.57% 63.64% 28 11 TAIR8 Avg. embryo expression (dissected): '256.551'
Avg. embryo expression (LCM): '232.685'
AT4G11740 SAY1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 39 7 24 24 84.78% 50.00% 46 48 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.153641'
Avg. expression score for this sample: '355.461'
Avg. expression score in LCM sample: '256.346'
Tissue used: 'pure endosperm, no chalazal'
AT4G11740 SAY1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.127 x 10-3 21 0 100.00% 21 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11730 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11730 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11730 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11730 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G11730 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 1 0 1 0 100.00% 0.00% 1 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.292025'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G11730 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT4G11720 HAP2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 0 2 0 2 0.00% 100.00% 2 2 TAIR8 Avg. embryo expression (dissected): '8.61543'
Avg. embryo expression (LCM): '5.62624'
AT4G11720 HAP2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 1 0 1 50.00% 100.00% 2 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '4.75624'
Avg. expression score in LCM sample: '7.24607'
Tissue used: 'pure endosperm, no chalazal'
AT4G11720 HAP2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 3 1 0 1 75.00% 100.00% 4 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.80198'
Avg. expression score in LCM sample: '7.24607'
Tissue used: 'full endosperm'
AT4G11720 HAP2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11720 HAP2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11720 HAP2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11700 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11700 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '4.21863'
Avg. expression score in LCM sample: '2.66032'
Tissue used: 'full endosperm'
AT4G11700 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '5.03935'
Avg. embryo expression (LCM): '6.83187'
AT4G11700 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.26496'
Avg. expression score in LCM sample: '2.66032'
Tissue used: 'pure endosperm, no chalazal'
AT4G11700 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11690 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.53972 x 10-1 9 1 90.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11690 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.6 x 10-7 171 10 94.48% 181 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11690 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.51 x 10-4 56 3 94.92% 59 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11690 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.99553 x 10-1 9 8 5 9 52.94% 64.29% 17 14 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.122383'
Avg. expression score for this sample: '9.11247'
Avg. expression score in LCM sample: '12.9636'
Tissue used: 'pure endosperm, no chalazal'
AT4G11690 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.8462 x 10-2 58 11 12 35 84.06% 74.47% 69 47 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.122383'
Avg. expression score for this sample: '29.4644'
Avg. expression score in LCM sample: '12.9636'
Tissue used: 'full endosperm'
AT4G11690 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 37 30 11 3 55.22% 21.43% 67 14 TAIR8 Avg. embryo expression (dissected): '42.1081'
Avg. embryo expression (LCM): '57.6188'
AT4G11680 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 7 7 1 1 50.00% 50.00% 14 2 TAIR8 Avg. embryo expression (dissected): '90.7835'
Avg. embryo expression (LCM): '42.448'
AT4G11680 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.43017 x 10-1 9 1 2 6 90.00% 75.00% 10 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.324182'
Avg. expression score for this sample: '74.284'
Avg. expression score in LCM sample: '44.0497'
Tissue used: 'pure endosperm, no chalazal'
AT4G11680 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.45957 x 10-1 16 3 9 17 84.21% 65.38% 19 26 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.324182'
Avg. expression score for this sample: '74.4877'
Avg. expression score in LCM sample: '44.0497'
Tissue used: 'full endosperm'
AT4G11680 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.7832 x 10-2 0 3 0.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11680 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.56697 x 10-1 22 3 88.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11680 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.6704 x 10-2 37 3 92.50% 40 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11670 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G11670 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'