| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G13210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 46 | 18 | 11 | 14 | 71.88% | 56.00% | 64 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.6729' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G13210 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.09116 x 10-1 | 80 | 83 | 22 | 40 | 49.08% | 64.52% | 163 | 62 | TAIR8 |
Avg. embryo expression (dissected): '116.192' Avg. embryo expression (LCM): '41.1545' |
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| AT4G13200 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.10638 x 10-1 | 50 | 26 | 14 | 6 | 65.79% | 30.00% | 76 | 20 | TAIR8 |
Avg. embryo expression (dissected): '135.977' Avg. embryo expression (LCM): '169.578' |
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| AT4G13200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.46851 x 10-1 | 89 | 13 | 29 | 34 | 87.25% | 53.97% | 102 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.082191' Avg. expression score for this sample: '161.932' Avg. expression score in LCM sample: '33.4084' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.19737 x 10-1 | 156 | 16 | 67 | 45 | 90.70% | 40.18% | 172 | 112 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.082191' Avg. expression score for this sample: '202.701' Avg. expression score in LCM sample: '33.4084' Tissue used: 'full endosperm' |
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| AT4G13200 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.0 x 10-9 | 143 | 10 | 93.46% | 153 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.80529 x 10-1 | 9 | 6 | 60.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.68844 x 10-1 | 38 | 13 | 74.51% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13195 | CLE44 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13195 | CLE44 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.13966 x 10-1 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13195 | CLE44 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 7 | 4 | 3 | 0 | 63.64% | 0.00% | 11 | 3 | TAIR8 |
Avg. embryo expression (dissected): '6.57607' Avg. embryo expression (LCM): '3.11453' |
|||
| AT4G13195 | CLE44 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 8 | 4 | 0 | 2 | 66.67% | 100.00% | 12 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.16232' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G13195 | CLE44 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT4G13195 | CLE44 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.223609' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G13190 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 5 | 1 | 0 | 0 | 83.33% | 6 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.55303' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G13190 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 5 | 1 | 4 | 37.50% | 80.00% | 8 | 5 | TAIR8 |
Avg. embryo expression (dissected): '4.40903' Avg. embryo expression (LCM): '3.24011' |
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| AT4G13180 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 15 | 15 | 3 | 5 | 50.00% | 62.50% | 30 | 8 | TAIR8 |
Avg. embryo expression (dissected): '42.7168' Avg. embryo expression (LCM): '0' |
||||
| AT4G13180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.99553 x 10-1 | 2 | 8 | 5 | 16 | 20.00% | 76.19% | 10 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.747604' Avg. expression score for this sample: '28.2359' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 41 | 40 | 15 | 66 | 50.62% | 81.48% | 81 | 81 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.747604' Avg. expression score for this sample: '66.8688' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT4G13180 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2 x 10-6 | 149 | 24 | 86.13% | 173 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.61549 x 10-1 | 15 | 5 | 75.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.649 x 10-3 | 8 | 15 | 34.78% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13170 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.9381 x 10-2 | 165 | 124 | 57.09% | 289 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13170 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.1 x 10-16 | 325 | 43 | 88.32% | 368 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13170 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.38 x 10-4 | 389 | 202 | 87 | 33 | 65.82% | 27.50% | 591 | 120 | TAIR8 |
Avg. embryo expression (dissected): '486.182' Avg. embryo expression (LCM): '507.907' |
||||
| AT4G13170 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.52351 x 10-1 | 93 | 26 | 63 | 75 | 78.15% | 54.35% | 119 | 138 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.544544' Avg. expression score for this sample: '91.6667' Avg. expression score in LCM sample: '20.5624' Tissue used: 'full endosperm' |
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| AT4G13170 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.58506 x 10-1 | 113 | 49 | 35 | 35 | 69.75% | 50.00% | 162 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.544544' Avg. expression score for this sample: '110.284' Avg. expression score in LCM sample: '20.5624' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G13170 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 31 | 17 | 64.58% | 48 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13160 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.53869 x 10-1 | 13 | 5 | 72.22% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13160 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-10 | 134 | 0 | 100.00% | 134 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13160 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.19252 x 10-1 | 18 | 5 | 8 | 13 | 78.26% | 61.90% | 23 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.5e-06' Avg. expression score for this sample: '39.6783' Avg. expression score in LCM sample: '8.01036' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G13160 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-7 | 132 | 3 | 97.78% | 135 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13160 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.5 x 10-7 | 90 | 25 | 36 | 205 | 78.26% | 85.06% | 115 | 241 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.5e-06' Avg. expression score for this sample: '148.416' Avg. expression score in LCM sample: '8.01036' Tissue used: 'full endosperm' |
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| AT4G13160 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.38262 x 10-1 | 22 | 17 | 5 | 4 | 56.41% | 44.44% | 39 | 9 | TAIR8 |
Avg. embryo expression (dissected): '62.1298' Avg. embryo expression (LCM): '70.7173' |
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| AT4G13150 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '16.4733' Avg. embryo expression (LCM): '10.5492' |
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| AT4G13150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '13.043' Avg. expression score in LCM sample: '4.11542' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '40.7889' Avg. expression score in LCM sample: '4.11542' Tissue used: 'full endosperm' |
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| AT4G13150 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13142 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.8 x 10-6 | 30 | 0 | 100.00% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13142 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.13585 x 10-1 | 7 | 12 | 11 | 22 | 36.84% | 66.67% | 19 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.478854' Avg. expression score for this sample: '103.992' Avg. expression score in LCM sample: '12.0523' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13142 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-7 | 39 | 0 | 100.00% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13142 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.41197 x 10-1 | 10 | 21 | 2 | 3 | 32.26% | 60.00% | 31 | 5 | TAIR8 |
Avg. embryo expression (dissected): '101.9' Avg. embryo expression (LCM): '20.5835' |
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| AT4G13142 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 23 | 29 | 7 | 46 | 44.23% | 86.79% | 52 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.478854' Avg. expression score for this sample: '128.382' Avg. expression score in LCM sample: '12.0523' Tissue used: 'full endosperm' |
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| AT4G13142 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.355 x 10-3 | 19 | 1 | 95.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.33073 x 10-1 | 22 | 4 | 84.62% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.07986 x 10-1 | 23 | 9 | 10 | 25 | 71.88% | 71.43% | 32 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.205721' Avg. expression score for this sample: '33.2601' Avg. expression score in LCM sample: '11.4644' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.6 x 10-5 | 65 | 3 | 95.59% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.43828 x 10-1 | 40 | 20 | 9 | 44 | 66.67% | 83.02% | 60 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.205721' Avg. expression score for this sample: '62.9605' Avg. expression score in LCM sample: '11.4644' Tissue used: 'full endosperm' |
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| AT4G13140 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.68 x 10-4 | 102 | 12 | 89.47% | 114 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13140 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.70916 x 10-1 | 8 | 13 | 2 | 2 | 38.10% | 50.00% | 21 | 4 | TAIR8 |
Avg. embryo expression (dissected): '14.7868' Avg. embryo expression (LCM): '14.6935' |
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| AT4G13130 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.54262' Avg. embryo expression (LCM): '.514902' |
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| AT4G13130 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.85714 x 10-1 | 0 | 3 | 0 | 1 | 0.00% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.781085' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G13130 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.6923 x 10-2 | 9 | 1 | 90.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13130 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13130 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13130 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.420007' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.22 x 10-4 | 533 | 393 | 216 | 1014 | 57.56% | 82.44% | 926 | 1230 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.4e-22' Avg. expression score for this sample: '475.557' Avg. expression score in LCM sample: '114.453' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 848 | 79 | 91.48% | 927 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13110 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1270 | 100 | 92.70% | 1370 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13110 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.13348 x 10-1 | 76 | 140 | 8 | 35 | 35.19% | 81.40% | 216 | 43 | TAIR8 |
Avg. embryo expression (dissected): '79.9886' Avg. embryo expression (LCM): '27.7921' |
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| AT4G13110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.6 x 10-21 | 941 | 484 | 299 | 1680 | 66.04% | 84.89% | 1425 | 1979 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.4e-22' Avg. expression score for this sample: '615.834' Avg. expression score in LCM sample: '114.453' Tissue used: 'full endosperm' |
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| AT4G13110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.4 x 10-12 | 324 | 36 | 90.00% | 360 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13100 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.3851 x 10-1 | 43 | 26 | 62.32% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13100 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.1307 x 10-2 | 19 | 2 | 90.48% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13100 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.51033 x 10-1 | 50 | 47 | 40 | 143 | 51.55% | 78.14% | 97 | 183 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.524705' Avg. expression score for this sample: '95.4891' Avg. expression score in LCM sample: '18.6076' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13100 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.20522 x 10-1 | 45 | 49 | 41 | 150 | 47.87% | 78.53% | 94 | 191 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.524705' Avg. expression score for this sample: '90.9202' Avg. expression score in LCM sample: '18.6076' Tissue used: 'full endosperm' |
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| AT4G13100 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.19179 x 10-1 | 15 | 8 | 65.22% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13100 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.5897 x 10-2 | 154 | 232 | 63 | 78 | 39.90% | 55.32% | 386 | 141 | TAIR8 |
Avg. embryo expression (dissected): '283.157' Avg. embryo expression (LCM): '156.693' |
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| AT4G13095 | LCR37 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G13095 | LCR37 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G13095 | LCR37 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13095 | LCR37 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13095 | LCR37 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13095 | LCR37 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13090 | XTH2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 5 | 37.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13090 | XTH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13090 | XTH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13090 | XTH2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G13090 | XTH2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT4G13090 | XTH2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13080 | XTH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13080 | XTH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '.29772' Avg. expression score in LCM sample: '1.67556' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13080 | XTH1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.346 x 10-3 | 305 | 275 | 52.59% | 580 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13080 | XTH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 2.30769 x 10-1 | 0 | 0 | 0 | 7 | 100.00% | 0 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.1' Avg. expression score for this sample: '1.52803' Avg. expression score in LCM sample: '1.67556' Tissue used: 'full endosperm' |
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| AT4G13080 | XTH1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.8948 x 10-2 | 516 | 253 | 67.10% | 769 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13080 | XTH1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G13075 | RALFL30 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G13075 | RALFL30 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 1 | 0 | 0 | 75.00% | 4 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.409859' Avg. expression score for this sample: '1.4135' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT4G13075 | RALFL30 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13075 | RALFL30 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13075 | RALFL30 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13075 | RALFL30 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.5671 | 2 | 0 | 4 | 0 | 100.00% | 0.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.409859' Avg. expression score for this sample: '3.03681' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.18817 x 10-1 | 44 | 12 | 10 | 22 | 78.57% | 68.75% | 56 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.372369' Avg. expression score for this sample: '15.1362' Avg. expression score in LCM sample: '6.64346' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.182 x 10-3 | 24 | 28 | 46.15% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |