| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G14010 | RALFL32 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G14010 | RALFL32 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G14000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 480 | 17 | 96.58% | 497 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G14000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.088 x 10-3 | 147 | 106 | 58.10% | 253 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G14000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.5937 x 10-1 | 192 | 53 | 83 | 144 | 78.37% | 63.44% | 245 | 227 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.274756' Avg. expression score for this sample: '89.1049' Avg. expression score in LCM sample: '38.4203' Tissue used: 'full endosperm' |
|||||
| AT4G14000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.67764 x 10-1 | 240 | 213 | 45 | 33 | 52.98% | 42.31% | 453 | 78 | TAIR8 |
Avg. embryo expression (dissected): '184.244' Avg. embryo expression (LCM): '148.769' |
||||
| AT4G14000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.1799 x 10-2 | 44 | 36 | 55.00% | 80 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G14000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 169 | 55 | 70 | 83 | 75.45% | 54.25% | 224 | 153 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.274756' Avg. expression score for this sample: '96.3413' Avg. expression score in LCM sample: '38.4203' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G13992 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 0 | 0.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.93438' Avg. expression score in LCM sample: '8.39251' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT4G13992 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G13992 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.469211' Avg. expression score in LCM sample: '8.39251' Tissue used: 'full endosperm' |
||||||
| AT4G13992 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13992 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13992 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.886 x 10-3 | 385 | 266 | 59.14% | 651 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.6907 x 10-2 | 830 | 354 | 577 | 824 | 70.10% | 58.82% | 1184 | 1401 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.077603' Avg. expression score for this sample: '567.195' Avg. expression score in LCM sample: '259.374' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.1348 x 10-2 | 435 | 185 | 70.16% | 620 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.7 x 10-4 | 115 | 30 | 79.31% | 145 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13990 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.57582 x 10-1 | 21 | 22 | 17 | 23 | 48.84% | 57.50% | 43 | 40 | TAIR8 |
Avg. embryo expression (dissected): '40.4926' Avg. embryo expression (LCM): '39.886' |
||||
| AT4G13990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.6841 x 10-1 | 1196 | 627 | 506 | 1001 | 65.61% | 66.42% | 1823 | 1507 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.077603' Avg. expression score for this sample: '550.273' Avg. expression score in LCM sample: '259.374' Tissue used: 'full endosperm' |
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| AT4G13985 | FBD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.00207' Avg. expression score in LCM sample: '4.2624' Tissue used: 'full endosperm' |
||||||
| AT4G13985 | FBD1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.632508' Avg. embryo expression (LCM): '0' |
|||||
| AT4G13985 | FBD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13985 | FBD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13985 | FBD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13985 | FBD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.06022' Avg. expression score in LCM sample: '4.2624' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT4G13980 | AT-HSFA5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.66383 x 10-1 | 193 | 190 | 75 | 420 | 50.39% | 84.85% | 383 | 495 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000041' Avg. expression score for this sample: '177.218' Avg. expression score in LCM sample: '70.1532' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G13980 | AT-HSFA5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.6 x 10-23 | 582 | 63 | 90.23% | 645 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13980 | AT-HSFA5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.2 x 10-17 | 532 | 70 | 88.37% | 602 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13980 | AT-HSFA5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.7 x 10-5 | 353 | 185 | 124 | 550 | 65.61% | 81.60% | 538 | 674 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000041' Avg. expression score for this sample: '251.26' Avg. expression score in LCM sample: '70.1532' Tissue used: 'full endosperm' |
||||
| AT4G13980 | AT-HSFA5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.0696 x 10-2 | 71 | 152 | 24 | 56 | 31.84% | 70.00% | 223 | 80 | TAIR8 |
Avg. embryo expression (dissected): '107.985' Avg. embryo expression (LCM): '59.2137' |
|||
| AT4G13980 | AT-HSFA5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.93 x 10-4 | 135 | 25 | 84.38% | 160 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.982 x 10-3 | 18 | 0 | 100.00% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.71333 x 10-1 | 14 | 19 | 8 | 25 | 42.42% | 75.76% | 33 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '33.7763' Avg. expression score in LCM sample: '14.0512' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G13970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.05249 x 10-1 | 21 | 28 | 2 | 4 | 42.86% | 66.67% | 49 | 6 | TAIR8 |
Avg. embryo expression (dissected): '53.8175' Avg. embryo expression (LCM): '49.732' |
||||
| AT4G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.60466 x 10-1 | 24 | 18 | 14 | 52 | 57.14% | 78.79% | 42 | 66 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '44.6345' Avg. expression score in LCM sample: '14.0512' Tissue used: 'full endosperm' |
|||||
| AT4G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.0 x 10-7 | 77 | 5 | 93.90% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.35 x 10-4 | 103 | 17 | 85.83% | 120 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13968 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13968 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13968 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G13968 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT4G13968 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13968 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.972031' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13965 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13965 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.788348' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G13965 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G13965 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7575 x 10-2 | 121 | 17 | 87.68% | 138 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13965 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13965 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.1032' Avg. expression score in LCM sample: '16.9614' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13960 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13960 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.85714 x 10-1 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13960 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '27.8575' Avg. expression score in LCM sample: '16.9614' Tissue used: 'full endosperm' |
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| AT4G13960 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G13955 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G13955 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.18112' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT4G13955 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 34 | 10 | 77.27% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13955 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 35 | 26 | 57.38% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13955 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G13955 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13950 | RALFL31 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.09859 x 10-1 | 4 | 4 | 1 | 1 | 50.00% | 50.00% | 8 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '113.892' Avg. expression score in LCM sample: '12.1846' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G13950 | RALFL31 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.8765 x 10-2 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13950 | RALFL31 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.3895 x 10-2 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13950 | RALFL31 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 6 | 0 | 0 | 50.00% | 12 | 0 | TAIR8 |
Avg. embryo expression (dissected): '134.676' Avg. embryo expression (LCM): '77.0594' |
||||
| AT4G13950 | RALFL31 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.53614 x 10-1 | 8 | 4 | 2 | 11 | 66.67% | 84.62% | 12 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '144.416' Avg. expression score in LCM sample: '12.1846' Tissue used: 'full endosperm' |
||||
| AT4G13950 | RALFL31 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.42319 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13940 | HOG1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.0204 x 10-2 | 914 | 458 | 66.62% | 1372 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13940 | HOG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.49385 x 10-1 | 1966 | 938 | 754 | 1388 | 67.70% | 64.80% | 2904 | 2142 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.9e-06' Avg. expression score for this sample: '1664.59' Avg. expression score in LCM sample: '1255.38' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13940 | HOG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.7 x 10-10 | 3451 | 1332 | 1247 | 2852 | 72.15% | 69.58% | 4783 | 4099 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.9e-06' Avg. expression score for this sample: '2423.63' Avg. expression score in LCM sample: '1255.38' Tissue used: 'full endosperm' |
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| AT4G13940 | HOG1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.0 x 10-5 | 4574 | 3972 | 660 | 657 | 53.52% | 49.89% | 8546 | 1317 | TAIR8 |
Avg. embryo expression (dissected): '4465.46' Avg. embryo expression (LCM): '6864.9' |
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| AT4G13940 | HOG1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.9 x 10-16 | 1196 | 316 | 79.10% | 1512 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13940 | HOG1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1921 | 202 | 90.49% | 2123 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13930 | SHM4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.5 x 10-20 | 430 | 29 | 93.68% | 459 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13930 | SHM4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.3 x 10-13 | 340 | 32 | 91.40% | 372 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13930 | SHM4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0083 | 169 | 74 | 77 | 258 | 69.55% | 77.01% | 243 | 335 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00076' Avg. expression score for this sample: '85.8111' Avg. expression score in LCM sample: '69.5211' Tissue used: 'full endosperm' |
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| AT4G13930 | SHM4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.2641 x 10-2 | 114 | 201 | 20 | 49 | 36.19% | 71.01% | 315 | 69 | TAIR8 |
Avg. embryo expression (dissected): '143.402' Avg. embryo expression (LCM): '118.126' |
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| AT4G13930 | SHM4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.59464 x 10-1 | 89 | 21 | 80.91% | 110 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13930 | SHM4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.4173 x 10-2 | 102 | 41 | 25 | 96 | 71.33% | 79.34% | 143 | 121 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00076' Avg. expression score for this sample: '67.8973' Avg. expression score in LCM sample: '69.5211' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13920 | RLP50 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.11429 x 10-1 | 23 | 3 | 21 | 17 | 88.46% | 44.74% | 26 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.463918' Avg. expression score for this sample: '19.9761' Avg. expression score in LCM sample: '13.8601' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13920 | RLP50 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 33 | 30 | 5 | 3 | 52.38% | 37.50% | 63 | 8 | TAIR8 |
Avg. embryo expression (dissected): '28.3778' Avg. embryo expression (LCM): '15.4973' |
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| AT4G13920 | RLP50 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.41533 x 10-1 | 49 | 7 | 14 | 20 | 87.50% | 58.82% | 56 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.463918' Avg. expression score for this sample: '17.6028' Avg. expression score in LCM sample: '13.8601' Tissue used: 'full endosperm' |
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| AT4G13920 | RLP50 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-7 | 80 | 3 | 96.39% | 83 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13920 | RLP50 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-5 | 3 | 14 | 17.65% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13920 | RLP50 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.1471 x 10-2 | 4 | 6 | 40.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G13890 | EDA36 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13890 | EDA36 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.62656' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13890 | EDA36 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13890 | EDA36 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13890 | EDA36 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G13890 | EDA36 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 3 | 100.00% | 100.00% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.54937' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G13885 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.95444 x 10-1 | 14 | 19 | 8 | 28 | 42.42% | 77.78% | 33 | 36 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.540151' Avg. expression score for this sample: '16.122' Avg. expression score in LCM sample: '5.6146' Tissue used: 'full endosperm' |
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| AT4G13885 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.6714 x 10-2 | 7 | 22 | 4 | 4 | 24.14% | 50.00% | 29 | 8 | TAIR8 |
Avg. embryo expression (dissected): '23.006' Avg. embryo expression (LCM): '11.2023' |
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| AT4G13885 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.44461 x 10-1 | 22 | 16 | 57.89% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13885 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.65 x 10-4 | 56 | 8 | 87.50% | 64 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13885 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G13885 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 6 | 3 | 12 | 25.00% | 80.00% | 8 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.540151' Avg. expression score for this sample: '8.59171' Avg. expression score in LCM sample: '5.6146' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13880 | RLP48 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 2 | 1 | 1 | 50.00% | 50.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.45373' Avg. expression score in LCM sample: '4.65924' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G13880 | RLP48 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.32799 x 10-1 | 18 | 4 | 81.82% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |