| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G16940 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.55464' Avg. embryo expression (LCM): '.376757' |
||||||
| AT4G16940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16940 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16940 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16930 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT4G16930 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G16930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16930 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16930 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232547' Avg. expression score for this sample: '2.38883' Avg. expression score in LCM sample: '1.13174' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16920 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.02211 x 10-1 | 1 | 3 | 0 | 20 | 25.00% | 100.00% | 4 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232547' Avg. expression score for this sample: '11.3091' Avg. expression score in LCM sample: '1.13174' Tissue used: 'full endosperm' |
|||||
| AT4G16920 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 2 | 0 | 2 | 33.33% | 100.00% | 3 | 2 | TAIR8 |
Avg. embryo expression (dissected): '5.71418' Avg. embryo expression (LCM): '3.215' |
||||
| AT4G16920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.0855 x 10-1 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16920 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.20466 x 10-1 | 22 | 2 | 91.67% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16920 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.598 x 10-3 | 0 | 4 | 0.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 1 | 1 | 4 | 75.00% | 80.00% | 4 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.064312' Avg. expression score for this sample: '5.7368' Avg. expression score in LCM sample: '6.70225' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G16900 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.10619 x 10-1 | 29 | 1 | 5 | 3 | 96.67% | 37.50% | 30 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.064312' Avg. expression score for this sample: '19.2551' Avg. expression score in LCM sample: '6.70225' Tissue used: 'full endosperm' |
|||||
| AT4G16900 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 0 | 2 | 0 | 100.00% | 0.00% | 2 | 2 | TAIR8 |
Avg. embryo expression (dissected): '7.14706' Avg. embryo expression (LCM): '9.6701' |
||||
| AT4G16900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16900 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16900 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.705 x 10-3 | 65 | 1 | 98.48% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16892 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 0 | 4 | 1 | 100.00% | 20.00% | 8 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.250627' Avg. expression score for this sample: '4.18474' Avg. expression score in LCM sample: '2.07241' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G16892 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.70634 x 10-1 | 28 | 0 | 6 | 1 | 100.00% | 14.29% | 28 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.250627' Avg. expression score for this sample: '8.54521' Avg. expression score in LCM sample: '2.07241' Tissue used: 'full endosperm' |
|||||
| AT4G16892 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 0 | 1 | 0 | 100.00% | 0.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '8.61694' Avg. embryo expression (LCM): '1.77076' |
||||
| AT4G16892 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16892 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16892 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.94751 x 10-1 | 24 | 2 | 92.31% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16890 | SNC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.4 x 10-9 | 206 | 2 | 99.04% | 208 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16890 | SNC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 15 | 4 | 8 | 11 | 78.95% | 57.89% | 19 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.023396' Avg. expression score for this sample: '5.49619' Avg. expression score in LCM sample: '1.88133' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G16890 | SNC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.056 x 10-3 | 24 | 2 | 8 | 41 | 92.31% | 83.67% | 26 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.023396' Avg. expression score for this sample: '11.6768' Avg. expression score in LCM sample: '1.88133' Tissue used: 'full endosperm' |
||||
| AT4G16890 | SNC1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.9602 x 10-2 | 20 | 4 | 3 | 3 | 83.33% | 50.00% | 24 | 6 | TAIR8 |
Avg. embryo expression (dissected): '10.6594' Avg. embryo expression (LCM): '2.57451' |
|||
| AT4G16890 | SNC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.7498 x 10-2 | 26 | 1 | 96.30% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16890 | SNC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-6 | 29 | 36 | 44.62% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16880 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 2 | 50.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.24374' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G16880 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 3 | 0 | 1 | 62.50% | 100.00% | 8 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.70673' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT4G16880 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '.551942' Avg. embryo expression (LCM): '1.19306' |
||||
| AT4G16880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16880 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.4 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16860 | RPP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.5 x 10-5 | 6 | 10 | 37.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16860 | RPP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 2 | 0 | 6 | 33.33% | 100.00% | 3 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000492' Avg. expression score for this sample: '4.66445' Avg. expression score in LCM sample: '1.20523' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16860 | RPP4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.18 x 10-4 | 4 | 14 | 1 | 96 | 22.22% | 98.97% | 18 | 97 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000492' Avg. expression score for this sample: '19.5724' Avg. expression score in LCM sample: '1.20523' Tissue used: 'full endosperm' |
||||
| AT4G16860 | RPP4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 7 | 11 | 1 | 4 | 38.89% | 80.00% | 18 | 5 | TAIR8 |
Avg. embryo expression (dissected): '11.2049' Avg. embryo expression (LCM): '4.78482' |
|||
| AT4G16860 | RPP4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.15496 x 10-1 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16860 | RPP4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.786 x 10-3 | 77 | 1 | 98.72% | 78 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16855 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16855 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16855 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.32064' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G16855 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G16855 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16855 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 699 | 41 | 94.46% | 740 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.347 x 10-2 | 365 | 239 | 266 | 458 | 60.43% | 63.26% | 604 | 724 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.239706' Avg. expression score for this sample: '269.017' Avg. expression score in LCM sample: '91.2741' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.66579 x 10-1 | 322 | 122 | 104 | 207 | 72.52% | 66.56% | 444 | 311 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.239706' Avg. expression score for this sample: '108.484' Avg. expression score in LCM sample: '91.2741' Tissue used: 'full endosperm' |
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| AT4G16850 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.73 x 10-3 | 430 | 285 | 114 | 80 | 60.14% | 41.24% | 715 | 194 | TAIR8 |
Avg. embryo expression (dissected): '286.519' Avg. embryo expression (LCM): '154.96' |
||||
| AT4G16850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.029 | 71 | 58 | 55.04% | 129 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-21 | 229 | 20 | 91.97% | 249 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16845 | VRN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1115 | 97 | 92.00% | 1212 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16845 | VRN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.23222 x 10-1 | 348 | 174 | 240 | 373 | 66.67% | 60.85% | 522 | 613 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.095118' Avg. expression score for this sample: '170.584' Avg. expression score in LCM sample: '35.5984' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16845 | VRN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.1 x 10-5 | 363 | 102 | 173 | 452 | 78.06% | 72.32% | 465 | 625 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.095118' Avg. expression score for this sample: '114.521' Avg. expression score in LCM sample: '35.5984' Tissue used: 'full endosperm' |
||||
| AT4G16845 | VRN2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.10977 x 10-1 | 266 | 277 | 120 | 110 | 48.99% | 47.83% | 543 | 230 | TAIR8 |
Avg. embryo expression (dissected): '190.679' Avg. embryo expression (LCM): '105.329' |
|||
| AT4G16845 | VRN2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.34002 x 10-1 | 113 | 45 | 71.52% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16845 | VRN2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2228 x 10-1 | 651 | 255 | 71.85% | 906 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16840 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.62395 x 10-1 | 19 | 1 | 95.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 0 | 0 | 66.67% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.320891' Avg. expression score for this sample: '1.71324' Avg. expression score in LCM sample: '3.27764' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT4G16840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.80579 x 10-1 | 14 | 1 | 2 | 5 | 93.33% | 71.43% | 15 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.320891' Avg. expression score for this sample: '8.36992' Avg. expression score in LCM sample: '3.27764' Tissue used: 'full endosperm' |
|||||
| AT4G16840 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 1 | 4 | 0 | 75.00% | 0.00% | 4 | 4 | TAIR8 |
Avg. embryo expression (dissected): '9.21833' Avg. embryo expression (LCM): '5.58857' |
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| AT4G16840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.54347 x 10-1 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.32983 x 10-1 | 14 | 1 | 93.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16835 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-6 | 104 | 14 | 88.14% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16835 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.43108 x 10-1 | 31 | 14 | 16 | 21 | 68.89% | 56.76% | 45 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.693805' Avg. expression score for this sample: '8.65676' Avg. expression score in LCM sample: '8.51009' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16835 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.02065 x 10-1 | 54 | 9 | 42 | 42 | 85.71% | 50.00% | 63 | 84 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.693805' Avg. expression score for this sample: '11.9056' Avg. expression score in LCM sample: '8.51009' Tissue used: 'full endosperm' |
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| AT4G16835 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.11658 x 10-1 | 88 | 58 | 29 | 20 | 60.27% | 40.82% | 146 | 49 | TAIR8 |
Avg. embryo expression (dissected): '33.9563' Avg. embryo expression (LCM): '22.5552' |
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| AT4G16835 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.56522 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16835 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.98 x 10-4 | 27 | 41 | 39.71% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.27 x 10-4 | 1938 | 1019 | 65.54% | 2957 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.92074 x 10-1 | 1682 | 650 | 665 | 911 | 72.13% | 57.80% | 2332 | 1576 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001375' Avg. expression score for this sample: '629.454' Avg. expression score in LCM sample: '203.346' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.0 x 10-7 | 1520 | 397 | 579 | 1016 | 79.29% | 63.70% | 1917 | 1595 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001375' Avg. expression score for this sample: '421.915' Avg. expression score in LCM sample: '203.346' Tissue used: 'full endosperm' |
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| AT4G16830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.3 x 10-14 | 3699 | 2554 | 1401 | 1275 | 59.16% | 47.65% | 6253 | 2676 | TAIR8 |
Avg. embryo expression (dissected): '2280.02' Avg. embryo expression (LCM): '643.401' |
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| AT4G16830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.9 x 10-6 | 445 | 122 | 78.48% | 567 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3303 | 264 | 92.60% | 3567 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16820 | PLA-I{beta]2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16820 | PLA-I{beta]2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.660438' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16820 | PLA-I{beta]2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.116502' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G16820 | PLA-I{beta]2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 0 | 0 | 66.67% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.22712' Avg. embryo expression (LCM): '0' |
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| AT4G16820 | PLA-I{beta]2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16820 | PLA-I{beta]2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G16810 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 378 | 501 | 43.00% | 879 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.474508' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G16810 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G16810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G16810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 813 | 456 | 64.07% | 1269 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16807 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-5 | 55 | 14 | 79.71% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16807 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.86845 x 10-1 | 8 | 6 | 6 | 5 | 57.14% | 45.45% | 14 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010204' Avg. expression score for this sample: '8.0348' Avg. expression score in LCM sample: '8.71586' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G16807 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3492 x 10-2 | 2 | 3 | 16 | 6 | 40.00% | 27.27% | 5 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.010204' Avg. expression score for this sample: '5.15113' Avg. expression score in LCM sample: '8.71586' Tissue used: 'full endosperm' |
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| AT4G16807 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.44533 x 10-1 | 24 | 18 | 6 | 4 | 57.14% | 40.00% | 42 | 10 | TAIR8 |
Avg. embryo expression (dissected): '17.5979' Avg. embryo expression (LCM): '26.0716' |
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| AT4G16807 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.03177 x 10-1 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G16807 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.2942 x 10-2 | 65 | 46 | 58.56% | 111 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |