| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G17270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '28.4106' Avg. expression score in LCM sample: '32.1443' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G17270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '42.5439' Avg. expression score in LCM sample: '32.1443' Tissue used: 'full endosperm' |
|||||||
| AT4G17270 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '44.4779' Avg. embryo expression (LCM): '44.1057' |
||||||
| AT4G17270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17270 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17260 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '52.6779' Avg. expression score in LCM sample: '20.9151' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G17260 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '150.253' Avg. expression score in LCM sample: '20.9151' Tissue used: 'full endosperm' |
|||||||
| AT4G17260 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '130.748' Avg. embryo expression (LCM): '95.307' |
||||||
| AT4G17260 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17260 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17260 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G17250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 1 | 0 | 0.00% | 0.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.448334' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT4G17250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.498621' Avg. embryo expression (LCM): '.540019' |
|||||
| AT4G17250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17245 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.801296' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G17245 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.9789' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT4G17245 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '7.71166' Avg. embryo expression (LCM): '0' |
||||||
| AT4G17245 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17245 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17245 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.50263 x 10-1 | 26 | 9 | 13 | 6 | 74.29% | 31.58% | 35 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.301315' Avg. expression score for this sample: '53.256' Avg. expression score in LCM sample: '15.668' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G17240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.28424 x 10-1 | 7 | 1 | 8 | 1 | 87.50% | 11.11% | 8 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.301315' Avg. expression score for this sample: '24.7425' Avg. expression score in LCM sample: '15.668' Tissue used: 'full endosperm' |
|||||
| AT4G17240 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.503 x 10-3 | 67 | 22 | 15 | 10 | 75.28% | 40.00% | 89 | 25 | TAIR8 |
Avg. embryo expression (dissected): '192.934' Avg. embryo expression (LCM): '121.467' |
||||
| AT4G17240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.2312 x 10-2 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.3079 x 10-2 | 0 | 4 | 0.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17240 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.5578 x 10-2 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17230 | SCL13 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.25177 x 10-1 | 5 | 27 | 1 | 23 | 15.62% | 95.83% | 32 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013844' Avg. expression score for this sample: '614.551' Avg. expression score in LCM sample: '54.5146' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G17230 | SCL13 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.5639 x 10-2 | 25 | 58 | 12 | 66 | 30.12% | 84.62% | 83 | 78 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.013844' Avg. expression score for this sample: '600.296' Avg. expression score in LCM sample: '54.5146' Tissue used: 'full endosperm' |
||||
| AT4G17230 | SCL13 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.11392 x 10-1 | 3 | 21 | 0 | 8 | 12.50% | 100.00% | 24 | 8 | TAIR8 |
Avg. embryo expression (dissected): '357.746' Avg. embryo expression (LCM): '52.7963' |
|||
| AT4G17230 | SCL13 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.4763 x 10-2 | 16 | 3 | 84.21% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17230 | SCL13 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.5 x 10-11 | 45 | 0 | 100.00% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17230 | SCL13 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.87244 x 10-1 | 43 | 30 | 58.90% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17220 | MAP70-5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.314098' Avg. expression score for this sample: '.293704' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT4G17220 | MAP70-5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.14098 x 10-1 | 16 | 4 | 0 | 3 | 80.00% | 100.00% | 20 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.314098' Avg. expression score for this sample: '6.26383' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT4G17220 | MAP70-5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.45455 x 10-1 | 5 | 1 | 0 | 0 | 83.33% | 6 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.89731' Avg. embryo expression (LCM): '0' |
||||
| AT4G17220 | MAP70-5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17220 | MAP70-5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.4549 x 10-2 | 4 | 5 | 44.44% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17220 | MAP70-5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17215 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 2 | 3 | 5 | 50.00% | 62.50% | 4 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01013' Avg. expression score for this sample: '7.98407' Avg. expression score in LCM sample: '101.754' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G17215 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.09 x 10-4 | 8 | 3 | 0 | 39 | 72.73% | 100.00% | 11 | 39 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.01013' Avg. expression score for this sample: '30.4016' Avg. expression score in LCM sample: '101.754' Tissue used: 'full endosperm' |
|||||
| AT4G17215 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.28571 x 10-1 | 0 | 2 | 1 | 0 | 0.00% | 0.00% | 2 | 1 | TAIR8 |
Avg. embryo expression (dissected): '4.71847' Avg. embryo expression (LCM): '0' |
||||
| AT4G17215 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17215 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.98164 x 10-1 | 2179 | 545 | 79.99% | 2724 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17215 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.96 x 10-4 | 358 | 195 | 64.74% | 553 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 0 | 8 | 11 | 100.00% | 57.89% | 3 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.048936' Avg. expression score for this sample: '8.5524' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G17210 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.137 x 10-3 | 0 | 4 | 0 | 42 | 0.00% | 100.00% | 4 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.048936' Avg. expression score for this sample: '11.9882' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT4G17210 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.4117' Avg. embryo expression (LCM): '0' |
||||||
| AT4G17210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17210 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.8643 x 10-2 | 229 | 98 | 70.03% | 327 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17210 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.6231 x 10-1 | 74 | 25 | 74.75% | 99 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '2.57214' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G17200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.291928' Avg. expression score in LCM sample: '2.57214' Tissue used: 'full endosperm' |
|||||||
| AT4G17200 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G17200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G17200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 3 | 76.92% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17200 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17190 | FPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.24503 x 10-1 | 7 | 1 | 1 | 8 | 87.50% | 88.89% | 8 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.381987' Avg. expression score for this sample: '59.5347' Avg. expression score in LCM sample: '33.2761' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G17190 | FPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.97226 x 10-1 | 9 | 2 | 8 | 16 | 81.82% | 66.67% | 11 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.381987' Avg. expression score for this sample: '69.946' Avg. expression score in LCM sample: '33.2761' Tissue used: 'full endosperm' |
||||
| AT4G17190 | FPS2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 5 | 0 | 0 | 58.33% | 12 | 0 | TAIR8 |
Avg. embryo expression (dissected): '86.2504' Avg. embryo expression (LCM): '97.0527' |
||||
| AT4G17190 | FPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.26974 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17190 | FPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17190 | FPS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.60478 x 10-1 | 22 | 3 | 88.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 12 | 9 | 6 | 21 | 57.14% | 77.78% | 21 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004144' Avg. expression score for this sample: '44.5754' Avg. expression score in LCM sample: '29.1901' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G17180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.332 x 10-3 | 56 | 14 | 14 | 79 | 80.00% | 84.95% | 70 | 93 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004144' Avg. expression score for this sample: '61.1587' Avg. expression score in LCM sample: '29.1901' Tissue used: 'full endosperm' |
|||||
| AT4G17180 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 15 | 16 | 1 | 4 | 48.39% | 80.00% | 31 | 5 | TAIR8 |
Avg. embryo expression (dissected): '50.7531' Avg. embryo expression (LCM): '30.8062' |
||||
| AT4G17180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.73911 x 10-1 | 18 | 3 | 85.71% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.95795 x 10-1 | 130 | 31 | 80.75% | 161 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17180 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.80228 x 10-1 | 122 | 39 | 75.78% | 161 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17170 | RABB1C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 109 | 5 | 55 | 9 | 95.61% | 14.06% | 114 | 64 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.109069' Avg. expression score for this sample: '601.667' Avg. expression score in LCM sample: '210.18' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G17170 | RABB1C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.9705 x 10-2 | 376 | 8 | 172 | 80 | 97.92% | 31.75% | 384 | 252 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.109069' Avg. expression score for this sample: '627.965' Avg. expression score in LCM sample: '210.18' Tissue used: 'full endosperm' |
||||
| AT4G17170 | RABB1C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.425 x 10-3 | 39 | 4 | 5 | 0 | 90.70% | 0.00% | 43 | 5 | TAIR8 |
Avg. embryo expression (dissected): '306.853' Avg. embryo expression (LCM): '148.581' |
|||
| AT4G17170 | RABB1C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.9 x 10-11 | 12 | 39 | 23.53% | 51 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17170 | RABB1C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.67787 x 10-1 | 64 | 37 | 63.37% | 101 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17170 | RABB1C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 484 | 8 | 98.37% | 492 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G17160 | RABB1a | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.05289' Avg. expression score in LCM sample: '21.5765' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT4G17160 | RABB1a | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.545281' Avg. expression score in LCM sample: '21.5765' Tissue used: 'full endosperm' |
||||||
| AT4G17160 | RABB1a | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.947214' Avg. embryo expression (LCM): '0' |
|||||
| AT4G17160 | RABB1a | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17160 | RABB1a | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17160 | RABB1a | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.33222 x 10-1 | 7 | 7 | 1 | 3 | 50.00% | 75.00% | 14 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.675188' Avg. expression score for this sample: '159.623' Avg. expression score in LCM sample: '25.4568' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G17150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.82283 x 10-1 | 10 | 6 | 1 | 18 | 62.50% | 94.74% | 16 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.675188' Avg. expression score for this sample: '278.649' Avg. expression score in LCM sample: '25.4568' Tissue used: 'full endosperm' |
|||||
| AT4G17150 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.1024 x 10-1 | 4 | 18 | 4 | 4 | 18.18% | 50.00% | 22 | 8 | TAIR8 |
Avg. embryo expression (dissected): '232.838' Avg. embryo expression (LCM): '110.616' |
||||
| AT4G17150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.22111 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.946 x 10-2 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17150 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5032 x 10-2 | 16 | 0 | 100.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.43078 x 10-1 | 55 | 48 | 18 | 64 | 53.40% | 78.05% | 103 | 82 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.152521' Avg. expression score for this sample: '50.6337' Avg. expression score in LCM sample: '50.0317' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G17140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.5787 x 10-2 | 180 | 72 | 90 | 237 | 71.43% | 72.48% | 252 | 327 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.152521' Avg. expression score for this sample: '110.435' Avg. expression score in LCM sample: '50.0317' Tissue used: 'full endosperm' |
|||||
| AT4G17140 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.98647 x 10-1 | 45 | 63 | 14 | 16 | 41.67% | 53.33% | 108 | 30 | TAIR8 |
Avg. embryo expression (dissected): '52.8803' Avg. embryo expression (LCM): '37.0352' |
||||
| AT4G17140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.86902 x 10-1 | 45 | 18 | 71.43% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-9 | 237 | 32 | 88.10% | 269 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17140 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.8 x 10-22 | 528 | 51 | 91.19% | 579 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G17098 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 2 | 100.00% | 100.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.210526' Avg. expression score for this sample: '14.8246' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G17098 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.54545 x 10-1 | 2 | 0 | 0 | 4 | 100.00% | 100.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.210526' Avg. expression score for this sample: '38.2972' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT4G17098 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '15.085' Avg. embryo expression (LCM): '5.88997' |
|||||
| AT4G17098 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |