| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G19230 | CYP707A1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.04116 x 10-1 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19230 | CYP707A1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.4524 x 10-1 | 11 | 5 | 68.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.27811' Avg. expression score in LCM sample: '3.16005' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19220 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 5 | 0 | 3 | 37.50% | 100.00% | 8 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.18767' Avg. expression score in LCM sample: '3.16005' Tissue used: 'full endosperm' |
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| AT4G19220 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '10.4597' Avg. embryo expression (LCM): '7.18351' |
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| AT4G19220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19220 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.242 x 10-3 | 19 | 0 | 100.00% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19220 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19210 | ABCE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.0612 x 10-1 | 39 | 21 | 26 | 37 | 65.00% | 58.73% | 60 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '131.592' Avg. expression score in LCM sample: '69.4036' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19210 | ABCE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.80097 x 10-1 | 101 | 41 | 42 | 86 | 71.13% | 67.19% | 142 | 128 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '186.644' Avg. expression score in LCM sample: '69.4036' Tissue used: 'full endosperm' |
||||
| AT4G19210 | ABCE2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.78772 x 10-1 | 42 | 41 | 16 | 5 | 50.60% | 23.81% | 83 | 21 | TAIR8 |
Avg. embryo expression (dissected): '238.495' Avg. embryo expression (LCM): '273.224' |
|||
| AT4G19210 | ABCE2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.7596 x 10-2 | 23 | 3 | 88.46% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19210 | ABCE2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 44 | 22 | 66.67% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19210 | ABCE2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.3 x 10-6 | 87 | 11 | 88.78% | 98 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.818 x 10-3 | 12 | 4 | 3 | 47 | 75.00% | 94.00% | 16 | 50 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000023' Avg. expression score for this sample: '993.661' Avg. expression score in LCM sample: '369.344' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.143 x 10-3 | 33 | 13 | 10 | 80 | 71.74% | 88.89% | 46 | 90 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000023' Avg. expression score for this sample: '2434.24' Avg. expression score in LCM sample: '369.344' Tissue used: 'full endosperm' |
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| AT4G19200 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 2 | 3 | 3 | 2 | 40.00% | 40.00% | 5 | 5 | TAIR8 |
Avg. embryo expression (dissected): '219.35' Avg. embryo expression (LCM): '40.0995' |
||||
| AT4G19200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.65583 x 10-1 | 35 | 9 | 79.55% | 44 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.30204 x 10-1 | 138 | 32 | 81.18% | 170 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19200 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.48 x 10-4 | 157 | 63 | 71.36% | 220 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19191 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '22.985' Avg. expression score in LCM sample: '7.48124' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19191 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '30.8352' Avg. expression score in LCM sample: '7.48124' Tissue used: 'full endosperm' |
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| AT4G19191 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '45.3627' Avg. embryo expression (LCM): '39.6474' |
||||||
| AT4G19191 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19191 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19191 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.8084 x 10-1 | 17 | 2 | 4 | 3 | 89.47% | 42.86% | 19 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.248743' Avg. expression score for this sample: '234.748' Avg. expression score in LCM sample: '56.6899' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19190 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.84078 x 10-1 | 15 | 3 | 1 | 2 | 83.33% | 66.67% | 18 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.248743' Avg. expression score for this sample: '278.403' Avg. expression score in LCM sample: '56.6899' Tissue used: 'full endosperm' |
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| AT4G19190 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.72548 x 10-1 | 11 | 4 | 1 | 0 | 73.33% | 0.00% | 15 | 1 | TAIR8 |
Avg. embryo expression (dissected): '196.298' Avg. embryo expression (LCM): '141.648' |
||||
| AT4G19190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.6122 x 10-2 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19190 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.30684 x 10-1 | 6 | 5 | 54.55% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19190 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.653 x 10-2 | 20 | 0 | 100.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19185 | UMAMIT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '37.323' Avg. expression score in LCM sample: '86.3503' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19185 | UMAMIT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '100.105' Avg. expression score in LCM sample: '86.3503' Tissue used: 'full endosperm' |
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| AT4G19185 | UMAMIT2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '99.2632' Avg. embryo expression (LCM): '62.3031' |
||||
| AT4G19185 | UMAMIT2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19185 | UMAMIT2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19185 | UMAMIT2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.08303 x 10-1 | 66 | 29 | 26 | 50 | 69.47% | 65.79% | 95 | 76 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000023' Avg. expression score for this sample: '44.0291' Avg. expression score in LCM sample: '60.2761' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19180 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6 x 10-6 | 230 | 43 | 68 | 205 | 84.25% | 75.09% | 273 | 273 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000023' Avg. expression score for this sample: '84.9133' Avg. expression score in LCM sample: '60.2761' Tissue used: 'full endosperm' |
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| AT4G19180 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.54633 x 10-1 | 67 | 57 | 18 | 17 | 54.03% | 48.57% | 124 | 35 | TAIR8 |
Avg. embryo expression (dissected): '72.4812' Avg. embryo expression (LCM): '61.3863' |
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| AT4G19180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.74202 x 10-1 | 47 | 13 | 78.33% | 60 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19180 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.9 x 10-6 | 530 | 81 | 86.74% | 611 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19180 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.7 x 10-28 | 877 | 46 | 95.02% | 923 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19170 | NCED4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.56506 x 10-1 | 29 | 10 | 27 | 25 | 74.36% | 48.08% | 39 | 52 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.076284' Avg. expression score for this sample: '21.3476' Avg. expression score in LCM sample: '16.3294' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19170 | NCED4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.29 x 10-4 | 76 | 3 | 9 | 19 | 96.20% | 67.86% | 79 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.076284' Avg. expression score for this sample: '16.3931' Avg. expression score in LCM sample: '16.3294' Tissue used: 'full endosperm' |
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| AT4G19170 | NCED4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.0729 x 10-2 | 9 | 1 | 2 | 5 | 90.00% | 71.43% | 10 | 7 | TAIR8 |
Avg. embryo expression (dissected): '3.74187' Avg. embryo expression (LCM): '0' |
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| AT4G19170 | NCED4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.38442 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19170 | NCED4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-6 | 9 | 21 | 30.00% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19170 | NCED4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.91 x 10-4 | 44 | 1 | 97.78% | 45 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19160 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.3368 x 10-2 | 286 | 200 | 183 | 659 | 58.85% | 78.27% | 486 | 842 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005038' Avg. expression score for this sample: '557.437' Avg. expression score in LCM sample: '497.936' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19160 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.24355 x 10-1 | 313 | 218 | 260 | 765 | 58.95% | 74.63% | 531 | 1025 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005038' Avg. expression score for this sample: '443.239' Avg. expression score in LCM sample: '497.936' Tissue used: 'full endosperm' |
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| AT4G19160 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.50829 x 10-1 | 88 | 115 | 27 | 27 | 43.35% | 50.00% | 203 | 54 | TAIR8 |
Avg. embryo expression (dissected): '180.734' Avg. embryo expression (LCM): '189.094' |
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| AT4G19160 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.44508 x 10-1 | 127 | 45 | 73.84% | 172 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19160 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-10 | 145 | 13 | 91.77% | 158 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19160 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.4 x 10-14 | 213 | 20 | 91.42% | 233 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.25177 x 10-1 | 12 | 20 | 8 | 16 | 37.50% | 66.67% | 32 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '111.686' Avg. expression score in LCM sample: '76.1646' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.0103 x 10-1 | 31 | 12 | 18 | 59 | 72.09% | 76.62% | 43 | 77 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '128.058' Avg. expression score in LCM sample: '76.1646' Tissue used: 'full endosperm' |
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| AT4G19150 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.69982 x 10-1 | 17 | 24 | 7 | 7 | 41.46% | 50.00% | 41 | 14 | TAIR8 |
Avg. embryo expression (dissected): '131.96' Avg. embryo expression (LCM): '143.419' |
||||
| AT4G19150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.8798 x 10-2 | 15 | 2 | 88.24% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0479 x 10-2 | 76 | 17 | 81.72% | 93 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19150 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.47956 x 10-1 | 48 | 20 | 70.59% | 68 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 2 | 4 | 8 | 80.00% | 66.67% | 10 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.897878' Avg. expression score for this sample: '47.6677' Avg. expression score in LCM sample: '18.5635' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 29 | 10 | 28 | 49 | 74.36% | 63.64% | 39 | 77 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.897878' Avg. expression score for this sample: '160.41' Avg. expression score in LCM sample: '18.5635' Tissue used: 'full endosperm' |
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| AT4G19140 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.96004 x 10-1 | 4 | 12 | 0 | 1 | 25.00% | 100.00% | 16 | 1 | TAIR8 |
Avg. embryo expression (dissected): '35.0905' Avg. embryo expression (LCM): '34.8877' |
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| AT4G19140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.3859 x 10-2 | 2 | 5 | 28.57% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.7096 x 10-2 | 30 | 5 | 85.71% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19140 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.0 x 10-6 | 68 | 4 | 94.44% | 72 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19130 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.4279 | 16 | 18 | 5 | 15 | 47.06% | 75.00% | 34 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.52005' Avg. expression score for this sample: '21.5457' Avg. expression score in LCM sample: '40.0812' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19130 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.6934 x 10-2 | 35 | 3 | 15 | 30 | 92.11% | 66.67% | 38 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.52005' Avg. expression score for this sample: '20.4547' Avg. expression score in LCM sample: '40.0812' Tissue used: 'full endosperm' |
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| AT4G19130 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.63858 x 10-1 | 32 | 28 | 4 | 4 | 53.33% | 50.00% | 60 | 8 | TAIR8 |
Avg. embryo expression (dissected): '39.397' Avg. embryo expression (LCM): '56.4006' |
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| AT4G19130 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.22522 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19130 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 58 | 24 | 70.73% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19130 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.0829 x 10-2 | 64 | 12 | 84.21% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19120 | ERD3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.922 x 10-3 | 56 | 3 | 17 | 46 | 94.92% | 73.02% | 59 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.4e-12' Avg. expression score for this sample: '13.906' Avg. expression score in LCM sample: '1.21993' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19120 | ERD3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.5 x 10-11 | 70 | 3 | 10 | 108 | 95.89% | 91.53% | 73 | 118 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.4e-12' Avg. expression score for this sample: '15.3118' Avg. expression score in LCM sample: '1.21993' Tissue used: 'full endosperm' |
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| AT4G19120 | ERD3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.0396 x 10-2 | 31 | 23 | 8 | 22 | 57.41% | 73.33% | 54 | 30 | TAIR8 |
Avg. embryo expression (dissected): '15.4695' Avg. embryo expression (LCM): '9.43149' |
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| AT4G19120 | ERD3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 21 | 2 | 91.30% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19120 | ERD3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.22233 x 10-1 | 503 | 64 | 88.71% | 567 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19120 | ERD3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.77 x 10-4 | 581 | 25 | 95.87% | 606 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19112 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.7619 x 10-2 | 63 | 22 | 15 | 62 | 74.12% | 80.52% | 85 | 77 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000035' Avg. expression score for this sample: '494.21' Avg. expression score in LCM sample: '545.043' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19112 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.66 x 10-4 | 159 | 54 | 58 | 215 | 74.65% | 78.75% | 213 | 273 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000035' Avg. expression score for this sample: '1174.81' Avg. expression score in LCM sample: '545.043' Tissue used: 'full endosperm' |
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| AT4G19112 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.0782 | 37 | 19 | 9 | 14 | 66.07% | 60.87% | 56 | 23 | TAIR8 |
Avg. embryo expression (dissected): '423.238' Avg. embryo expression (LCM): '313.964' |
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| AT4G19112 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.5238 x 10-1 | 36 | 7 | 83.72% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19112 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.866 x 10-3 | 208 | 34 | 85.95% | 242 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19112 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.5 x 10-16 | 329 | 15 | 95.64% | 344 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.10879 x 10-1 | 67 | 14 | 38 | 66 | 82.72% | 63.46% | 81 | 104 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000057' Avg. expression score for this sample: '1920.02' Avg. expression score in LCM sample: '612.418' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19110 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.5 x 10-5 | 132 | 34 | 48 | 193 | 79.52% | 80.08% | 166 | 241 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000057' Avg. expression score for this sample: '1671' Avg. expression score in LCM sample: '612.418' Tissue used: 'full endosperm' |
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| AT4G19110 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.2191 x 10-1 | 34 | 17 | 8 | 10 | 66.67% | 55.56% | 51 | 18 | TAIR8 |
Avg. embryo expression (dissected): '1229.79' Avg. embryo expression (LCM): '664.562' |
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| AT4G19110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.88917 x 10-1 | 31 | 7 | 81.58% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19110 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.09168 x 10-1 | 166 | 34 | 83.00% | 200 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19110 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-10 | 312 | 23 | 93.13% | 335 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19100 | PAM68 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '105.239' Avg. expression score in LCM sample: '15.1095' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19100 | PAM68 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '46.3297' Avg. expression score in LCM sample: '15.1095' Tissue used: 'full endosperm' |
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| AT4G19100 | PAM68 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '495.428' Avg. embryo expression (LCM): '402.025' |
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| AT4G19100 | PAM68 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19100 | PAM68 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19100 | PAM68 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19095 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.95512' Avg. expression score in LCM sample: '10.0681' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19095 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.27786' Avg. expression score in LCM sample: '10.0681' Tissue used: 'full endosperm' |