| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G19580 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G19580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19580 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19580 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.14098 x 10-1 | 4 | 2 | 2 | 15 | 66.67% | 88.24% | 6 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003898' Avg. expression score for this sample: '4.65819' Avg. expression score in LCM sample: '3.89495' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19570 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.935 x 10-3 | 25 | 4 | 2 | 23 | 86.21% | 92.00% | 29 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.003898' Avg. expression score for this sample: '6.71078' Avg. expression score in LCM sample: '3.89495' Tissue used: 'full endosperm' |
|||||
| AT4G19570 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 0 | 3 | 0 | 0 | 0.00% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.854709' Avg. embryo expression (LCM): '0' |
|||||
| AT4G19570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19570 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0232 x 10-2 | 39 | 19 | 67.24% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19570 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.071 x 10-3 | 37 | 18 | 67.27% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19560 | CYCT1;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.99001 x 10-1 | 28 | 32 | 10 | 69 | 46.67% | 87.34% | 60 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '20.7436' Avg. expression score in LCM sample: '2.38106' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19560 | CYCT1;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.83237 x 10-1 | 49 | 65 | 27 | 124 | 42.98% | 82.12% | 114 | 151 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '28.5809' Avg. expression score in LCM sample: '2.38106' Tissue used: 'full endosperm' |
||||
| AT4G19560 | CYCT1;2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.493 x 10-3 | 13 | 68 | 5 | 18 | 16.05% | 78.26% | 81 | 23 | TAIR8 |
Avg. embryo expression (dissected): '25.3432' Avg. embryo expression (LCM): '19.6165' |
|||
| AT4G19560 | CYCT1;2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.19679 x 10-1 | 10 | 8 | 55.56% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19560 | CYCT1;2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.00074 x 10-1 | 67 | 21 | 76.14% | 88 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19560 | CYCT1;2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.783 x 10-3 | 47 | 8 | 85.45% | 55 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.10382 x 10-1 | 2 | 3 | 4 | 6 | 40.00% | 60.00% | 5 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.637136' Avg. expression score for this sample: '10.5092' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 4 | 5 | 4 | 10 | 44.44% | 71.43% | 9 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.637136' Avg. expression score for this sample: '15.2637' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT4G19550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.46965 x 10-1 | 7 | 4 | 0 | 1 | 63.64% | 100.00% | 11 | 1 | TAIR8 |
Avg. embryo expression (dissected): '13.019' Avg. embryo expression (LCM): '9.44405' |
||||
| AT4G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.07692 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.21348 x 10-1 | 18 | 10 | 64.29% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.2946 x 10-2 | 20 | 3 | 86.96% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19540 | INDH | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 21 | 13 | 17 | 40 | 61.76% | 70.18% | 34 | 57 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.72851' Avg. expression score for this sample: '37.0604' Avg. expression score in LCM sample: '17.0496' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT4G19540 | INDH | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.54742 x 10-1 | 62 | 33 | 33 | 83 | 65.26% | 71.55% | 95 | 116 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.72851' Avg. expression score for this sample: '55.2416' Avg. expression score in LCM sample: '17.0496' Tissue used: 'full endosperm' |
||||
| AT4G19540 | INDH | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.72808 x 10-1 | 28 | 34 | 7 | 9 | 45.16% | 56.25% | 62 | 16 | TAIR8 |
Avg. embryo expression (dissected): '39.4414' Avg. embryo expression (LCM): '42.6615' |
|||
| AT4G19540 | INDH | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.6071 x 10-1 | 16 | 9 | 64.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19540 | INDH | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.96239 x 10-1 | 37 | 24 | 60.66% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19540 | INDH | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.597 x 10-3 | 64 | 12 | 84.21% | 76 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.77157 x 10-1 | 9 | 3 | 0 | 9 | 75.00% | 100.00% | 12 | 9 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.30951' Avg. expression score for this sample: '4.16184' Avg. expression score in LCM sample: '5.26185' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 10 | 2 | 3 | 4 | 83.33% | 57.14% | 12 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.30951' Avg. expression score for this sample: '3.08462' Avg. expression score in LCM sample: '5.26185' Tissue used: 'full endosperm' |
|||||
| AT4G19530 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.942675' Avg. embryo expression (LCM): '0' |
|||||
| AT4G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.70589 x 10-1 | 7 | 3 | 70.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19530 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.384541' Avg. expression score for this sample: '10.1138' Avg. expression score in LCM sample: '1.29342' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19520 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.40405 x 10-1 | 3 | 1 | 1 | 7 | 75.00% | 87.50% | 4 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.384541' Avg. expression score for this sample: '30.4919' Avg. expression score in LCM sample: '1.29342' Tissue used: 'full endosperm' |
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| AT4G19520 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '12.2571' Avg. embryo expression (LCM): '.364199' |
||||||
| AT4G19520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19520 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19520 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.0226 x 10-2 | 8 | 0 | 0 | 3 | 100.00% | 100.00% | 8 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.1e-07' Avg. expression score for this sample: '3.05208' Avg. expression score in LCM sample: '.764292' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3 x 10-6 | 116 | 10 | 15 | 53 | 92.06% | 77.94% | 126 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '5.1e-07' Avg. expression score for this sample: '26.757' Avg. expression score in LCM sample: '.764292' Tissue used: 'full endosperm' |
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| AT4G19515 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.93027 x 10-1 | 8 | 2 | 0 | 1 | 80.00% | 100.00% | 10 | 1 | TAIR8 |
Avg. embryo expression (dissected): '2.99455' Avg. embryo expression (LCM): '0' |
||||
| AT4G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.292 x 10-3 | 7 | 6 | 53.85% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.16951 x 10-1 | 7 | 2 | 77.78% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19515 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.14636 x 10-1 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19512 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.21165' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19512 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.68305' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G19512 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.35033' Avg. embryo expression (LCM): '0' |
||||||
| AT4G19512 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19512 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19512 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.76471 x 10-1 | 8 | 1 | 0 | 0 | 88.89% | 9 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.381654' Avg. expression score for this sample: '6.16741' Avg. expression score in LCM sample: '3.10126' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19510 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.33718 x 10-1 | 15 | 1 | 4 | 1 | 93.75% | 20.00% | 16 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.381654' Avg. expression score for this sample: '11.1283' Avg. expression score in LCM sample: '3.10126' Tissue used: 'full endosperm' |
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| AT4G19510 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.8707 x 10-2 | 18 | 1 | 4 | 0 | 94.74% | 0.00% | 19 | 4 | TAIR8 |
Avg. embryo expression (dissected): '13.5523' Avg. embryo expression (LCM): '8.2761' |
||||
| AT4G19510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.5396 x 10-2 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19510 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.321 x 10-3 | 1 | 6 | 14.29% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19510 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.6591 x 10-2 | 25 | 0 | 100.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.29563 x 10-1 | 22 | 0 | 15 | 0 | 100.00% | 0.00% | 22 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.3553' Avg. expression score for this sample: '14.3956' Avg. expression score in LCM sample: '13.4927' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.28235 x 10-1 | 52 | 1 | 33 | 1 | 98.11% | 2.94% | 53 | 34 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.3553' Avg. expression score for this sample: '31.0256' Avg. expression score in LCM sample: '13.4927' Tissue used: 'full endosperm' |
|||||
| AT4G19500 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.307 x 10-3 | 35 | 2 | 5 | 0 | 94.59% | 0.00% | 37 | 5 | TAIR8 |
Avg. embryo expression (dissected): '22.9079' Avg. embryo expression (LCM): '24.0246' |
||||
| AT4G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.078 x 10-3 | 0 | 7 | 0.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.4 x 10-12 | 0 | 34 | 0.00% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19500 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.3 x 10-15 | 94 | 0 | 100.00% | 94 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19490 | VPS54 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.83623 x 10-1 | 105 | 52 | 39 | 105 | 66.88% | 72.92% | 157 | 144 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000308' Avg. expression score for this sample: '71.8487' Avg. expression score in LCM sample: '91.7444' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19490 | VPS54 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.77 x 10-4 | 261 | 91 | 120 | 371 | 74.15% | 75.56% | 352 | 491 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000308' Avg. expression score for this sample: '112.641' Avg. expression score in LCM sample: '91.7444' Tissue used: 'full endosperm' |
||||
| AT4G19490 | VPS54 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.52697 x 10-1 | 75 | 86 | 33 | 38 | 46.58% | 53.52% | 161 | 71 | TAIR8 |
Avg. embryo expression (dissected): '84.2019' Avg. embryo expression (LCM): '52.2562' |
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| AT4G19490 | VPS54 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.08143 x 10-1 | 68 | 26 | 72.34% | 94 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19490 | VPS54 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.4 x 10-6 | 601 | 125 | 82.78% | 726 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19490 | VPS54 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-21 | 714 | 75 | 90.49% | 789 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G19480 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19480 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.204968' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.400788' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G19470 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19470 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.37035 x 10-1 | 3814 | 3237 | 1737 | 6428 | 54.09% | 78.73% | 7051 | 8165 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.263189' Avg. expression score for this sample: '1313.84' Avg. expression score in LCM sample: '1440.32' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.54706 x 10-1 | 1268 | 834 | 970 | 2371 | 60.32% | 70.97% | 2102 | 3341 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.263189' Avg. expression score for this sample: '463.826' Avg. expression score in LCM sample: '1440.32' Tissue used: 'full endosperm' |
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| AT4G19460 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.3 x 10-8 | 172 | 126 | 38 | 164 | 57.72% | 81.19% | 298 | 202 | TAIR8 |
Avg. embryo expression (dissected): '77.3877' Avg. embryo expression (LCM): '37.0227' |
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| AT4G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.266 x 10-2 | 476 | 193 | 71.15% | 669 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6594 x 10-2 | 1 | 5 | 16.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19460 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.36 x 10-4 | 92 | 19 | 82.88% | 111 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.61266 x 10-1 | 252 | 53 | 161 | 209 | 82.62% | 56.49% | 305 | 370 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.280545' Avg. expression score for this sample: '381.398' Avg. expression score in LCM sample: '232.198' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.84515 x 10-1 | 526 | 146 | 275 | 382 | 78.27% | 58.14% | 672 | 657 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.280545' Avg. expression score for this sample: '369.19' Avg. expression score in LCM sample: '232.198' Tissue used: 'full endosperm' |
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| AT4G19450 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.58074 x 10-1 | 39 | 29 | 13 | 11 | 57.35% | 45.83% | 68 | 24 | TAIR8 |
Avg. embryo expression (dissected): '73.8837' Avg. embryo expression (LCM): '59.5904' |
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| AT4G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.3 x 10-8 | 116 | 116 | 50.00% | 232 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.0 x 10-9 | 203 | 33 | 86.02% | 236 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19450 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 756 | 8 | 98.95% | 764 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.37012 x 10-1 | 102 | 45 | 71 | 163 | 69.39% | 69.66% | 147 | 234 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.006377' Avg. expression score for this sample: '42.2682' Avg. expression score in LCM sample: '55.6904' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.436 x 10-3 | 373 | 98 | 189 | 372 | 79.19% | 66.31% | 471 | 561 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.006377' Avg. expression score for this sample: '82.2166' Avg. expression score in LCM sample: '55.6904' Tissue used: 'full endosperm' |
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| AT4G19440 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.2205 x 10-1 | 198 | 157 | 66 | 64 | 55.77% | 49.23% | 355 | 130 | TAIR8 |
Avg. embryo expression (dissected): '87.5219' Avg. embryo expression (LCM): '89.1408' |
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| AT4G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.04147 x 10-1 | 61 | 35 | 63.54% | 96 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.301 x 10-3 | 592 | 177 | 76.98% | 769 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G19440 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.0 x 10-30 | 1276 | 168 | 88.37% | 1444 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |