| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G22350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 2 | 1 | 3 | 33.33% | 75.00% | 3 | 4 | TAIR8 |
Avg. embryo expression (dissected): '125.012' Avg. embryo expression (LCM): '101.674' |
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| AT4G22350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.16103 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.81431 x 10-1 | 19 | 4 | 82.61% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22340 | CDS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 1 | 0 | 66.67% | 0.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '17.2364' Avg. expression score in LCM sample: '7.31956' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22340 | CDS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 11 | 3 | 14 | 23 | 78.57% | 62.16% | 14 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '32.6058' Avg. expression score in LCM sample: '7.31956' Tissue used: 'full endosperm' |
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| AT4G22340 | CDS2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '20.729' Avg. embryo expression (LCM): '11.7297' |
||||
| AT4G22340 | CDS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.6151 x 10-2 | 1 | 4 | 20.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22340 | CDS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.17571 x 10-1 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22340 | CDS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 13 | 6 | 68.42% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22330 | ATCES1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '234.96' Avg. expression score in LCM sample: '144.348' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G22330 | ATCES1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 9 | 1 | 9 | 9 | 90.00% | 50.00% | 10 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '232.158' Avg. expression score in LCM sample: '144.348' Tissue used: 'full endosperm' |
||||
| AT4G22330 | ATCES1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '283.037' Avg. embryo expression (LCM): '128.01' |
||||
| AT4G22330 | ATCES1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.43124 x 10-1 | 3 | 5 | 37.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22330 | ATCES1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.46821 x 10-1 | 7 | 8 | 46.67% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22330 | ATCES1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.89093 x 10-1 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.21608 x 10-1 | 385 | 224 | 221 | 415 | 63.22% | 65.25% | 609 | 636 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.212002' Avg. expression score for this sample: '377.863' Avg. expression score in LCM sample: '123.301' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G22320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.502 x 10-3 | 448 | 114 | 219 | 435 | 79.72% | 66.51% | 562 | 654 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.212002' Avg. expression score for this sample: '341.782' Avg. expression score in LCM sample: '123.301' Tissue used: 'full endosperm' |
|||||
| AT4G22320 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.04103 x 10-1 | 487 | 478 | 138 | 137 | 50.47% | 49.82% | 965 | 275 | TAIR8 |
Avg. embryo expression (dissected): '561.553' Avg. embryo expression (LCM): '471.7' |
||||
| AT4G22320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-6 | 112 | 16 | 87.50% | 128 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.5 x 10-9 | 1057 | 712 | 59.75% | 1769 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22320 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1523 | 249 | 85.95% | 1772 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.48473 x 10-1 | 23 | 4 | 5 | 6 | 85.19% | 54.55% | 27 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.035863' Avg. expression score for this sample: '84.6681' Avg. expression score in LCM sample: '40.9484' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.315 x 10-2 | 153 | 4 | 60 | 36 | 97.45% | 37.50% | 157 | 96 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.035863' Avg. expression score for this sample: '169.523' Avg. expression score in LCM sample: '40.9484' Tissue used: 'full endosperm' |
|||||
| AT4G22310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.18311 x 10-1 | 41 | 13 | 11 | 3 | 75.93% | 21.43% | 54 | 14 | TAIR8 |
Avg. embryo expression (dissected): '232.682' Avg. embryo expression (LCM): '143.632' |
||||
| AT4G22310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.1078 x 10-1 | 14 | 8 | 63.64% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-5 | 67 | 60 | 52.76% | 127 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22310 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-28 | 463 | 4 | 99.14% | 467 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22300 | SOBER1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.63178' Avg. expression score in LCM sample: '5.05608' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22300 | SOBER1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.4 | 0 | 1 | 2 | 0 | 0.00% | 0.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '26.2329' Avg. expression score in LCM sample: '5.05608' Tissue used: 'full endosperm' |
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| AT4G22300 | SOBER1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 0 | 0 | 75.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '29.5892' Avg. embryo expression (LCM): '25.9209' |
||||
| AT4G22300 | SOBER1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22300 | SOBER1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.0606 x 10-2 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22300 | SOBER1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.0606 x 10-2 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.75211 x 10-1 | 234 | 62 | 86 | 124 | 79.05% | 59.05% | 296 | 210 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000021' Avg. expression score for this sample: '215.636' Avg. expression score in LCM sample: '53.1624' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22290 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3 x 10-5 | 336 | 79 | 79 | 203 | 80.96% | 71.99% | 415 | 282 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000021' Avg. expression score for this sample: '294.624' Avg. expression score in LCM sample: '53.1624' Tissue used: 'full endosperm' |
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| AT4G22290 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.01743 x 10-1 | 161 | 107 | 85 | 57 | 60.07% | 40.14% | 268 | 142 | TAIR8 |
Avg. embryo expression (dissected): '280.763' Avg. embryo expression (LCM): '142.151' |
||||
| AT4G22290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.33703 x 10-1 | 77 | 23 | 77.00% | 100 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22290 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.2 x 10-26 | 265 | 3 | 98.88% | 268 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22290 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 783 | 9 | 98.86% | 792 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22285 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.64576 x 10-1 | 278 | 319 | 130 | 728 | 46.57% | 84.85% | 597 | 858 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00007' Avg. expression score for this sample: '239.355' Avg. expression score in LCM sample: '87.0998' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22285 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.3 x 10-5 | 398 | 350 | 186 | 1022 | 53.21% | 84.60% | 748 | 1208 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00007' Avg. expression score for this sample: '239.927' Avg. expression score in LCM sample: '87.0998' Tissue used: 'full endosperm' |
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| AT4G22285 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.3652 x 10-2 | 271 | 595 | 75 | 286 | 31.29% | 79.22% | 866 | 361 | TAIR8 |
Avg. embryo expression (dissected): '296.735' Avg. embryo expression (LCM): '243.674' |
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| AT4G22285 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.3 x 10-6 | 212 | 41 | 83.79% | 253 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22285 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-26 | 1235 | 216 | 85.11% | 1451 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22285 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.2184 x 10-2 | 763 | 260 | 74.58% | 1023 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.12282 x 10-1 | 5 | 11 | 3 | 14 | 31.25% | 82.35% | 16 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.367299' Avg. expression score for this sample: '16.1403' Avg. expression score in LCM sample: '15.9472' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22280 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.8852 x 10-2 | 11 | 13 | 1 | 48 | 45.83% | 97.96% | 24 | 49 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.367299' Avg. expression score for this sample: '29.0358' Avg. expression score in LCM sample: '15.9472' Tissue used: 'full endosperm' |
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| AT4G22280 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.43374 x 10-1 | 4 | 12 | 2 | 4 | 25.00% | 66.67% | 16 | 6 | TAIR8 |
Avg. embryo expression (dissected): '19.8849' Avg. embryo expression (LCM): '21.2868' |
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| AT4G22280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.96388 x 10-1 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22280 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.55263 x 10-1 | 48 | 15 | 76.19% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22280 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.11006 x 10-1 | 48 | 8 | 85.71% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22270 | MRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.07283 x 10-1 | 1 | 3 | 5 | 30 | 25.00% | 85.71% | 4 | 35 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002284' Avg. expression score for this sample: '20.4857' Avg. expression score in LCM sample: '11.4791' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22270 | MRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.085 x 10-3 | 23 | 6 | 7 | 53 | 79.31% | 88.33% | 29 | 60 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002284' Avg. expression score for this sample: '41.4427' Avg. expression score in LCM sample: '11.4791' Tissue used: 'full endosperm' |
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| AT4G22270 | MRB1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 9 | 4 | 9 | 35.71% | 69.23% | 14 | 13 | TAIR8 |
Avg. embryo expression (dissected): '24.4182' Avg. embryo expression (LCM): '14.1535' |
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| AT4G22270 | MRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22270 | MRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.09224 x 10-1 | 35 | 2 | 94.59% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22270 | MRB1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.26971 x 10-1 | 25 | 1 | 96.15% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22265 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G22265 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G22265 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT4G22265 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G22265 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G22265 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G22260 | IM | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.48944 x 10-1 | 26 | 7 | 10 | 23 | 78.79% | 69.70% | 33 | 33 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002566' Avg. expression score for this sample: '26.7903' Avg. expression score in LCM sample: '12.3756' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22260 | IM | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.398 x 10-3 | 52 | 9 | 15 | 61 | 85.25% | 80.26% | 61 | 76 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.002566' Avg. expression score for this sample: '60.5273' Avg. expression score in LCM sample: '12.3756' Tissue used: 'full endosperm' |
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| AT4G22260 | IM | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.74862 x 10-1 | 13 | 14 | 11 | 3 | 48.15% | 21.43% | 27 | 14 | TAIR8 |
Avg. embryo expression (dissected): '37.4353' Avg. embryo expression (LCM): '39.6349' |
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| AT4G22260 | IM | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.87066 x 10-1 | 17 | 6 | 73.91% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22260 | IM | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.2432 x 10-2 | 76 | 10 | 88.37% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22260 | IM | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.31 x 10-4 | 110 | 6 | 94.83% | 116 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G22250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.9381 x 10-2 | 116 | 73 | 88 | 120 | 61.38% | 57.69% | 189 | 208 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015561' Avg. expression score for this sample: '382.51' Avg. expression score in LCM sample: '237.915' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.36136 x 10-1 | 40 | 25 | 62 | 95 | 61.54% | 60.51% | 65 | 157 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.015561' Avg. expression score for this sample: '133.393' Avg. expression score in LCM sample: '237.915' Tissue used: 'full endosperm' |
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| AT4G22250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.64318 x 10-1 | 69 | 70 | 20 | 11 | 49.64% | 35.48% | 139 | 31 | TAIR8 |
Avg. embryo expression (dissected): '245.77' Avg. embryo expression (LCM): '320.985' |
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| AT4G22250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-5 | 0 | 12 | 0.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.2458 x 10-2 | 1 | 5 | 16.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.5301 x 10-1 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.41255 x 10-1 | 17 | 10 | 10 | 18 | 62.96% | 64.29% | 27 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.270886' Avg. expression score for this sample: '86.708' Avg. expression score in LCM sample: '29.5281' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22240 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.14741 x 10-1 | 53 | 23 | 11 | 52 | 69.74% | 82.54% | 76 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.270886' Avg. expression score for this sample: '86.6438' Avg. expression score in LCM sample: '29.5281' Tissue used: 'full endosperm' |
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| AT4G22240 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.33147 x 10-1 | 20 | 13 | 8 | 4 | 60.61% | 33.33% | 33 | 12 | TAIR8 |
Avg. embryo expression (dissected): '103.661' Avg. embryo expression (LCM): '91.2255' |
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| AT4G22240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.30742 x 10-1 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22240 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0929 x 10-2 | 80 | 13 | 86.02% | 93 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22240 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.55 x 10-4 | 150 | 21 | 87.72% | 171 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22235 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0003 | 65 | 84 | 31 | 48 | 43.62% | 60.76% | 149 | 79 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.6e-20' Avg. expression score for this sample: '284.088' Avg. expression score in LCM sample: '9.59774' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22235 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.5 x 10-19 | 87 | 224 | 34 | 54 | 27.97% | 61.36% | 311 | 88 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.6e-20' Avg. expression score for this sample: '274.171' Avg. expression score in LCM sample: '9.59774' Tissue used: 'full endosperm' |
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| AT4G22235 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.0 x 10-9 | 581 | 1136 | 145 | 315 | 33.84% | 68.48% | 1717 | 460 | TAIR8 |
Avg. embryo expression (dissected): '3433.78' Avg. embryo expression (LCM): '862.51' |
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| AT4G22235 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.30839 x 10-1 | 6 | 4 | 60.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22235 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22235 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.86037 x 10-1 | 6 | 13 | 31.58% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22233 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 1 | 1 | 50.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.33815' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22233 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.70785' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G22233 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.6842 x 10-2 | 1 | 8 | 3 | 1 | 11.11% | 25.00% | 9 | 4 | TAIR8 |
Avg. embryo expression (dissected): '105.582' Avg. embryo expression (LCM): '35.3775' |
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| AT4G22233 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22233 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22233 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G22230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 5 | 4 | 0 | 1 | 55.56% | 100.00% | 9 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '10.836' Avg. expression score in LCM sample: '9.53895' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G22230 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 0 | 3 | 0.00% | 100.00% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.80273' Avg. expression score in LCM sample: '9.53895' Tissue used: 'full endosperm' |
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| AT4G22230 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.42 x 10-4 | 4 | 33 | 1 | 0 | 10.81% | 0.00% | 37 | 1 | TAIR8 |
Avg. embryo expression (dissected): '76.182' Avg. embryo expression (LCM): '44.8467' |
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| AT4G22230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G22230 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G22230 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |