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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT4G25880 PUM6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 9.5605 x 10-2 17 1 4 15 94.44% 78.95% 18 19 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.075221'
Avg. expression score for this sample: '94.9677'
Avg. expression score in LCM sample: '33.7758'
Tissue used: 'full endosperm'
AT4G25880 PUM6 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 9 10 1 2 47.37% 66.67% 19 3 TAIR8 Avg. embryo expression (dissected): '141.441'
Avg. embryo expression (LCM): '207.656'
AT4G25880 PUM6 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25880 PUM6 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.41752 x 10-1 42 4 91.30% 46 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25870 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.5 x 10-15 638 27 95.94% 665 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25870 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.5 x 10-6 108 29 16 132 78.83% 89.19% 137 148 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '4.1e-12'
Avg. expression score for this sample: '74.3259'
Avg. expression score in LCM sample: '45.9604'
Tissue used: 'pure endosperm, no chalazal'
AT4G25870 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.1 x 10-7 117 34 36 206 77.48% 85.12% 151 242 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '4.1e-12'
Avg. expression score for this sample: '81.249'
Avg. expression score in LCM sample: '45.9604'
Tissue used: 'full endosperm'
AT4G25870 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.30927 x 10-1 59 44 15 18 57.28% 54.55% 103 33 TAIR8 Avg. embryo expression (dissected): '59.9947'
Avg. embryo expression (LCM): '87.7342'
AT4G25870 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.5602 x 10-2 88 8 91.67% 96 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25870 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.7 x 10-29 1253 32 97.51% 1285 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25860 ORP4A endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.52 9 0 100.00% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25860 ORP4A endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 1 0 2 50.00% 100.00% 2 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.394389'
Avg. expression score for this sample: '.820497'
Avg. expression score in LCM sample: '3.48341'
Tissue used: 'pure endosperm, no chalazal'
AT4G25860 ORP4A endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.1677 x 10-1 2 0 1 9 100.00% 90.00% 2 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.394389'
Avg. expression score for this sample: '2.67508'
Avg. expression score in LCM sample: '3.48341'
Tissue used: 'full endosperm'
AT4G25860 ORP4A embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.8707 x 10-2 3 15 3 2 16.67% 40.00% 18 5 TAIR8 Avg. embryo expression (dissected): '7.89148'
Avg. embryo expression (LCM): '2.97638'
AT4G25860 ORP4A endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25860 ORP4A endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.46341 x 10-1 25 0 100.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25850 ORP4B endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25850 ORP4B endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '2.38536'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G25850 ORP4B endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '13.9489'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G25850 ORP4B embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '4.28964'
Avg. embryo expression (LCM): '13.0735'
AT4G25850 ORP4B endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25850 ORP4B endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25845 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25845 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G25845 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.702845'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G25845 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT4G25845 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25845 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25840 GPP1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.5 x 10-8 99 1 99.00% 100 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25840 GPP1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.31245 x 10-1 22 9 14 31 70.97% 68.89% 31 45 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.054481'
Avg. expression score for this sample: '38.9291'
Avg. expression score in LCM sample: '38.582'
Tissue used: 'pure endosperm, no chalazal'
AT4G25840 GPP1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.6025 x 10-2 50 14 9 42 78.12% 82.35% 64 51 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.054481'
Avg. expression score for this sample: '57.6868'
Avg. expression score in LCM sample: '38.582'
Tissue used: 'full endosperm'
AT4G25840 GPP1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 7 3 6 3 70.00% 33.33% 10 9 TAIR8 Avg. embryo expression (dissected): '23.3748'
Avg. embryo expression (LCM): '28.5708'
AT4G25840 GPP1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.56842 x 10-1 21 4 84.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25840 GPP1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.00084 x 10-1 27 3 90.00% 30 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25835 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.66718 x 10-1 54 27 66.67% 81 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25835 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 10 4 5 7 71.43% 58.33% 14 12 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.402304'
Avg. expression score for this sample: '18.4065'
Avg. expression score in LCM sample: '30.2042'
Tissue used: 'pure endosperm, no chalazal'
AT4G25835 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.27106 x 10-1 35 14 34 41 71.43% 54.67% 49 75 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.402304'
Avg. expression score for this sample: '41.5782'
Avg. expression score in LCM sample: '30.2042'
Tissue used: 'full endosperm'
AT4G25835 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.11679 x 10-1 23 25 14 8 47.92% 36.36% 48 22 TAIR8 Avg. embryo expression (dissected): '54.9609'
Avg. embryo expression (LCM): '55.1949'
AT4G25835 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.94118 x 10-1 3 0 100.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25835 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.7554 x 10-1 82 60 57.75% 142 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25830 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.7634 x 10-2 224 1 99.56% 225 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25830 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 0 0 0 100.00% 2 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.323077'
Avg. expression score for this sample: '81.1346'
Avg. expression score in LCM sample: '12.2875'
Tissue used: 'pure endosperm, no chalazal'
AT4G25830 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 0 1 3 100.00% 75.00% 2 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.323077'
Avg. expression score for this sample: '51.1129'
Avg. expression score in LCM sample: '12.2875'
Tissue used: 'full endosperm'
AT4G25830 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '10.089'
Avg. embryo expression (LCM): '0'
AT4G25830 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25830 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25820 XTH14 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25820 XTH14 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G25820 XTH14 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G25820 XTH14 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT4G25820 XTH14 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25820 XTH14 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25810 XTR6 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.14625 x 10-1 9 1 90.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25810 XTR6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '9.56378'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G25810 XTR6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 6 0 4 5 100.00% 55.56% 6 9 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '114.274'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G25810 XTR6 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 4 2 0 0 66.67% 6 0 TAIR8 Avg. embryo expression (dissected): '55.5761'
Avg. embryo expression (LCM): '0'
AT4G25810 XTR6 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25810 XTR6 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25800 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.5 x 10-5 165 15 91.67% 180 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25800 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 9 4 25 25.00% 86.21% 12 29 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.055924'
Avg. expression score for this sample: '79.0014'
Avg. expression score in LCM sample: '29.1166'
Tissue used: 'pure endosperm, no chalazal'
AT4G25800 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.2689 x 10-2 47 25 15 88 65.28% 85.44% 72 103 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.055924'
Avg. expression score for this sample: '183.057'
Avg. expression score in LCM sample: '29.1166'
Tissue used: 'full endosperm'
AT4G25800 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 11 10 5 5 52.38% 50.00% 21 10 TAIR8 Avg. embryo expression (dissected): '51.376'
Avg. embryo expression (LCM): '27.767'
AT4G25800 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.2437 x 10-2 21 1 95.45% 22 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25800 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.564 x 10-3 124 18 87.32% 142 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25790 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25790 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.654119'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G25790 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.905501'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G25790 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '2.26938'
Avg. embryo expression (LCM): '0'
AT4G25790 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25790 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25780 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.375 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25780 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 0.5671 2 0 4 0 100.00% 0.00% 2 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '14.0142'
Avg. expression score in LCM sample: '14.9184'
Tissue used: 'pure endosperm, no chalazal'
AT4G25780 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.76471 x 10-1 6 1 0 2 85.71% 100.00% 7 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '3.57825'
Avg. expression score in LCM sample: '14.9184'
Tissue used: 'full endosperm'
AT4G25780 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '9.33266'
Avg. embryo expression (LCM): '1.41912'
AT4G25780 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25780 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.27322 x 10-1 1 4 20.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25770 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.17812 x 10-1 18 5 78.26% 23 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25770 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.04927 x 10-1 7 2 10 1 77.78% 9.09% 9 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '16.0648'
Avg. expression score in LCM sample: '28.073'
Tissue used: 'pure endosperm, no chalazal'
AT4G25770 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.44184 x 10-1 30 5 12 18 85.71% 60.00% 35 30 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '31.4008'
Avg. expression score in LCM sample: '28.073'
Tissue used: 'full endosperm'
AT4G25770 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.82051 x 10-1 6 0 1 0 100.00% 0.00% 6 1 TAIR8 Avg. embryo expression (dissected): '15.0085'
Avg. embryo expression (LCM): '11.9934'
AT4G25770 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.24298 x 10-1 0 2 0.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25770 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.843 x 10-3 19 29 39.58% 48 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25760 GDU2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25760 GDU2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.35138'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT4G25760 GDU2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT4G25760 GDU2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 2 0 1 1 100.00% 50.00% 2 2 TAIR8 Avg. embryo expression (dissected): '20.2225'
Avg. embryo expression (LCM): '4.94808'
AT4G25760 GDU2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25760 GDU2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25750 ABCG4 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 18 11 62.07% 29 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25750 ABCG4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.95032 x 10-1 47 8 28 42 85.45% 60.00% 55 70 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.240935'
Avg. expression score for this sample: '113.291'
Avg. expression score in LCM sample: '66.1553'
Tissue used: 'pure endosperm, no chalazal'
AT4G25750 ABCG4 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.437 x 10-2 61 19 80 72 76.25% 47.37% 80 152 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.240935'
Avg. expression score for this sample: '102.657'
Avg. expression score in LCM sample: '66.1553'
Tissue used: 'full endosperm'
AT4G25750 ABCG4 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.07812 x 10-1 80 27 35 11 74.77% 23.91% 107 46 TAIR8 Avg. embryo expression (dissected): '236.515'
Avg. embryo expression (LCM): '149.284'
AT4G25750 ABCG4 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.593 x 10-3 1 7 12.50% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25750 ABCG4 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25740 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.21356 x 10-1 15 3 83.33% 18 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25740 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.13289 x 10-1 54 28 25 40 65.85% 61.54% 82 65 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.53067'
Avg. expression score for this sample: '746.172'
Avg. expression score in LCM sample: '284.199'
Tissue used: 'pure endosperm, no chalazal'
AT4G25740 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.88941 x 10-1 24 11 10 9 68.57% 47.37% 35 19 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.53067'
Avg. expression score for this sample: '505.267'
Avg. expression score in LCM sample: '284.199'
Tissue used: 'full endosperm'
AT4G25740 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.99526 x 10-1 90 52 23 10 63.38% 30.30% 142 33 TAIR8 Avg. embryo expression (dissected): '1313.14'
Avg. embryo expression (LCM): '1509.11'
AT4G25740 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.04521 x 10-1 13 6 68.42% 19 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT4G25740 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.92282 x 10-1 21 7 75.00% 28 TAIR8 Mutant effect: 'N/A (not a MEG)'