| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G29890 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.37934 x 10-1 | 64 | 77 | 38 | 34 | 45.39% | 47.22% | 141 | 72 | TAIR8 |
Avg. embryo expression (dissected): '162.416' Avg. embryo expression (LCM): '47.9863' |
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| AT4G29890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.513 x 10-3 | 47 | 6 | 88.68% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29890 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-7 | 165 | 24 | 87.30% | 189 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29890 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-9 | 199 | 26 | 88.44% | 225 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29880 | PIRL7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.35353 x 10-1 | 10 | 5 | 6 | 22 | 66.67% | 78.57% | 15 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.863898' Avg. expression score for this sample: '55.8639' Avg. expression score in LCM sample: '11.8171' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29880 | PIRL7 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 15 | 5 | 8 | 7 | 75.00% | 46.67% | 20 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.863898' Avg. expression score for this sample: '33.9009' Avg. expression score in LCM sample: '11.8171' Tissue used: 'full endosperm' |
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| AT4G29880 | PIRL7 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.96107 x 10-1 | 12 | 8 | 5 | 5 | 60.00% | 50.00% | 20 | 10 | TAIR8 |
Avg. embryo expression (dissected): '67.2844' Avg. embryo expression (LCM): '14.5931' |
|||
| AT4G29880 | PIRL7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.15763 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29880 | PIRL7 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 2 | 75.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29880 | PIRL7 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.655 x 10-2 | 16 | 1 | 94.12% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '302.509' Avg. expression score in LCM sample: '135.397' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G29870 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '292.801' Avg. expression score in LCM sample: '135.397' Tissue used: 'full endosperm' |
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| AT4G29870 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '390.872' Avg. embryo expression (LCM): '173.547' |
||||||
| AT4G29870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G29870 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G29870 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G29860 | EMB2757 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 1.10619 x 10-1 | 16 | 3 | 3 | 16 | 84.21% | 84.21% | 19 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000394' Avg. expression score for this sample: '13.9919' Avg. expression score in LCM sample: '11.7289' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29860 | EMB2757 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 1.47 x 10-3 | 38 | 3 | 7 | 35 | 92.68% | 83.33% | 41 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000394' Avg. expression score for this sample: '37.7451' Avg. expression score in LCM sample: '11.7289' Tissue used: 'full endosperm' |
||||
| AT4G29860 | EMB2757 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 3 | 2 | 2 | 50.00% | 50.00% | 6 | 4 | TAIR8 |
Avg. embryo expression (dissected): '8.3562' Avg. embryo expression (LCM): '10.0217' |
|||
| AT4G29860 | EMB2757 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 15 | 2 | 88.24% | 17 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT4G29860 | EMB2757 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 39 | 5 | 88.64% | 44 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT4G29860 | EMB2757 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.539 x 10-3 | 68 | 1 | 98.55% | 69 | TAIR8 | Mutant effect: 'MEG not affected by met1, dme or fie' | |||||||
| AT4G29850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.72044 x 10-1 | 28 | 8 | 6 | 25 | 77.78% | 80.65% | 36 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000026' Avg. expression score for this sample: '118.149' Avg. expression score in LCM sample: '49.5908' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT4G29850 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.29 x 10-4 | 107 | 25 | 29 | 125 | 81.06% | 81.17% | 132 | 154 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000026' Avg. expression score for this sample: '283.155' Avg. expression score in LCM sample: '49.5908' Tissue used: 'full endosperm' |
|||||
| AT4G29850 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 6 | 6 | 0 | 2 | 50.00% | 100.00% | 12 | 2 | TAIR8 |
Avg. embryo expression (dissected): '45.9899' Avg. embryo expression (LCM): '84.7453' |
||||
| AT4G29850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.948 x 10-3 | 54 | 2 | 96.43% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29850 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.1779 x 10-2 | 120 | 15 | 88.89% | 135 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29850 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.6 x 10-8 | 212 | 9 | 95.93% | 221 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29840 | MTO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.09876 x 10-1 | 60 | 37 | 20 | 60 | 61.86% | 75.00% | 97 | 80 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.549335' Avg. expression score for this sample: '151.279' Avg. expression score in LCM sample: '137.47' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29840 | MTO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.65549 x 10-1 | 66 | 51 | 69 | 138 | 56.41% | 66.67% | 117 | 207 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.549335' Avg. expression score for this sample: '168.616' Avg. expression score in LCM sample: '137.47' Tissue used: 'full endosperm' |
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| AT4G29840 | MTO2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.32049 x 10-1 | 137 | 137 | 18 | 36 | 50.00% | 66.67% | 274 | 54 | TAIR8 |
Avg. embryo expression (dissected): '405.643' Avg. embryo expression (LCM): '337.348' |
|||
| AT4G29840 | MTO2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.16613 x 10-1 | 24 | 11 | 68.57% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29840 | MTO2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.4109 x 10-1 | 209 | 90 | 69.90% | 299 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29840 | MTO2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.4753 x 10-1 | 118 | 59 | 66.67% | 177 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29830 | VIP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.87875 x 10-1 | 13 | 6 | 3 | 10 | 68.42% | 76.92% | 19 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.348944' Avg. expression score for this sample: '70.2027' Avg. expression score in LCM sample: '27.5439' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29830 | VIP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.89585 x 10-1 | 7 | 6 | 2 | 19 | 53.85% | 90.48% | 13 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.348944' Avg. expression score for this sample: '36.206' Avg. expression score in LCM sample: '27.5439' Tissue used: 'full endosperm' |
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| AT4G29830 | VIP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.18245 x 10-1 | 15 | 10 | 0 | 2 | 60.00% | 100.00% | 25 | 2 | TAIR8 |
Avg. embryo expression (dissected): '113.813' Avg. embryo expression (LCM): '91.9916' |
|||
| AT4G29830 | VIP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29830 | VIP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.07349 x 10-1 | 22 | 9 | 70.97% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29830 | VIP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 21 | 7 | 75.00% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29820 | CFIM-25 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.384447' Avg. expression score for this sample: '10.8598' Avg. expression score in LCM sample: '2.46925' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29820 | CFIM-25 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.81654 x 10-1 | 12 | 4 | 2 | 12 | 75.00% | 85.71% | 16 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.384447' Avg. expression score for this sample: '49.6102' Avg. expression score in LCM sample: '2.46925' Tissue used: 'full endosperm' |
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| AT4G29820 | CFIM-25 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.70813' Avg. embryo expression (LCM): '4.20712' |
||||
| AT4G29820 | CFIM-25 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29820 | CFIM-25 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 23 | 6 | 79.31% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29820 | CFIM-25 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.76557 x 10-1 | 23 | 2 | 92.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29810 | MKK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '102.544' Avg. expression score in LCM sample: '68.4923' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29810 | MKK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 8 | 1 | 2 | 1 | 88.89% | 33.33% | 9 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '111.406' Avg. expression score in LCM sample: '68.4923' Tissue used: 'full endosperm' |
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| AT4G29810 | MKK2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '85.9635' Avg. embryo expression (LCM): '48.6143' |
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| AT4G29810 | MKK2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29810 | MKK2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29810 | MKK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.41758 x 10-1 | 1 | 2 | 33.33% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29800 | PLP8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.0116' Avg. expression score for this sample: '6.75756' Avg. expression score in LCM sample: '1.82254' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29800 | PLP8 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0942 x 10-2 | 2 | 1 | 0 | 23 | 66.67% | 100.00% | 3 | 23 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.0116' Avg. expression score for this sample: '25.3274' Avg. expression score in LCM sample: '1.82254' Tissue used: 'full endosperm' |
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| AT4G29800 | PLP8 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.62594' Avg. embryo expression (LCM): '1.55726' |
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| AT4G29800 | PLP8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.897 x 10-3 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29800 | PLP8 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.84091 x 10-1 | 4 | 1 | 80.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29800 | PLP8 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 17 | 10 | 4 | 14 | 62.96% | 77.78% | 27 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.266305' Avg. expression score for this sample: '226.991' Avg. expression score in LCM sample: '82.2936' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.77543 x 10-1 | 21 | 3 | 7 | 20 | 87.50% | 74.07% | 24 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.266305' Avg. expression score for this sample: '242.714' Avg. expression score in LCM sample: '82.2936' Tissue used: 'full endosperm' |
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| AT4G29790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.91329 x 10-1 | 10 | 13 | 4 | 1 | 43.48% | 20.00% | 23 | 5 | TAIR8 |
Avg. embryo expression (dissected): '207.239' Avg. embryo expression (LCM): '134.025' |
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| AT4G29790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.31358 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.90915 x 10-1 | 12 | 1 | 92.31% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.76675 x 10-1 | 20 | 3 | 86.96% | 23 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.95979 x 10-1 | 211 | 114 | 71 | 214 | 64.92% | 75.09% | 325 | 285 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.0e-15' Avg. expression score for this sample: '3208.48' Avg. expression score in LCM sample: '78.0606' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.4 x 10-16 | 846 | 308 | 368 | 1332 | 73.31% | 78.35% | 1154 | 1700 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.0e-15' Avg. expression score for this sample: '4518.2' Avg. expression score in LCM sample: '78.0606' Tissue used: 'full endosperm' |
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| AT4G29780 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.36766 x 10-1 | 95 | 87 | 10 | 19 | 52.20% | 65.52% | 182 | 29 | TAIR8 |
Avg. embryo expression (dissected): '1715.91' Avg. embryo expression (LCM): '45.9267' |
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| AT4G29780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.11571 x 10-1 | 172 | 54 | 76.11% | 226 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.704 x 10-3 | 120 | 21 | 85.11% | 141 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29780 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.7 x 10-11 | 346 | 42 | 89.18% | 388 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.3245 x 10-2 | 160 | 47 | 62 | 150 | 77.29% | 70.75% | 207 | 212 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.3e-09' Avg. expression score for this sample: '141.693' Avg. expression score in LCM sample: '14.404' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3 x 10-9 | 201 | 90 | 23 | 306 | 69.07% | 93.01% | 291 | 329 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.3e-09' Avg. expression score for this sample: '134.098' Avg. expression score in LCM sample: '14.404' Tissue used: 'full endosperm' |
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| AT4G29770 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.2474 x 10-2 | 22 | 67 | 10 | 23 | 24.72% | 69.70% | 89 | 33 | TAIR8 |
Avg. embryo expression (dissected): '66.0362' Avg. embryo expression (LCM): '31.3462' |
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| AT4G29770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.32 x 10-4 | 75 | 4 | 94.94% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.06942 x 10-1 | 228 | 59 | 79.44% | 287 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29770 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.9 x 10-11 | 316 | 23 | 93.22% | 339 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.13738 x 10-1 | 2 | 11 | 1 | 28 | 15.38% | 96.55% | 13 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00002' Avg. expression score for this sample: '26.8396' Avg. expression score in LCM sample: '12.2434' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.1 x 10-6 | 21 | 10 | 5 | 112 | 67.74% | 95.73% | 31 | 117 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.00002' Avg. expression score for this sample: '46.1356' Avg. expression score in LCM sample: '12.2434' Tissue used: 'full endosperm' |
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| AT4G29760 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.40541 x 10-1 | 2 | 24 | 0 | 11 | 7.69% | 100.00% | 26 | 11 | TAIR8 |
Avg. embryo expression (dissected): '46.3936' Avg. embryo expression (LCM): '53.8261' |
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| AT4G29760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.7956 x 10-2 | 31 | 0 | 100.00% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.15 x 10-4 | 88 | 1 | 98.88% | 89 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29760 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.19235 x 10-1 | 44 | 3 | 93.62% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.31919 x 10-1 | 31 | 11 | 22 | 23 | 73.81% | 51.11% | 42 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.088939' Avg. expression score for this sample: '178.528' Avg. expression score in LCM sample: '54.4411' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.03386 x 10-1 | 43 | 25 | 51 | 62 | 63.24% | 54.87% | 68 | 113 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.088939' Avg. expression score for this sample: '208.451' Avg. expression score in LCM sample: '54.4411' Tissue used: 'full endosperm' |
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| AT4G29750 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.69445 x 10-1 | 33 | 25 | 10 | 6 | 56.90% | 37.50% | 58 | 16 | TAIR8 |
Avg. embryo expression (dissected): '215.069' Avg. embryo expression (LCM): '161.717' |
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| AT4G29750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.28604 x 10-1 | 13 | 5 | 72.22% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.271 x 10-3 | 46 | 12 | 79.31% | 58 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29750 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-13 | 95 | 4 | 95.96% | 99 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29740 | CKX4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29740 | CKX4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.178766' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G29740 | CKX4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.149112' Avg. embryo expression (LCM): '0' |
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| AT4G29740 | CKX4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29740 | CKX4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G29740 | CKX4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G29735 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '86.6193' Avg. expression score in LCM sample: '38.3763' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G29735 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '171.052' Avg. expression score in LCM sample: '38.3763' Tissue used: 'full endosperm' |
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| AT4G29735 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '112.864' Avg. embryo expression (LCM): '94.5284' |
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| AT4G29735 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G29735 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G29735 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |