| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G31070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.94932' Avg. expression score in LCM sample: '1.60207' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G31070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 5 | 0 | 1 | 0 | 100.00% | 0.00% | 5 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.48347' Avg. expression score in LCM sample: '1.60207' Tissue used: 'full endosperm' |
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| AT4G31070 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '10.1736' Avg. embryo expression (LCM): '6.81931' |
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| AT4G31070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31070 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 1.3 x 10-19 | 142 | 0 | 5 | 72 | 100.00% | 93.51% | 142 | 77 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '434.716' Avg. expression score in LCM sample: '150.198' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G31060 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 0.0 | 577 | 9 | 2 | 157 | 98.46% | 98.74% | 586 | 159 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '560.99' Avg. expression score in LCM sample: '150.198' Tissue used: 'full endosperm' |
|||||
| AT4G31060 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.80172 x 10-1 | 2 | 3 | 1 | 5 | 40.00% | 83.33% | 5 | 6 | TAIR8 |
Avg. embryo expression (dissected): '40.8076' Avg. embryo expression (LCM): '24.8785' |
||||
| AT4G31060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 45 | 62 | 42.06% | 107 | TAIR8 | Mutant effect: 'MEG affected by met1' | ||||||||
| AT4G31060 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'MEG affected by met1' | |||||||||
| AT4G31060 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'MEG affected by met1' | ||||||||
| AT4G31050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '12.2471' Avg. expression score in LCM sample: '3.93904' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G31050 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.8518' Avg. expression score in LCM sample: '3.93904' Tissue used: 'full endosperm' |
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| AT4G31050 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 3 | 0.00% | 100.00% | 1 | 3 | TAIR8 |
Avg. embryo expression (dissected): '13.7499' Avg. embryo expression (LCM): '16.8536' |
||||
| AT4G31050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31050 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31050 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.92716 x 10-1 | 147 | 102 | 68 | 208 | 59.04% | 75.36% | 249 | 276 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005382' Avg. expression score for this sample: '351.724' Avg. expression score in LCM sample: '165.072' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G31040 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.91 x 10-4 | 266 | 103 | 88 | 300 | 72.09% | 77.32% | 369 | 388 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.005382' Avg. expression score for this sample: '446.09' Avg. expression score in LCM sample: '165.072' Tissue used: 'full endosperm' |
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| AT4G31040 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.70878 x 10-1 | 186 | 159 | 71 | 74 | 53.91% | 51.03% | 345 | 145 | TAIR8 |
Avg. embryo expression (dissected): '582.418' Avg. embryo expression (LCM): '396.098' |
||||
| AT4G31040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.72869 x 10-1 | 45 | 24 | 65.22% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31040 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.16185 x 10-1 | 165 | 49 | 77.10% | 214 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31040 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.7 x 10-8 | 315 | 52 | 85.83% | 367 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT4G31030 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT4G31030 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.56922' Avg. embryo expression (LCM): '0' |
||||||
| AT4G31030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31030 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31030 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 15 | 7 | 5 | 8 | 68.18% | 61.54% | 22 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.580957' Avg. expression score for this sample: '43.18' Avg. expression score in LCM sample: '23.9135' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G31020 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.21949 x 10-1 | 35 | 27 | 4 | 14 | 56.45% | 77.78% | 62 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.580957' Avg. expression score for this sample: '54.3027' Avg. expression score in LCM sample: '23.9135' Tissue used: 'full endosperm' |
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| AT4G31020 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.78417 x 10-1 | 36 | 34 | 14 | 17 | 51.43% | 54.84% | 70 | 31 | TAIR8 |
Avg. embryo expression (dissected): '233.546' Avg. embryo expression (LCM): '214.94' |
||||
| AT4G31020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.45889 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31020 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.1483 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31020 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.922 x 10-3 | 14 | 24 | 36.84% | 38 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '38.9461' Avg. expression score in LCM sample: '19.0338' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G31010 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 2 | 100.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '51.0208' Avg. expression score in LCM sample: '19.0338' Tissue used: 'full endosperm' |
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| AT4G31010 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '41.4937' Avg. embryo expression (LCM): '56.501' |
||||||
| AT4G31010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31010 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31010 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G31000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.91915 x 10-1 | 107 | 85 | 59 | 135 | 55.73% | 69.59% | 192 | 194 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.610479' Avg. expression score for this sample: '119.75' Avg. expression score in LCM sample: '4.89441' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G31000 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.98468 x 10-1 | 373 | 247 | 87 | 383 | 60.16% | 81.49% | 620 | 470 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.610479' Avg. expression score for this sample: '257.866' Avg. expression score in LCM sample: '4.89441' Tissue used: 'full endosperm' |
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| AT4G31000 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.4513 x 10-2 | 159 | 226 | 53 | 52 | 41.30% | 49.52% | 385 | 105 | TAIR8 |
Avg. embryo expression (dissected): '207.922' Avg. embryo expression (LCM): '51.3143' |
||||
| AT4G31000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.5 x 10-9 | 177 | 28 | 86.34% | 205 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31000 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.1486 x 10-2 | 73 | 21 | 77.66% | 94 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G31000 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.261 x 10-3 | 136 | 38 | 78.16% | 174 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30996 | NKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.35117 x 10-1 | 8 | 1 | 1 | 1 | 88.89% | 50.00% | 9 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.618082' Avg. expression score for this sample: '70.2245' Avg. expression score in LCM sample: '9.71532' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30996 | NKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 11 | 3 | 5 | 8 | 78.57% | 61.54% | 14 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.618082' Avg. expression score for this sample: '138.297' Avg. expression score in LCM sample: '9.71532' Tissue used: 'full endosperm' |
||||
| AT4G30996 | NKS1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.44851 x 10-1 | 5 | 2 | 1 | 4 | 71.43% | 80.00% | 7 | 5 | TAIR8 |
Avg. embryo expression (dissected): '80.0746' Avg. embryo expression (LCM): '80.2242' |
|||
| AT4G30996 | NKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.82051 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G30996 | NKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.04591 x 10-1 | 10 | 2 | 83.33% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G30996 | NKS1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.6216 x 10-2 | 15 | 0 | 100.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G30993 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.58668 x 10-1 | 41 | 8 | 8 | 10 | 83.67% | 55.56% | 49 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000404' Avg. expression score for this sample: '47.2954' Avg. expression score in LCM sample: '44.9609' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30993 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.259 x 10-3 | 367 | 15 | 129 | 75 | 96.07% | 36.76% | 382 | 204 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000404' Avg. expression score for this sample: '201.843' Avg. expression score in LCM sample: '44.9609' Tissue used: 'full endosperm' |
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| AT4G30993 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.219 x 10-3 | 154 | 17 | 73 | 10 | 90.06% | 12.05% | 171 | 83 | TAIR8 |
Avg. embryo expression (dissected): '336.087' Avg. embryo expression (LCM): '714.357' |
||||
| AT4G30993 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-6 | 32 | 37 | 46.38% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30993 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.1 x 10-13 | 59 | 78 | 43.07% | 137 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30993 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 832 | 18 | 97.88% | 850 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30991 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.85714 x 10-1 | 1 | 0 | 3 | 0 | 100.00% | 0.00% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.311392' Avg. expression score for this sample: '9.65991' Avg. expression score in LCM sample: '10.2591' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30991 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.12113 x 10-1 | 6 | 3 | 10 | 9 | 66.67% | 47.37% | 9 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.311392' Avg. expression score for this sample: '23.0586' Avg. expression score in LCM sample: '10.2591' Tissue used: 'full endosperm' |
|||||
| AT4G30991 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.31222 x 10-1 | 6 | 1 | 0 | 2 | 85.71% | 100.00% | 7 | 2 | TAIR8 |
Avg. embryo expression (dissected): '49.286' Avg. embryo expression (LCM): '64.8274' |
||||
| AT4G30991 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G30991 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.9748 x 10-2 | 13 | 3 | 81.25% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30991 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0648 x 10-1 | 11 | 4 | 73.33% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.55759 x 10-1 | 25 | 15 | 9 | 18 | 62.50% | 66.67% | 40 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '29.484' Avg. expression score in LCM sample: '17.2113' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30990 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.97698 x 10-1 | 38 | 11 | 33 | 55 | 77.55% | 62.50% | 49 | 88 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '53.5016' Avg. expression score in LCM sample: '17.2113' Tissue used: 'full endosperm' |
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| AT4G30990 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.98962 x 10-1 | 37 | 55 | 9 | 23 | 40.22% | 71.88% | 92 | 32 | TAIR8 |
Avg. embryo expression (dissected): '103.036' Avg. embryo expression (LCM): '164.404' |
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| AT4G30990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.65025 x 10-1 | 8 | 5 | 61.54% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30990 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.21752 x 10-1 | 107 | 36 | 74.83% | 143 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30990 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-6 | 221 | 38 | 85.33% | 259 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30980 | LRL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.179168' Avg. expression score for this sample: '50.1' Avg. expression score in LCM sample: '10.803' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30980 | LRL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.79168 x 10-1 | 6 | 4 | 5 | 1 | 60.00% | 16.67% | 10 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.179168' Avg. expression score for this sample: '33.339' Avg. expression score in LCM sample: '10.803' Tissue used: 'full endosperm' |
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| AT4G30980 | LRL2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 0 | 0 | 3 | 0 | 0.00% | 0 | 3 | TAIR8 |
Avg. embryo expression (dissected): '50.3765' Avg. embryo expression (LCM): '30.7811' |
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| AT4G30980 | LRL2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.82043 x 10-1 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G30980 | LRL2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30980 | LRL2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.70588 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G30975 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 1 | 0 | 0 | 50.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.592075' Avg. expression score for this sample: '.696778' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30975 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 3 | 0 | 100.00% | 0.00% | 2 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.592075' Avg. expression score for this sample: '2.62909' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G30975 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 7 | 2 | 3 | 41.67% | 60.00% | 12 | 5 | TAIR8 |
Avg. embryo expression (dissected): '31.2434' Avg. embryo expression (LCM): '35.8296' |
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| AT4G30975 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G30975 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G30975 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30972 | MIR156B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30972 | MIR156B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G30972 | MIR156B | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G30972 | MIR156B | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30972 | MIR156B | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30972 | MIR156B | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G30970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '3.65978' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30970 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '2.0839' Avg. expression score in LCM sample: '3.65978' Tissue used: 'full endosperm' |
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| AT4G30970 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G30970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G30970 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G30970 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G30960 | SIP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.57979 x 10-1 | 437 | 162 | 285 | 388 | 72.95% | 57.65% | 599 | 673 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.016721' Avg. expression score for this sample: '8617.36' Avg. expression score in LCM sample: '3084.53' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G30960 | SIP3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3 x 10-4 | 391 | 188 | 405 | 1144 | 67.53% | 73.85% | 579 | 1549 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.016721' Avg. expression score for this sample: '3298.72' Avg. expression score in LCM sample: '3084.53' Tissue used: 'full endosperm' |
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| AT4G30960 | SIP3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.81048 x 10-1 | 105 | 102 | 52 | 37 | 50.72% | 41.57% | 207 | 89 | TAIR8 |
Avg. embryo expression (dissected): '4081.45' Avg. embryo expression (LCM): '1354.68' |
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| AT4G30960 | SIP3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.47769 x 10-1 | 102 | 37 | 73.38% | 139 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |