| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G34131 | UGT73B3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.55643 x 10-1 | 7 | 11 | 0 | 6 | 38.89% | 100.00% | 18 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.256526' Avg. expression score for this sample: '7.16031' Avg. expression score in LCM sample: '1.67556' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34131 | UGT73B3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.0994 x 10-2 | 29 | 5 | 0 | 11 | 85.29% | 100.00% | 34 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.256526' Avg. expression score for this sample: '14.7495' Avg. expression score in LCM sample: '1.67556' Tissue used: 'full endosperm' |
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| AT4G34131 | UGT73B3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.72482 x 10-1 | 7 | 13 | 0 | 3 | 35.00% | 100.00% | 20 | 3 | TAIR8 |
Avg. embryo expression (dissected): '9.08019' Avg. embryo expression (LCM): '4.99831' |
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| AT4G34131 | UGT73B3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34131 | UGT73B3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 3 | 80.00% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34131 | UGT73B3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.99401 x 10-1 | 61 | 12 | 83.56% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34120 | LEJ1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.710382' Avg. expression score for this sample: '20.9583' Avg. expression score in LCM sample: '15.7562' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34120 | LEJ1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 0 | 6 | 5 | 100.00% | 45.45% | 3 | 11 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.710382' Avg. expression score for this sample: '27.8952' Avg. expression score in LCM sample: '15.7562' Tissue used: 'full endosperm' |
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| AT4G34120 | LEJ1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '30.8347' Avg. embryo expression (LCM): '15.7108' |
||||
| AT4G34120 | LEJ1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.15686 x 10-1 | 0 | 3 | 0.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34120 | LEJ1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 2 | 60.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34120 | LEJ1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.45 x 10-4 | 25 | 0 | 100.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34110 | PAB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.68551 x 10-1 | 427 | 240 | 202 | 441 | 64.02% | 68.58% | 667 | 643 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000641' Avg. expression score for this sample: '1225.86' Avg. expression score in LCM sample: '915.371' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34110 | PAB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.7 x 10-5 | 1187 | 400 | 440 | 951 | 74.80% | 68.37% | 1587 | 1391 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000641' Avg. expression score for this sample: '1241.58' Avg. expression score in LCM sample: '915.371' Tissue used: 'full endosperm' |
||||
| AT4G34110 | PAB2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.20937 x 10-1 | 310 | 313 | 90 | 99 | 49.76% | 52.38% | 623 | 189 | TAIR8 |
Avg. embryo expression (dissected): '1420' Avg. embryo expression (LCM): '1319.92' |
|||
| AT4G34110 | PAB2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.17988 x 10-1 | 278 | 115 | 70.74% | 393 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34110 | PAB2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-17 | 572 | 100 | 85.12% | 672 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34110 | PAB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 1173 | 151 | 88.60% | 1324 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34100 | CER9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.86688 x 10-1 | 339 | 162 | 175 | 382 | 67.66% | 68.58% | 501 | 557 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-06' Avg. expression score for this sample: '611.46' Avg. expression score in LCM sample: '405.383' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34100 | CER9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.6 x 10-8 | 380 | 157 | 193 | 737 | 70.76% | 79.25% | 537 | 930 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '2.4e-06' Avg. expression score for this sample: '558.467' Avg. expression score in LCM sample: '405.383' Tissue used: 'full endosperm' |
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| AT4G34100 | CER9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.76728 x 10-1 | 231 | 229 | 43 | 66 | 50.22% | 60.55% | 460 | 109 | TAIR8 |
Avg. embryo expression (dissected): '414.498' Avg. embryo expression (LCM): '208.108' |
|||
| AT4G34100 | CER9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-14 | 190 | 11 | 94.53% | 201 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34100 | CER9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.4 x 10-6 | 1437 | 389 | 78.70% | 1826 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34100 | CER9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.7 x 10-4 | 734 | 198 | 78.76% | 932 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34090 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '230.119' Avg. expression score in LCM sample: '89.8043' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34090 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '331.911' Avg. expression score in LCM sample: '89.8043' Tissue used: 'full endosperm' |
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| AT4G34090 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '494.501' Avg. embryo expression (LCM): '551.196' |
||||||
| AT4G34090 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34090 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34090 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.60746' Avg. expression score in LCM sample: '1.35221' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.55701' Avg. expression score in LCM sample: '1.35221' Tissue used: 'full endosperm' |
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| AT4G34080 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.5521' Avg. embryo expression (LCM): '4.62156' |
||||||
| AT4G34080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34080 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34071 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '33.3874' Avg. expression score in LCM sample: '47.4155' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34071 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 4 | 0 | 0 | 0 | 100.00% | 4 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '48.5' Avg. expression score in LCM sample: '47.4155' Tissue used: 'full endosperm' |
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| AT4G34071 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '44.6655' Avg. embryo expression (LCM): '40.514' |
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| AT4G34071 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34071 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34071 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 37 | 6 | 17 | 7 | 86.05% | 29.17% | 43 | 24 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.286388' Avg. expression score for this sample: '946.498' Avg. expression score in LCM sample: '555.258' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.5523 x 10-1 | 48 | 11 | 12 | 28 | 81.36% | 70.00% | 59 | 40 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.286388' Avg. expression score for this sample: '1104.4' Avg. expression score in LCM sample: '555.258' Tissue used: 'full endosperm' |
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| AT4G34070 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.72483 x 10-1 | 40 | 14 | 12 | 4 | 74.07% | 25.00% | 54 | 16 | TAIR8 |
Avg. embryo expression (dissected): '1159.98' Avg. embryo expression (LCM): '827.937' |
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| AT4G34070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.8029 x 10-2 | 4 | 7 | 36.36% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G34070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.92428 x 10-1 | 38 | 23 | 62.30% | 61 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G34070 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-9 | 146 | 6 | 96.05% | 152 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G34060 | DML3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '.869031' Avg. expression score in LCM sample: '1.79315' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34060 | DML3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 4 | 100.00% | 0 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.444444' Avg. expression score for this sample: '1.68158' Avg. expression score in LCM sample: '1.79315' Tissue used: 'full endosperm' |
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| AT4G34060 | DML3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.452821' Avg. embryo expression (LCM): '.376757' |
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| AT4G34060 | DML3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G34060 | DML3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.44444 x 10-1 | 3 | 1 | 75.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34060 | DML3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34050 | CCoAOMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 7 | 4 | 2 | 8 | 63.64% | 80.00% | 11 | 10 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.048401' Avg. expression score for this sample: '1371.48' Avg. expression score in LCM sample: '359.349' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34050 | CCoAOMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0239 x 10-2 | 12 | 1 | 2 | 20 | 92.31% | 90.91% | 13 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.048401' Avg. expression score for this sample: '1584.67' Avg. expression score in LCM sample: '359.349' Tissue used: 'full endosperm' |
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| AT4G34050 | CCoAOMT1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.00323 x 10-1 | 3 | 9 | 0 | 0 | 25.00% | 12 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1247.2' Avg. embryo expression (LCM): '618.698' |
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| AT4G34050 | CCoAOMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34050 | CCoAOMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.79872 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34050 | CCoAOMT1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.43498 x 10-1 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34040 | MBR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.11341 x 10-1 | 592 | 217 | 250 | 442 | 73.18% | 63.87% | 809 | 692 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.152256' Avg. expression score for this sample: '533.025' Avg. expression score in LCM sample: '222.291' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34040 | MBR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.74236 x 10-1 | 447 | 183 | 227 | 426 | 70.95% | 65.24% | 630 | 653 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.152256' Avg. expression score for this sample: '369.781' Avg. expression score in LCM sample: '222.291' Tissue used: 'full endosperm' |
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| AT4G34040 | MBR2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 206 | 175 | 83 | 52 | 54.07% | 38.52% | 381 | 135 | TAIR8 |
Avg. embryo expression (dissected): '337.269' Avg. embryo expression (LCM): '140.669' |
|||
| AT4G34040 | MBR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.79234 x 10-1 | 94 | 48 | 66.20% | 142 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34040 | MBR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.67 x 10-4 | 162 | 41 | 79.80% | 203 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34040 | MBR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.4 x 10-9 | 199 | 31 | 86.52% | 230 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34035 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34035 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G34035 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT4G34035 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34035 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34035 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G34030 | MCCB | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.02562 x 10-1 | 7 | 3 | 6 | 19 | 70.00% | 76.00% | 10 | 25 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.168926' Avg. expression score for this sample: '202.972' Avg. expression score in LCM sample: '54.4852' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34030 | MCCB | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.94402 x 10-1 | 27 | 5 | 11 | 27 | 84.38% | 71.05% | 32 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.168926' Avg. expression score for this sample: '203.277' Avg. expression score in LCM sample: '54.4852' Tissue used: 'full endosperm' |
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| AT4G34030 | MCCB | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.81251 x 10-1 | 12 | 9 | 2 | 3 | 57.14% | 60.00% | 21 | 5 | TAIR8 |
Avg. embryo expression (dissected): '220.835' Avg. embryo expression (LCM): '143.406' |
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| AT4G34030 | MCCB | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0055 x 10-1 | 7 | 6 | 53.85% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34030 | MCCB | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.7804 x 10-2 | 36 | 4 | 90.00% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34030 | MCCB | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.21 x 10-4 | 79 | 3 | 96.34% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34020 | DJ1C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.82363 x 10-1 | 19 | 17 | 3 | 13 | 52.78% | 81.25% | 36 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.239873' Avg. expression score for this sample: '43.6489' Avg. expression score in LCM sample: '9.27438' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34020 | DJ1C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.79298 x 10-1 | 13 | 7 | 25 | 28 | 65.00% | 52.83% | 20 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.239873' Avg. expression score for this sample: '38.6788' Avg. expression score in LCM sample: '9.27438' Tissue used: 'full endosperm' |
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| AT4G34020 | DJ1C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.65124 x 10-1 | 46 | 59 | 9 | 6 | 43.81% | 40.00% | 105 | 15 | TAIR8 |
Avg. embryo expression (dissected): '156.162' Avg. embryo expression (LCM): '102.315' |
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| AT4G34020 | DJ1C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.191 x 10-2 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34020 | DJ1C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.24555 x 10-1 | 8 | 3 | 72.73% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34020 | DJ1C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3524 x 10-2 | 22 | 4 | 84.62% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34000 | ABF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.5311 x 10-2 | 25 | 3 | 3 | 15 | 89.29% | 83.33% | 28 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001018' Avg. expression score for this sample: '21.9265' Avg. expression score in LCM sample: '5.93796' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G34000 | ABF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.483 x 10-3 | 44 | 13 | 7 | 47 | 77.19% | 87.04% | 57 | 54 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.001018' Avg. expression score for this sample: '27.9556' Avg. expression score in LCM sample: '5.93796' Tissue used: 'full endosperm' |
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| AT4G34000 | ABF3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.57487 x 10-1 | 21 | 23 | 10 | 8 | 47.73% | 44.44% | 44 | 18 | TAIR8 |
Avg. embryo expression (dissected): '53.7124' Avg. embryo expression (LCM): '45.6881' |
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| AT4G34000 | ABF3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.2224 x 10-1 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34000 | ABF3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.37064 x 10-1 | 82 | 19 | 81.19% | 101 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G34000 | ABF3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.92075 x 10-1 | 248 | 41 | 85.81% | 289 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G33990 | EMB2758 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.9591 x 10-1 | 5 | 10 | 3 | 12 | 33.33% | 80.00% | 15 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '26.9646' Avg. expression score in LCM sample: '23.7959' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G33990 | EMB2758 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.51915 x 10-1 | 29 | 10 | 10 | 17 | 74.36% | 62.96% | 39 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '51.4816' Avg. expression score in LCM sample: '23.7959' Tissue used: 'full endosperm' |
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| AT4G33990 | EMB2758 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.51186 x 10-1 | 6 | 10 | 1 | 2 | 37.50% | 66.67% | 16 | 3 | TAIR8 |
Avg. embryo expression (dissected): '39.818' Avg. embryo expression (LCM): '43.2015' |
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| AT4G33990 | EMB2758 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.6754 x 10-2 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G33990 | EMB2758 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.951 x 10-3 | 13 | 0 | 100.00% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G33990 | EMB2758 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.674 x 10-3 | 17 | 0 | 100.00% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G33985 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '7.29535' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G33985 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '17.4249' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G33985 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '3.28047' Avg. embryo expression (LCM): '0' |
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| AT4G33985 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |