| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G38220 | AQI | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '46.8093' Avg. expression score in LCM sample: '28.6903' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38220 | AQI | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 0 | 3 | 0 | 100.00% | 0.00% | 6 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '65.9544' Avg. expression score in LCM sample: '28.6903' Tissue used: 'full endosperm' |
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| AT4G38220 | AQI | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 0 | 1 | 0 | 100.00% | 0.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '63.8308' Avg. embryo expression (LCM): '43.302' |
|||
| AT4G38220 | AQI | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38220 | AQI | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38220 | AQI | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38215 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.7826 x 10-2 | 6 | 0 | 0 | 7 | 100.00% | 100.00% | 6 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.101075' Avg. expression score for this sample: '17.7144' Avg. expression score in LCM sample: '1.60207' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38215 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.81659 x 10-1 | 8 | 3 | 0 | 4 | 72.73% | 100.00% | 11 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.101075' Avg. expression score for this sample: '34.8823' Avg. expression score in LCM sample: '1.60207' Tissue used: 'full endosperm' |
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| AT4G38215 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 1 | 0 | 0.00% | 0.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '11.919' Avg. embryo expression (LCM): '4.0941' |
||||
| AT4G38215 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.37931 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38215 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 1 | 88.89% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38215 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38210 | EXPA20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.409859' Avg. expression score for this sample: '373.933' Avg. expression score in LCM sample: '190.617' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38210 | EXPA20 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.37186 x 10-1 | 3 | 5 | 0 | 1 | 37.50% | 100.00% | 8 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.409859' Avg. expression score for this sample: '432.162' Avg. expression score in LCM sample: '190.617' Tissue used: 'full endosperm' |
||||
| AT4G38210 | EXPA20 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '264.462' Avg. embryo expression (LCM): '171.45' |
|||||
| AT4G38210 | EXPA20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.30769 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38210 | EXPA20 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38210 | EXPA20 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '195.776' Avg. expression score in LCM sample: '133.545' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38200 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '133.907' Avg. expression score in LCM sample: '133.545' Tissue used: 'full endosperm' |
|||||||
| AT4G38200 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '144.599' Avg. embryo expression (LCM): '107.966' |
||||||
| AT4G38200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38200 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38200 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38190 | CSLD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 2 | 3 | 100.00% | 60.00% | 1 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.02895' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38190 | CSLD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 1 | 1 | 1 | 50.00% | 50.00% | 2 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.73292' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT4G38190 | CSLD4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '1.60339' Avg. embryo expression (LCM): '0' |
|||
| AT4G38190 | CSLD4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38190 | CSLD4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 25 | 21 | 54.35% | 46 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38190 | CSLD4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.3841 x 10-2 | 0 | 6 | 0.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38180 | FRS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 10 | 6 | 6 | 12 | 62.50% | 66.67% | 16 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '25.0782' Avg. expression score in LCM sample: '21.3267' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38180 | FRS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 11 | 2 | 11 | 16 | 84.62% | 59.26% | 13 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '27.6633' Avg. expression score in LCM sample: '21.3267' Tissue used: 'full endosperm' |
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| AT4G38180 | FRS5 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.277 x 10-2 | 13 | 5 | 1 | 7 | 72.22% | 87.50% | 18 | 8 | TAIR8 |
Avg. embryo expression (dissected): '45.3451' Avg. embryo expression (LCM): '35.9929' |
|||
| AT4G38180 | FRS5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.57965 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38180 | FRS5 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 42 | 21 | 66.67% | 63 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38180 | FRS5 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.20081 x 10-1 | 20 | 5 | 80.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38170 | FRS9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.98482 x 10-1 | 12 | 4 | 6 | 14 | 75.00% | 70.00% | 16 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.325001' Avg. expression score for this sample: '50.5085' Avg. expression score in LCM sample: '46.1074' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38170 | FRS9 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.19341 x 10-1 | 23 | 5 | 17 | 40 | 82.14% | 70.18% | 28 | 57 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.325001' Avg. expression score for this sample: '56.3018' Avg. expression score in LCM sample: '46.1074' Tissue used: 'full endosperm' |
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| AT4G38170 | FRS9 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.135 x 10-2 | 18 | 5 | 3 | 7 | 78.26% | 70.00% | 23 | 10 | TAIR8 |
Avg. embryo expression (dissected): '66.657' Avg. embryo expression (LCM): '70.3029' |
|||
| AT4G38170 | FRS9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.65623 x 10-1 | 11 | 5 | 68.75% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38170 | FRS9 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.03274 x 10-1 | 61 | 17 | 78.21% | 78 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38170 | FRS9 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 51 | 19 | 72.86% | 70 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38160 | pde191 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.50839 x 10-1 | 12 | 7 | 2 | 18 | 63.16% | 90.00% | 19 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '53.0492' Avg. expression score in LCM sample: '27.7056' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38160 | pde191 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.65607 x 10-1 | 22 | 13 | 23 | 41 | 62.86% | 64.06% | 35 | 64 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '62.7568' Avg. expression score in LCM sample: '27.7056' Tissue used: 'full endosperm' |
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| AT4G38160 | pde191 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.62358 x 10-1 | 94 | 57 | 29 | 22 | 62.25% | 43.14% | 151 | 51 | TAIR8 |
Avg. embryo expression (dissected): '315.708' Avg. embryo expression (LCM): '287.202' |
|||
| AT4G38160 | pde191 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.6449 x 10-1 | 5 | 1 | 83.33% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38160 | pde191 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.73924 x 10-1 | 19 | 11 | 63.33% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38160 | pde191 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.38828 x 10-1 | 30 | 10 | 75.00% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 6 | 0 | 4 | 4 | 100.00% | 50.00% | 6 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.6603' Avg. expression score in LCM sample: '8.52479' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38150 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.54622 x 10-1 | 6 | 3 | 6 | 7 | 66.67% | 53.85% | 9 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.5727' Avg. expression score in LCM sample: '8.52479' Tissue used: 'full endosperm' |
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| AT4G38150 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.91329 x 10-1 | 9 | 14 | 3 | 2 | 39.13% | 40.00% | 23 | 5 | TAIR8 |
Avg. embryo expression (dissected): '66.5132' Avg. embryo expression (LCM): '114.974' |
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| AT4G38150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38150 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.25788 x 10-1 | 6 | 5 | 54.55% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38150 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.49832 x 10-1 | 15 | 13 | 53.57% | 28 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.5148 x 10-1 | 10 | 14 | 3 | 15 | 41.67% | 83.33% | 24 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.0261' Avg. expression score for this sample: '50.789' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38140 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.7624 x 10-2 | 3 | 7 | 23 | 19 | 30.00% | 45.24% | 10 | 42 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.0261' Avg. expression score for this sample: '39.5112' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G38140 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 3 | 2 | 3 | 3 | 60.00% | 50.00% | 5 | 6 | TAIR8 |
Avg. embryo expression (dissected): '30.0327' Avg. embryo expression (LCM): '11.4911' |
||||
| AT4G38140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.928 x 10-3 | 26 | 6 | 81.25% | 32 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38140 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38140 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.18558 x 10-1 | 0 | 4 | 0.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38130 | HD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.46035 x 10-1 | 182 | 65 | 97 | 149 | 73.68% | 60.57% | 247 | 246 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.7e-08' Avg. expression score for this sample: '1210.04' Avg. expression score in LCM sample: '542.235' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38130 | HD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.9 x 10-11 | 394 | 83 | 217 | 668 | 82.60% | 75.48% | 477 | 885 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1.7e-08' Avg. expression score for this sample: '968.347' Avg. expression score in LCM sample: '542.235' Tissue used: 'full endosperm' |
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| AT4G38130 | HD1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.08628 x 10-1 | 205 | 169 | 49 | 35 | 54.81% | 41.67% | 374 | 84 | TAIR8 |
Avg. embryo expression (dissected): '1414.83' Avg. embryo expression (LCM): '1009.6' |
|||
| AT4G38130 | HD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.75351 x 10-1 | 130 | 38 | 77.38% | 168 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38130 | HD1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-5 | 489 | 95 | 83.73% | 584 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38130 | HD1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.2 x 10-27 | 709 | 59 | 92.32% | 768 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.88673 x 10-1 | 92 | 21 | 30 | 32 | 81.42% | 51.61% | 113 | 62 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232122' Avg. expression score for this sample: '147.601' Avg. expression score in LCM sample: '61.6871' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38120 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.78132 x 10-1 | 124 | 31 | 40 | 47 | 80.00% | 54.02% | 155 | 87 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.232122' Avg. expression score for this sample: '136.367' Avg. expression score in LCM sample: '61.6871' Tissue used: 'full endosperm' |
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| AT4G38120 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.54448 x 10-1 | 75 | 62 | 26 | 21 | 54.74% | 44.68% | 137 | 47 | TAIR8 |
Avg. embryo expression (dissected): '190.312' Avg. embryo expression (LCM): '117.058' |
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| AT4G38120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.599 x 10-3 | 23 | 1 | 95.83% | 24 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38120 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.15229 x 10-1 | 65 | 22 | 74.71% | 87 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38120 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.8 x 10-10 | 162 | 13 | 92.57% | 175 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38100 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.91787 x 10-1 | 24 | 7 | 10 | 18 | 77.42% | 64.29% | 31 | 28 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.29777' Avg. expression score for this sample: '67.3178' Avg. expression score in LCM sample: '68.9038' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38100 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.29219 x 10-1 | 39 | 25 | 19 | 75 | 60.94% | 79.79% | 64 | 94 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.29777' Avg. expression score for this sample: '106.106' Avg. expression score in LCM sample: '68.9038' Tissue used: 'full endosperm' |
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| AT4G38100 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.8513 x 10-2 | 44 | 28 | 3 | 10 | 61.11% | 76.92% | 72 | 13 | TAIR8 |
Avg. embryo expression (dissected): '154.39' Avg. embryo expression (LCM): '382.647' |
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| AT4G38100 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.48904 x 10-1 | 29 | 8 | 78.38% | 37 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38100 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.239 x 10-3 | 84 | 11 | 88.42% | 95 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38100 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0154 x 10-2 | 100 | 18 | 84.75% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38092 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.07687' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38092 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.45954' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G38092 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.95242' Avg. embryo expression (LCM): '2.1224' |
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| AT4G38092 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38092 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38092 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.33333 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38090 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '437.04' Avg. expression score in LCM sample: '342.079' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38090 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '411.992' Avg. expression score in LCM sample: '342.079' Tissue used: 'full endosperm' |
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| AT4G38090 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '318.638' Avg. embryo expression (LCM): '128.474' |
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| AT4G38090 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38090 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38090 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 18 | 9 | 11 | 26 | 66.67% | 70.27% | 27 | 37 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000918' Avg. expression score for this sample: '136.925' Avg. expression score in LCM sample: '9.06861' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38080 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.0 x 10-5 | 13 | 13 | 1 | 94 | 50.00% | 98.95% | 26 | 95 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000918' Avg. expression score for this sample: '290.095' Avg. expression score in LCM sample: '9.06861' Tissue used: 'full endosperm' |
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| AT4G38080 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.5851 x 10-2 | 27 | 11 | 4 | 6 | 71.05% | 60.00% | 38 | 10 | TAIR8 |
Avg. embryo expression (dissected): '149.379' Avg. embryo expression (LCM): '36.8217' |
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| AT4G38080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38080 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.8241 | 32 | 8 | 80.00% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38080 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3299 x 10-2 | 48 | 2 | 96.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.99773 x 10-1 | 242 | 102 | 85 | 140 | 70.35% | 62.22% | 344 | 225 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.533571' Avg. expression score for this sample: '158.923' Avg. expression score in LCM sample: '77.752' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38070 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.73195 x 10-1 | 220 | 106 | 215 | 364 | 67.48% | 62.87% | 326 | 579 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.533571' Avg. expression score for this sample: '144.26' Avg. expression score in LCM sample: '77.752' Tissue used: 'full endosperm' |
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| AT4G38070 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 0.5268 | 355 | 307 | 101 | 81 | 53.63% | 44.51% | 662 | 182 | TAIR8 |
Avg. embryo expression (dissected): '415.153' Avg. embryo expression (LCM): '307.534' |
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| AT4G38070 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.03676 x 10-1 | 11 | 7 | 61.11% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |