| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT4G38690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '6.98235' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38690 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '5.26786' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G38690 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '61.0827' Avg. embryo expression (LCM): '26.2851' |
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| AT4G38690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38690 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38690 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38680 | GRP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.41936 x 10-1 | 159 | 56 | 87 | 120 | 73.95% | 57.97% | 215 | 207 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.646541' Avg. expression score for this sample: '1096.17' Avg. expression score in LCM sample: '528.802' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38680 | GRP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.2971 x 10-1 | 381 | 132 | 229 | 386 | 74.27% | 62.76% | 513 | 615 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.646541' Avg. expression score for this sample: '636.309' Avg. expression score in LCM sample: '528.802' Tissue used: 'full endosperm' |
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| AT4G38680 | GRP2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.486 x 10-3 | 285 | 169 | 40 | 27 | 62.78% | 40.30% | 454 | 67 | TAIR8 |
Avg. embryo expression (dissected): '2972.03' Avg. embryo expression (LCM): '2511.72' |
|||
| AT4G38680 | GRP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.37998 x 10-1 | 65 | 43 | 60.19% | 108 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38680 | GRP2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.98503 x 10-1 | 121 | 48 | 71.60% | 169 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38680 | GRP2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.7 x 10-8 | 191 | 34 | 84.89% | 225 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '15.5603' Avg. expression score in LCM sample: '1.20523' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38670 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '18.6208' Avg. expression score in LCM sample: '1.20523' Tissue used: 'full endosperm' |
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| AT4G38670 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 2 | 0 | 0 | 60.00% | 5 | 0 | TAIR8 |
Avg. embryo expression (dissected): '64.6057' Avg. embryo expression (LCM): '38.9316' |
|||||
| AT4G38670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38670 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.25 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38670 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.35419 x 10-1 | 103 | 157 | 56 | 248 | 39.62% | 81.58% | 260 | 304 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.544712' Avg. expression score for this sample: '143.437' Avg. expression score in LCM sample: '11.5526' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38660 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.40724 x 10-1 | 75 | 46 | 45 | 144 | 61.98% | 76.19% | 121 | 189 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.544712' Avg. expression score for this sample: '52.2081' Avg. expression score in LCM sample: '11.5526' Tissue used: 'full endosperm' |
|||||
| AT4G38660 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.63627 x 10-1 | 790 | 871 | 138 | 171 | 47.56% | 55.34% | 1661 | 309 | TAIR8 |
Avg. embryo expression (dissected): '732.692' Avg. embryo expression (LCM): '492.635' |
||||
| AT4G38660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.65273 x 10-1 | 67 | 25 | 72.83% | 92 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38660 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.5326 x 10-2 | 2 | 6 | 25.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38660 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.89 x 10-3 | 44 | 9 | 83.02% | 53 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 0 | 2 | 1 | 33.33% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '6.14863' Avg. expression score in LCM sample: '8.20144' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT4G38650 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.54923' Avg. expression score in LCM sample: '8.20144' Tissue used: 'full endosperm' |
||||||
| AT4G38650 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.08161 x 10-1 | 9 | 3 | 3 | 6 | 75.00% | 66.67% | 12 | 9 | TAIR8 |
Avg. embryo expression (dissected): '61.7699' Avg. embryo expression (LCM): '41.3931' |
||||
| AT4G38650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38650 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 2 | 66.67% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38650 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.28571 x 10-1 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.40196 x 10-1 | 163 | 44 | 85 | 137 | 78.74% | 61.71% | 207 | 222 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.014588' Avg. expression score for this sample: '281.889' Avg. expression score in LCM sample: '237.606' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38640 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0769 x 10-2 | 179 | 27 | 55 | 77 | 86.89% | 58.33% | 206 | 132 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.014588' Avg. expression score for this sample: '216.124' Avg. expression score in LCM sample: '237.606' Tissue used: 'full endosperm' |
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| AT4G38640 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.34862 x 10-1 | 46 | 45 | 31 | 20 | 50.55% | 39.22% | 91 | 51 | TAIR8 |
Avg. embryo expression (dissected): '165.978' Avg. embryo expression (LCM): '71.8602' |
||||
| AT4G38640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.19936 x 10-1 | 41 | 11 | 78.85% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38640 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.04526 x 10-1 | 92 | 42 | 68.66% | 134 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38640 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 x 10-22 | 307 | 12 | 96.24% | 319 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38630 | RPN10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.46703 x 10-1 | 10 | 3 | 7 | 25 | 76.92% | 78.12% | 13 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.149001' Avg. expression score for this sample: '91.4395' Avg. expression score in LCM sample: '122.904' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38630 | RPN10 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.67561 x 10-1 | 63 | 25 | 68 | 164 | 71.59% | 70.69% | 88 | 232 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.149001' Avg. expression score for this sample: '154.519' Avg. expression score in LCM sample: '122.904' Tissue used: 'full endosperm' |
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| AT4G38630 | RPN10 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.39622 x 10-1 | 17 | 29 | 3 | 5 | 36.96% | 62.50% | 46 | 8 | TAIR8 |
Avg. embryo expression (dissected): '118.449' Avg. embryo expression (LCM): '314.178' |
|||
| AT4G38630 | RPN10 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 26 | 10 | 72.22% | 36 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38630 | RPN10 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.51131 x 10-1 | 313 | 117 | 72.79% | 430 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38630 | RPN10 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.3632 x 10-2 | 238 | 61 | 79.60% | 299 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38620 | MYB4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.2 x 10-22 | 175 | 7 | 0 | 82 | 96.15% | 100.00% | 182 | 82 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '109.068' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38620 | MYB4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 424 | 19 | 28 | 527 | 95.71% | 94.95% | 443 | 555 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '197.179' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT4G38620 | MYB4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.10326 x 10-1 | 80 | 89 | 22 | 41 | 47.34% | 65.08% | 169 | 63 | TAIR8 |
Avg. embryo expression (dissected): '145.027' Avg. embryo expression (LCM): '67.4396' |
|||
| AT4G38620 | MYB4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0613 x 10-2 | 177 | 1 | 99.44% | 178 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38620 | MYB4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-12 | 960 | 1 | 99.90% | 961 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38620 | MYB4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.0 x 10-12 | 1896 | 12 | 99.37% | 1908 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38600 | KAK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.44068 x 10-1 | 123 | 66 | 85 | 184 | 65.08% | 68.40% | 189 | 269 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.02032' Avg. expression score for this sample: '250.016' Avg. expression score in LCM sample: '271.529' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38600 | KAK | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.788 x 10-3 | 203 | 102 | 85 | 325 | 66.56% | 79.27% | 305 | 410 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.02032' Avg. expression score for this sample: '251.42' Avg. expression score in LCM sample: '271.529' Tissue used: 'full endosperm' |
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| AT4G38600 | KAK | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.34274 x 10-1 | 84 | 118 | 31 | 61 | 41.58% | 66.30% | 202 | 92 | TAIR8 |
Avg. embryo expression (dissected): '261.61' Avg. embryo expression (LCM): '197.546' |
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| AT4G38600 | KAK | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.1818 x 10-1 | 67 | 24 | 73.63% | 91 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38600 | KAK | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.1458 x 10-2 | 625 | 205 | 75.30% | 830 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38600 | KAK | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.5 x 10-11 | 525 | 95 | 84.68% | 620 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38590 | BGAL14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.982577' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38590 | BGAL14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 3 | 0 | 0 | 0 | 100.00% | 3 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.55661' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G38590 | BGAL14 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.836276' Avg. embryo expression (LCM): '.401874' |
||||
| AT4G38590 | BGAL14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38590 | BGAL14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38590 | BGAL14 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38580 | FP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.08478 x 10-1 | 85 | 48 | 60 | 111 | 63.91% | 64.91% | 133 | 171 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.565632' Avg. expression score for this sample: '296.366' Avg. expression score in LCM sample: '51.913' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38580 | FP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.91734 x 10-1 | 137 | 52 | 124 | 199 | 72.49% | 61.61% | 189 | 323 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.565632' Avg. expression score for this sample: '214.326' Avg. expression score in LCM sample: '51.913' Tissue used: 'full endosperm' |
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| AT4G38580 | FP6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 26 | 25 | 4 | 5 | 50.98% | 55.56% | 51 | 9 | TAIR8 |
Avg. embryo expression (dissected): '107.692' Avg. embryo expression (LCM): '29.0605' |
|||
| AT4G38580 | FP6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.81365 x 10-1 | 20 | 13 | 60.61% | 33 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38580 | FP6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.1 x 10-7 | 42 | 1 | 97.67% | 43 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38580 | FP6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.26773 x 10-1 | 5 | 4 | 55.56% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38570 | PIS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.17601 x 10-1 | 67 | 39 | 31 | 51 | 63.21% | 62.20% | 106 | 82 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.745694' Avg. expression score for this sample: '67.5182' Avg. expression score in LCM sample: '22.7524' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38570 | PIS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 9.02067 x 10-1 | 47 | 5 | 43 | 55 | 90.38% | 56.12% | 52 | 98 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.745694' Avg. expression score for this sample: '47.5655' Avg. expression score in LCM sample: '22.7524' Tissue used: 'full endosperm' |
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| AT4G38570 | PIS2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.97301 x 10-1 | 51 | 37 | 21 | 10 | 57.95% | 32.26% | 88 | 31 | TAIR8 |
Avg. embryo expression (dissected): '70.8151' Avg. embryo expression (LCM): '49.1794' |
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| AT4G38570 | PIS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.92735 x 10-1 | 8 | 9 | 47.06% | 17 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38570 | PIS2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.19162 x 10-1 | 13 | 5 | 72.22% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38570 | PIS2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.75433 x 10-1 | 38 | 14 | 73.08% | 52 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT4G38560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 2 | 1 | 2 | 33.33% | 66.67% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.61153' Avg. expression score in LCM sample: '4.9532' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38560 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.33718 x 10-1 | 11 | 2 | 3 | 5 | 84.62% | 62.50% | 13 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '5.38758' Avg. expression score in LCM sample: '4.9532' Tissue used: 'full endosperm' |
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| AT4G38560 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 10 | 7 | 5 | 0 | 58.82% | 0.00% | 17 | 5 | TAIR8 |
Avg. embryo expression (dissected): '11.3187' Avg. embryo expression (LCM): '2.10984' |
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| AT4G38560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38560 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38560 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.75732 x 10-1 | 14 | 2 | 87.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 2.60267 x 10-1 | 76 | 25 | 38 | 85 | 75.25% | 69.11% | 101 | 123 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.758181' Avg. expression score for this sample: '145.686' Avg. expression score in LCM sample: '82.6464' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.82146 x 10-1 | 57 | 32 | 28 | 42 | 64.04% | 60.00% | 89 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.758181' Avg. expression score for this sample: '88.4559' Avg. expression score in LCM sample: '82.6464' Tissue used: 'full endosperm' |
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| AT4G38550 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.0809 x 10-1 | 59 | 47 | 26 | 18 | 55.66% | 40.91% | 106 | 44 | TAIR8 |
Avg. embryo expression (dissected): '130.452' Avg. embryo expression (LCM): '72.8523' |
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| AT4G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.91457 x 10-1 | 21 | 6 | 77.78% | 27 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.785 x 10-3 | 68 | 12 | 85.00% | 80 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38550 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.91 x 10-4 | 88 | 16 | 84.62% | 104 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38545 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.4415' Avg. expression score in LCM sample: '16.9908' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38545 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 2 | 0 | 2 | 60.00% | 100.00% | 5 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '41.6292' Avg. expression score in LCM sample: '16.9908' Tissue used: 'full endosperm' |
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| AT4G38545 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '19.0625' Avg. embryo expression (LCM): '16.9415' |
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| AT4G38545 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.90909 x 10-1 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38545 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38545 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 66.67% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT4G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '33.6316' Avg. expression score in LCM sample: '20.7976' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 2 | 100.00% | 100.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '57.9829' Avg. expression score in LCM sample: '20.7976' Tissue used: 'full endosperm' |
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| AT4G38540 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '34.0509' Avg. embryo expression (LCM): '31.3085' |
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| AT4G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38540 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT4G38530 | PLC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '.569236' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT4G38530 | PLC1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '1.59262' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT4G38530 | PLC1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '1.05347' Avg. embryo expression (LCM): '0' |
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| AT4G38530 | PLC1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |