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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G03100 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 4 5 2 6 44.44% 75.00% 9 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.250174'
Avg. expression score for this sample: '6.31605'
Avg. expression score in LCM sample: '2.8367'
Tissue used: 'pure endosperm, no chalazal'
AT5G03100 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.53711 x 10-1 5 6 13 16 45.45% 55.17% 11 29 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.250174'
Avg. expression score for this sample: '9.25001'
Avg. expression score in LCM sample: '2.8367'
Tissue used: 'full endosperm'
AT5G03100 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 7 9 2 6 43.75% 75.00% 16 8 TAIR8 Avg. embryo expression (dissected): '12.7581'
Avg. embryo expression (LCM): '12.9228'
AT5G03100 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.8424 x 10-2 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03100 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.1827 x 10-2 15 2 88.24% 17 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03100 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.03294 x 10-1 26 12 68.42% 38 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03090 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.54545 x 10-1 1 0 0 5 100.00% 100.00% 1 5 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.171919'
Avg. expression score for this sample: '6.23098'
Avg. expression score in LCM sample: '15.0948'
Tissue used: 'pure endosperm, no chalazal'
AT5G03090 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.82043 x 10-1 0 1 0 9 0.00% 100.00% 1 9 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.171919'
Avg. expression score for this sample: '8.6799'
Avg. expression score in LCM sample: '15.0948'
Tissue used: 'full endosperm'
AT5G03090 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 1 100.00% 0 1 TAIR8 Avg. embryo expression (dissected): '2.54944'
Avg. embryo expression (LCM): '0'
AT5G03090 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.2 x 10-8 2 23 8.00% 25 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03090 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03090 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03080 LPPgamma endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '275.737'
Avg. expression score in LCM sample: '212.311'
Tissue used: 'pure endosperm, no chalazal'
AT5G03080 LPPgamma endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '598.312'
Avg. expression score in LCM sample: '212.311'
Tissue used: 'full endosperm'
AT5G03080 LPPgamma embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '281.345'
Avg. embryo expression (LCM): '129.579'
AT5G03080 LPPgamma endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03080 LPPgamma endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03080 LPPgamma endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03070 IMPA-9 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 3 1 0 2 75.00% 100.00% 4 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '33.0089'
Avg. expression score in LCM sample: '22.5319'
Tissue used: 'pure endosperm, no chalazal'
AT5G03070 IMPA-9 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 2 0 3 50.00% 100.00% 4 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '46.5573'
Avg. expression score in LCM sample: '22.5319'
Tissue used: 'full endosperm'
AT5G03070 IMPA-9 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 2 1 0 1 66.67% 100.00% 3 1 TAIR8 Avg. embryo expression (dissected): '45.3234'
Avg. embryo expression (LCM): '58.3974'
AT5G03070 IMPA-9 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.85714 x 10-1 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03070 IMPA-9 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03070 IMPA-9 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.16131 x 10-1 8 1 88.89% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03060 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.76825'
Avg. expression score in LCM sample: '3.35112'
Tissue used: 'pure endosperm, no chalazal'
AT5G03060 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 2 0 0 0 100.00% 2 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '7.61925'
Avg. expression score in LCM sample: '3.35112'
Tissue used: 'full endosperm'
AT5G03060 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '15.1685'
Avg. embryo expression (LCM): '30.0778'
AT5G03060 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03060 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03060 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03050 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '17.486'
Avg. expression score in LCM sample: '3.68918'
Tissue used: 'pure endosperm, no chalazal'
AT5G03050 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '34.9905'
Avg. expression score in LCM sample: '3.68918'
Tissue used: 'full endosperm'
AT5G03050 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '51.1758'
Avg. embryo expression (LCM): '42.5485'
AT5G03050 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03050 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03050 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03040 iqd2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 129 50 58 91 72.07% 61.07% 179 149 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.1051'
Avg. expression score for this sample: '425.57'
Avg. expression score in LCM sample: '149.757'
Tissue used: 'pure endosperm, no chalazal'
AT5G03040 iqd2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.1098 x 10-2 202 62 116 252 76.52% 68.48% 264 368 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.1051'
Avg. expression score for this sample: '496.567'
Avg. expression score in LCM sample: '149.757'
Tissue used: 'full endosperm'
AT5G03040 iqd2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 94 92 30 26 50.54% 46.43% 186 56 TAIR8 Avg. embryo expression (dissected): '551.462'
Avg. embryo expression (LCM): '248.66'
AT5G03040 iqd2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 25 10 71.43% 35 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03040 iqd2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 5.13 x 10-4 357 95 78.98% 452 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03040 iqd2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.9 x 10-19 433 46 90.40% 479 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03030 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 18 7 4 8 72.00% 66.67% 25 12 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000078'
Avg. expression score for this sample: '46.6447'
Avg. expression score in LCM sample: '4.27709'
Tissue used: 'pure endosperm, no chalazal'
AT5G03030 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.3 x 10-5 87 18 30 137 82.86% 82.04% 105 167 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000078'
Avg. expression score for this sample: '127.58'
Avg. expression score in LCM sample: '4.27709'
Tissue used: 'full endosperm'
AT5G03030 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.17634 x 10-1 27 17 3 2 61.36% 40.00% 44 5 TAIR8 Avg. embryo expression (dissected): '66.2285'
Avg. embryo expression (LCM): '54.8433'
AT5G03030 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.514 x 10-3 34 22 60.71% 56 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03030 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.6975 x 10-2 221 31 87.70% 252 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03030 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.2402 x 10-2 289 44 86.79% 333 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03020 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '9.33416'
Avg. expression score in LCM sample: '20.6506'
Tissue used: 'pure endosperm, no chalazal'
AT5G03020 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '7.74991'
Avg. expression score in LCM sample: '20.6506'
Tissue used: 'full endosperm'
AT5G03020 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '5.56197'
Avg. embryo expression (LCM): '0'
AT5G03020 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03020 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.35294 x 10-1 13 3 81.25% 16 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03020 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03010 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.62137 x 10-1 4 3 5 3 57.14% 37.50% 7 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '23.2864'
Avg. expression score in LCM sample: '38.5232'
Tissue used: 'pure endosperm, no chalazal'
AT5G03010 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.06561 x 10-1 17 8 3 11 68.00% 78.57% 25 14 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '32.3389'
Avg. expression score in LCM sample: '38.5232'
Tissue used: 'full endosperm'
AT5G03010 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '12.7269'
Avg. embryo expression (LCM): '21.0607'
AT5G03010 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03010 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.14992 x 10-1 18 11 62.07% 29 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03010 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 6 3 66.67% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03000 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 0 0 0 3 100.00% 0 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.20174'
Avg. expression score in LCM sample: '1.3816'
Tissue used: 'pure endosperm, no chalazal'
AT5G03000 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 0 0 0 1 100.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.982286'
Avg. expression score in LCM sample: '1.3816'
Tissue used: 'full endosperm'
AT5G03000 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G03000 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03000 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G03000 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02990 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G02990 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.4307'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G02990 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G02990 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02990 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02990 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02980 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.78243'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G02980 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.11493'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G02980 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G02980 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02980 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02980 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02970 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 MEG 2.02306 x 10-1 54 6 17 20 90.00% 54.05% 60 37 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.2e-17'
Avg. expression score for this sample: '88.044'
Avg. expression score in LCM sample: '48.459'
Tissue used: 'pure endosperm, no chalazal'
AT5G02970 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 MEG 1.1 x 10-17 280 27 54 264 91.21% 83.02% 307 318 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.2e-17'
Avg. expression score for this sample: '150.692'
Avg. expression score in LCM sample: '48.459'
Tissue used: 'full endosperm'
AT5G02970 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.58143 x 10-1 16 7 1 2 69.57% 66.67% 23 3 TAIR8 Avg. embryo expression (dissected): '31.0524'
Avg. embryo expression (LCM): '13.1739'
AT5G02970 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.66458 x 10-1 43 12 78.18% 55 TAIR8 Mutant effect: 'MEG not affected by met1, dme or fie'
AT5G02970 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.637 x 10-3 267 24 91.75% 291 TAIR8 Mutant effect: 'MEG not affected by met1, dme or fie'
AT5G02970 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.3 x 10-17 497 8 98.42% 505 TAIR8 Mutant effect: 'MEG not affected by met1, dme or fie'
AT5G02960 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.27706 x 10-1 193 70 104 87 73.38% 45.55% 263 191 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.113943'
Avg. expression score for this sample: '1143.59'
Avg. expression score in LCM sample: '613.564'
Tissue used: 'pure endosperm, no chalazal'
AT5G02960 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.30204 x 10-1 442 175 380 588 71.64% 60.74% 617 968 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.113943'
Avg. expression score for this sample: '999.653'
Avg. expression score in LCM sample: '613.564'
Tissue used: 'full endosperm'
AT5G02960 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.8 x 10-6 442 236 57 24 65.19% 29.63% 678 81 TAIR8 Avg. embryo expression (dissected): '2590.65'
Avg. embryo expression (LCM): '4853.17'
AT5G02960 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.63253 x 10-1 117 81 59.09% 198 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02960 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.28 x 10-4 561 220 71.83% 781 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02960 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.7 x 10-26 578 103 84.88% 681 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02950 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.75118 x 10-1 28 22 17 41 56.00% 70.69% 50 58 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001088'
Avg. expression score for this sample: '11.9513'
Avg. expression score in LCM sample: '7.26077'
Tissue used: 'pure endosperm, no chalazal'
AT5G02950 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.6 x 10-5 115 29 26 132 79.86% 83.54% 144 158 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001088'
Avg. expression score for this sample: '24.1514'
Avg. expression score in LCM sample: '7.26077'
Tissue used: 'full endosperm'
AT5G02950 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 4.6514 x 10-1 71 86 13 13 45.22% 50.00% 157 26 TAIR8 Avg. embryo expression (dissected): '33.3085'
Avg. embryo expression (LCM): '41.1419'
AT5G02950 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.342 x 10-3 38 2 95.00% 40 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02950 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.09716 x 10-1 177 42 80.82% 219 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02950 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.0285 x 10-2 153 30 83.61% 183 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G02940 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 1 0 1 50.00% 100.00% 2 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.82788'
Avg. expression score in LCM sample: '1.66086'
Tissue used: 'pure endosperm, no chalazal'
AT5G02940 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 1 3 3 66.67% 50.00% 3 6 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '4.91824'
Avg. expression score in LCM sample: '1.66086'
Tissue used: 'full endosperm'
AT5G02940 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 3 4 1 0 42.86% 0.00% 7 1 TAIR8 Avg. embryo expression (dissected): '22.4059'
Avg. embryo expression (LCM): '19.0011'
AT5G02940 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'