| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G03406 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.06925 x 10-1 | 11 | 0 | 100.00% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03406 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 11 | 3 | 78.57% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 0 | 3 | 100.00% | 0 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.582043' Avg. expression score for this sample: '1.52938' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03400 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 1 | 0 | 0 | 85.71% | 7 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.582043' Avg. expression score for this sample: '3.54066' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G03400 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.568144' Avg. embryo expression (LCM): '0' |
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| AT5G03400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03400 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03400 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.19252 x 10-1 | 22 | 10 | 3 | 9 | 68.75% | 75.00% | 32 | 12 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.672574' Avg. expression score for this sample: '17.9575' Avg. expression score in LCM sample: '7.67231' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03390 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.69734 x 10-1 | 19 | 2 | 26 | 19 | 90.48% | 42.22% | 21 | 45 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.672574' Avg. expression score for this sample: '15.3389' Avg. expression score in LCM sample: '7.67231' Tissue used: 'full endosperm' |
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| AT5G03390 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.79492 x 10-1 | 26 | 7 | 9 | 0 | 78.79% | 0.00% | 33 | 9 | TAIR8 |
Avg. embryo expression (dissected): '34.7511' Avg. embryo expression (LCM): '51.5781' |
||||
| AT5G03390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03390 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.72003 x 10-1 | 3 | 3 | 50.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03390 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.1 x 10-13 | 153 | 6 | 96.23% | 159 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 482 | 39 | 8 | 188 | 92.51% | 95.92% | 521 | 196 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '256.439' Avg. expression score in LCM sample: '7.43715' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03380 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 1230 | 35 | 38 | 1080 | 97.23% | 96.60% | 1265 | 1118 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '569.039' Avg. expression score in LCM sample: '7.43715' Tissue used: 'full endosperm' |
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| AT5G03380 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.753 x 10-3 | 95 | 60 | 13 | 37 | 61.29% | 74.00% | 155 | 50 | TAIR8 |
Avg. embryo expression (dissected): '109.343' Avg. embryo expression (LCM): '31.7732' |
||||
| AT5G03380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.11825 x 10-1 | 170 | 4 | 97.70% | 174 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03380 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.35 x 10-4 | 770 | 11 | 98.59% | 781 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03380 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-10 | 3050 | 41 | 98.67% | 3091 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 1.2 x 10-6 | 93 | 9 | 2 | 25 | 91.18% | 92.59% | 102 | 27 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '3.0e-11' Avg. expression score for this sample: '45.8931' Avg. expression score in LCM sample: '21.2238' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03370 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 1.5 x 10-5 | 75 | 4 | 14 | 58 | 94.94% | 80.56% | 79 | 72 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '3.0e-11' Avg. expression score for this sample: '38.459' Avg. expression score in LCM sample: '21.2238' Tissue used: 'full endosperm' |
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| AT5G03370 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.81759 x 10-1 | 50 | 25 | 11 | 6 | 66.67% | 35.29% | 75 | 17 | TAIR8 |
Avg. embryo expression (dissected): '44.6361' Avg. embryo expression (LCM): '74.171' |
||||
| AT5G03370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 13 | 1 | 92.86% | 14 | TAIR8 | Mutant effect: 'MEG affected by fie' | ||||||||
| AT5G03370 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-5 | 130 | 46 | 73.86% | 176 | TAIR8 | Mutant effect: 'MEG affected by fie' | ||||||||
| AT5G03370 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.7455 x 10-2 | 119 | 23 | 83.80% | 142 | TAIR8 | Mutant effect: 'MEG affected by fie' | ||||||||
| AT5G03360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03360 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.37212' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G03360 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 1 | 0 | 0 | 0.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.120341' Avg. embryo expression (LCM): '0' |
|||||
| AT5G03360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03360 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03360 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.61' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '4.68245' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G03350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 1 | 0 | 0 | 66.67% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '19.6243' Avg. embryo expression (LCM): '11.4911' |
|||||
| AT5G03350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03345 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.36076 x 10-1 | 13 | 10 | 6 | 25 | 56.52% | 80.65% | 23 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.648885' Avg. expression score for this sample: '39.4733' Avg. expression score in LCM sample: '20.8857' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03345 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.85282 x 10-1 | 38 | 20 | 18 | 48 | 65.52% | 72.73% | 58 | 66 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.648885' Avg. expression score for this sample: '62.5898' Avg. expression score in LCM sample: '20.8857' Tissue used: 'full endosperm' |
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| AT5G03345 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 10 | 17 | 1 | 6 | 37.04% | 85.71% | 27 | 7 | TAIR8 |
Avg. embryo expression (dissected): '38.3319' Avg. embryo expression (LCM): '55.7726' |
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| AT5G03345 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.61808 x 10-1 | 11 | 3 | 78.57% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03345 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.28488 x 10-1 | 61 | 16 | 79.22% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03345 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.0 x 10-5 | 68 | 5 | 93.15% | 73 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03340 | AtCDC48C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.79878 x 10-1 | 226 | 303 | 100 | 623 | 42.72% | 86.17% | 529 | 723 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.4e-06' Avg. expression score for this sample: '352.013' Avg. expression score in LCM sample: '215.56' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03340 | AtCDC48C | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.6 x 10-8 | 387 | 225 | 156 | 798 | 63.24% | 83.65% | 612 | 954 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '7.4e-06' Avg. expression score for this sample: '337.641' Avg. expression score in LCM sample: '215.56' Tissue used: 'full endosperm' |
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| AT5G03340 | AtCDC48C | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.12358 x 10-1 | 153 | 265 | 40 | 109 | 36.60% | 73.15% | 418 | 149 | TAIR8 |
Avg. embryo expression (dissected): '246.78' Avg. embryo expression (LCM): '120.587' |
|||
| AT5G03340 | AtCDC48C | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.8 x 10-7 | 219 | 35 | 86.22% | 254 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03340 | AtCDC48C | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.6233 | 1397 | 557 | 71.49% | 1954 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03340 | AtCDC48C | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.02919 x 10-1 | 1139 | 407 | 73.67% | 1546 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.55576 x 10-1 | 25 | 4 | 9 | 9 | 86.21% | 50.00% | 29 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.115309' Avg. expression score for this sample: '29.5715' Avg. expression score in LCM sample: '18.2989' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03330 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.14132 x 10-1 | 41 | 6 | 22 | 50 | 87.23% | 69.44% | 47 | 72 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.115309' Avg. expression score for this sample: '41.2682' Avg. expression score in LCM sample: '18.2989' Tissue used: 'full endosperm' |
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| AT5G03330 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.61998 x 10-1 | 17 | 10 | 8 | 7 | 62.96% | 46.67% | 27 | 15 | TAIR8 |
Avg. embryo expression (dissected): '46.124' Avg. embryo expression (LCM): '21.3998' |
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| AT5G03330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 2 | 80.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03330 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.93 x 10-4 | 39 | 1 | 97.50% | 40 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03330 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 9.0 x 10-15 | 200 | 1 | 99.50% | 201 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '10.1125' Avg. expression score in LCM sample: '3.43931' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.44444 x 10-1 | 3 | 0 | 0 | 2 | 100.00% | 100.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.230769' Avg. expression score for this sample: '29.6334' Avg. expression score in LCM sample: '3.43931' Tissue used: 'full endosperm' |
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| AT5G03320 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 3 | 0 | 1 | 25.00% | 100.00% | 4 | 1 | TAIR8 |
Avg. embryo expression (dissected): '27.6886' Avg. embryo expression (LCM): '24.9539' |
||||
| AT5G03320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.22222 x 10-1 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 4 | 0 | 100.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03320 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 0 | 100.00% | 12 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.06396' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 2 | 0 | 0 | 0.00% | 2 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1.12611' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G03310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.40931' Avg. embryo expression (LCM): '0' |
||||||
| AT5G03310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03310 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03300 | ADK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.24436 x 10-1 | 245 | 53 | 84 | 98 | 82.21% | 53.85% | 298 | 182 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000573' Avg. expression score for this sample: '108.994' Avg. expression score in LCM sample: '57.1602' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03300 | ADK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.372 x 10-3 | 219 | 33 | 114 | 227 | 86.90% | 66.57% | 252 | 341 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000573' Avg. expression score for this sample: '99.2418' Avg. expression score in LCM sample: '57.1602' Tissue used: 'full endosperm' |
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| AT5G03300 | ADK2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.3 x 10-9 | 533 | 228 | 100 | 48 | 70.04% | 32.43% | 761 | 148 | TAIR8 |
Avg. embryo expression (dissected): '277.028' Avg. embryo expression (LCM): '332.513' |
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| AT5G03300 | ADK2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.25451 x 10-1 | 62 | 15 | 80.52% | 77 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03300 | ADK2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-10 | 217 | 20 | 91.56% | 237 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03300 | ADK2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.6 x 10-23 | 436 | 27 | 94.17% | 463 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03290 | IDH-V | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.51385 x 10-1 | 29 | 5 | 15 | 16 | 85.29% | 51.61% | 34 | 31 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '76.762' Avg. expression score in LCM sample: '52.4128' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03290 | IDH-V | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 41 | 11 | 22 | 24 | 78.85% | 52.17% | 52 | 46 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '72.7165' Avg. expression score in LCM sample: '52.4128' Tissue used: 'full endosperm' |
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| AT5G03290 | IDH-V | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.1521 x 10-2 | 48 | 11 | 13 | 3 | 81.36% | 18.75% | 59 | 16 | TAIR8 |
Avg. embryo expression (dissected): '94.8228' Avg. embryo expression (LCM): '72.89' |
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| AT5G03290 | IDH-V | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.37901 x 10-1 | 7 | 1 | 87.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03290 | IDH-V | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.4888 x 10-2 | 66 | 58 | 53.23% | 124 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03290 | IDH-V | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.7 x 10-10 | 198 | 15 | 92.96% | 213 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G03285 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 0 | 1 | 0 | 100.00% | 0.00% | 4 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '8.86203' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03285 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.823294' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G03285 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.14286 x 10-1 | 4 | 0 | 0 | 0 | 100.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '5.72062' Avg. embryo expression (LCM): '0' |
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| AT5G03285 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03285 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G03285 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03280 | EIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | MEG | 0.0 | 538 | 82 | 60 | 732 | 86.77% | 92.42% | 620 | 792 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '919.115' Avg. expression score in LCM sample: '610.287' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03280 | EIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | MEG | 0.0 | 808 | 125 | 109 | 993 | 86.60% | 90.11% | 933 | 1102 | TAIR8 |
Validated by Sanger sequencing: '+' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '540.398' Avg. expression score in LCM sample: '610.287' Tissue used: 'full endosperm' |
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| AT5G03280 | EIN2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.42414 x 10-1 | 69 | 87 | 23 | 52 | 44.23% | 69.33% | 156 | 75 | TAIR8 |
Avg. embryo expression (dissected): '212.136' Avg. embryo expression (LCM): '84.3308' |
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| AT5G03280 | EIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-19 | 155 | 80 | 65.96% | 235 | TAIR8 | Mutant effect: 'MEG affected by met1' | |||||||
| AT5G03280 | EIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.16 x 10-4 | 305 | 67 | 81.99% | 372 | TAIR8 | Mutant effect: 'MEG affected by met1' | |||||||
| AT5G03280 | EIN2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.5 x 10-5 | 269 | 65 | 80.54% | 334 | TAIR8 | Mutant effect: 'MEG affected by met1' | |||||||
| AT5G03270 | LOG6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03270 | LOG6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G03270 | LOG6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
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| AT5G03270 | LOG6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03270 | LOG6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03270 | LOG6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G03260 | LAC11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.242424' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G03260 | LAC11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 2.42424 x 10-1 | 1 | 5 | 0 | 0 | 16.67% | 6 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.242424' Avg. expression score for this sample: '.807536' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |