| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G04360 | LDA | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.98387 x 10-1 | 12 | 4 | 9 | 8 | 75.00% | 47.06% | 16 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '19.9883' Avg. expression score in LCM sample: '16.9761' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G04360 | LDA | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.97226 x 10-1 | 18 | 4 | 6 | 7 | 81.82% | 53.85% | 22 | 13 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '23.4778' Avg. expression score in LCM sample: '16.9761' Tissue used: 'full endosperm' |
||||
| AT5G04360 | LDA | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.57862 x 10-1 | 11 | 7 | 2 | 1 | 61.11% | 33.33% | 18 | 3 | TAIR8 |
Avg. embryo expression (dissected): '20.4156' Avg. embryo expression (LCM): '13.287' |
|||
| AT5G04360 | LDA | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04360 | LDA | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 5 | 3 | 62.50% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04360 | LDA | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.307 x 10-3 | 16 | 0 | 100.00% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G04350 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 1 | 0 | 0.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.379838' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G04350 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G04350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04350 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.22222 x 10-1 | 21 | 5 | 80.77% | 26 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04350 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 3 | 25.00% | 4 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04347 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 3 | 0 | 5 | 0.00% | 100.00% | 3 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '3.63417' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G04347 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.44395' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G04347 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G04347 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04347 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 12 | 9 | 57.14% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04347 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.79484 x 10-1 | 28 | 11 | 71.79% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04340 | ZAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.1 x 10-21 | 114 | 2 | 1 | 104 | 98.28% | 99.05% | 116 | 105 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '65.1358' Avg. expression score in LCM sample: '1.51389' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G04340 | ZAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.8 x 10-23 | 105 | 2 | 3 | 147 | 98.13% | 98.00% | 107 | 150 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '65.4314' Avg. expression score in LCM sample: '1.51389' Tissue used: 'full endosperm' |
||||
| AT5G04340 | ZAT6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.08392 x 10-1 | 1 | 1 | 1 | 4 | 50.00% | 80.00% | 2 | 5 | TAIR8 |
Avg. embryo expression (dissected): '5.17667' Avg. embryo expression (LCM): '0' |
|||
| AT5G04340 | ZAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.675 x 10-3 | 80 | 7 | 91.95% | 87 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04340 | ZAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 56 | 0 | 100.00% | 56 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04340 | ZAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.10965 x 10-1 | 159 | 0 | 100.00% | 159 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04330 | CYP84A4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.44444 x 10-1 | 1 | 0 | 0 | 4 | 100.00% | 100.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.323077' Avg. expression score for this sample: '.886264' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G04330 | CYP84A4 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 1 | 0 | 100.00% | 0.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.323077' Avg. expression score for this sample: '.403588' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||
| AT5G04330 | CYP84A4 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.330098' Avg. embryo expression (LCM): '0' |
||||
| AT5G04330 | CYP84A4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04330 | CYP84A4 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04330 | CYP84A4 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.62468 x 10-1 | 59 | 26 | 19 | 51 | 69.41% | 72.86% | 85 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.683087' Avg. expression score for this sample: '24.9805' Avg. expression score in LCM sample: '7.29017' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G04320 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 43 | 27 | 36 | 81 | 61.43% | 69.23% | 70 | 117 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.683087' Avg. expression score for this sample: '22.5628' Avg. expression score in LCM sample: '7.29017' Tissue used: 'full endosperm' |
|||||
| AT5G04320 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 9.17864 x 10-1 | 77 | 72 | 20 | 18 | 51.68% | 47.37% | 149 | 38 | TAIR8 |
Avg. embryo expression (dissected): '45.7436' Avg. embryo expression (LCM): '46.7179' |
||||
| AT5G04320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.80494 x 10-1 | 17 | 5 | 77.27% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04320 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.1684 x 10-2 | 91 | 64 | 58.71% | 155 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04320 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.078 x 10-3 | 106 | 21 | 83.46% | 127 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.89585 x 10-1 | 9 | 4 | 4 | 17 | 69.23% | 80.95% | 13 | 21 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.399328' Avg. expression score for this sample: '21.7072' Avg. expression score in LCM sample: '.867177' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G04310 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.40872 x 10-1 | 14 | 17 | 8 | 43 | 45.16% | 84.31% | 31 | 51 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.399328' Avg. expression score for this sample: '39.5886' Avg. expression score in LCM sample: '.867177' Tissue used: 'full endosperm' |
|||||
| AT5G04310 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 2 | 0 | 0 | 33.33% | 3 | 0 | TAIR8 |
Avg. embryo expression (dissected): '2.33152' Avg. embryo expression (LCM): '0' |
|||||
| AT5G04310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 7.26112 x 10-1 | 9 | 2 | 81.82% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04310 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.87723 x 10-1 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04310 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.88906 x 10-1 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04290 | KTF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.62988 x 10-1 | 723 | 387 | 525 | 1079 | 65.14% | 67.27% | 1110 | 1604 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.439714' Avg. expression score for this sample: '1571.58' Avg. expression score in LCM sample: '318.783' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G04290 | KTF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.40628 x 10-1 | 1426 | 663 | 715 | 1483 | 68.26% | 67.47% | 2089 | 2198 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.439714' Avg. expression score for this sample: '1507.95' Avg. expression score in LCM sample: '318.783' Tissue used: 'full endosperm' |
||||
| AT5G04290 | KTF1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 7.24552 x 10-1 | 1015 | 925 | 422 | 360 | 52.32% | 46.04% | 1940 | 782 | TAIR8 |
Avg. embryo expression (dissected): '2285.97' Avg. embryo expression (LCM): '657.894' |
|||
| AT5G04290 | KTF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.0395 x 10-1 | 210 | 98 | 68.18% | 308 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04290 | KTF1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.218 x 10-3 | 450 | 171 | 72.46% | 621 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04290 | KTF1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.5 x 10-10 | 719 | 211 | 77.31% | 930 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04280 | AtRZ-1c | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.82043 x 10-1 | 6 | 0 | 1 | 3 | 100.00% | 75.00% | 6 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.307283' Avg. expression score for this sample: '1082' Avg. expression score in LCM sample: '613.285' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G04280 | AtRZ-1c | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.64807 x 10-1 | 9 | 1 | 6 | 13 | 90.00% | 68.42% | 10 | 19 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.307283' Avg. expression score for this sample: '336.613' Avg. expression score in LCM sample: '613.285' Tissue used: 'full endosperm' |
||||
| AT5G04280 | AtRZ-1c | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 5 | 4 | 1 | 0 | 55.56% | 0.00% | 9 | 1 | TAIR8 |
Avg. embryo expression (dissected): '1792.21' Avg. embryo expression (LCM): '934.685' |
|||
| AT5G04280 | AtRZ-1c | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04280 | AtRZ-1c | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.18188 x 10-1 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04280 | AtRZ-1c | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.21893 x 10-1 | 9 | 0 | 100.00% | 9 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04275 | MIR172B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G04275 | MIR172B | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
||||||
| AT5G04275 | MIR172B | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
|||||
| AT5G04275 | MIR172B | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04275 | MIR172B | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04275 | MIR172B | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.60646 x 10-1 | 30 | 9 | 17 | 15 | 76.92% | 46.88% | 39 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.024071' Avg. expression score for this sample: '42.0728' Avg. expression score in LCM sample: '47.8417' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G04270 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.476 x 10-3 | 67 | 9 | 20 | 68 | 88.16% | 77.27% | 76 | 88 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.024071' Avg. expression score for this sample: '71.3268' Avg. expression score in LCM sample: '47.8417' Tissue used: 'full endosperm' |
|||||
| AT5G04270 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.05707 x 10-1 | 15 | 12 | 3 | 3 | 55.56% | 50.00% | 27 | 6 | TAIR8 |
Avg. embryo expression (dissected): '34.8962' Avg. embryo expression (LCM): '15.334' |
||||
| AT5G04270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.64371 x 10-1 | 10 | 1 | 90.91% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04270 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 9.0745 x 10-1 | 143 | 42 | 77.30% | 185 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04270 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 8.7 x 10-8 | 174 | 9 | 95.08% | 183 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04267 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G04267 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||||
| AT5G04267 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G04267 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04267 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04267 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04260 | WCRKC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '22.9426' Avg. expression score in LCM sample: '8.70117' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G04260 | WCRKC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '27.7462' Avg. expression score in LCM sample: '8.70117' Tissue used: 'full endosperm' |
||||||
| AT5G04260 | WCRKC2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '22.8083' Avg. embryo expression (LCM): '23.7734' |
|||||
| AT5G04260 | WCRKC2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04260 | WCRKC2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04260 | WCRKC2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 3 | 0 | 2 | 0 | 100.00% | 0.00% | 3 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '51.6053' Avg. expression score in LCM sample: '57.7775' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G04250 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 13 | 4 | 3 | 5 | 76.47% | 62.50% | 17 | 8 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '40.8732' Avg. expression score in LCM sample: '57.7775' Tissue used: 'full endosperm' |
|||||
| AT5G04250 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 0 | 0 | 100.00% | 1 | 0 | TAIR8 |
Avg. embryo expression (dissected): '15.1965' Avg. embryo expression (LCM): '7.79888' |
|||||
| AT5G04250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04250 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.8691 x 10-1 | 25 | 9 | 73.53% | 34 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04250 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.64632 x 10-1 | 42 | 8 | 84.00% | 50 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04240 | ELF6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.84984 x 10-1 | 23 | 8 | 13 | 42 | 74.19% | 76.36% | 31 | 55 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.021449' Avg. expression score for this sample: '156.74' Avg. expression score in LCM sample: '72.5195' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G04240 | ELF6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.8897 x 10-2 | 50 | 24 | 19 | 88 | 67.57% | 82.24% | 74 | 107 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.021449' Avg. expression score for this sample: '182.173' Avg. expression score in LCM sample: '72.5195' Tissue used: 'full endosperm' |
||||
| AT5G04240 | ELF6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.09357 x 10-1 | 24 | 24 | 7 | 14 | 50.00% | 66.67% | 48 | 21 | TAIR8 |
Avg. embryo expression (dissected): '174.051' Avg. embryo expression (LCM): '127.771' |
|||
| AT5G04240 | ELF6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.14683 x 10-1 | 22 | 9 | 70.97% | 31 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04240 | ELF6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.8488 x 10-2 | 60 | 7 | 89.55% | 67 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04240 | ELF6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.82 x 10-4 | 76 | 6 | 92.68% | 82 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04238 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 1 | 0 | 3 | 0.00% | 100.00% | 1 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '9.31532' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G04238 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 0 | 1 | 1 | 3 | 0.00% | 75.00% | 1 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.96679' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
|||||
| AT5G04238 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 0 | 1 | 0 | 1 | 0.00% | 100.00% | 1 | 1 | TAIR8 |
Avg. embryo expression (dissected): '6.83031' Avg. embryo expression (LCM): '0' |
||||
| AT5G04238 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04238 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04238 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.4 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04230 | PAL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 2 | 1 | 6 | 66.67% | 85.71% | 6 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.487607' Avg. expression score for this sample: '8.78227' Avg. expression score in LCM sample: '5.46762' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G04230 | PAL3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.76471 x 10-1 | 4 | 1 | 0 | 4 | 80.00% | 100.00% | 5 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.487607' Avg. expression score for this sample: '4.33172' Avg. expression score in LCM sample: '5.46762' Tissue used: 'full endosperm' |
||||
| AT5G04230 | PAL3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 7 | 4 | 8 | 12.50% | 66.67% | 8 | 12 | TAIR8 |
Avg. embryo expression (dissected): '14.1511' Avg. embryo expression (LCM): '.590253' |
|||
| AT5G04230 | PAL3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |