| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G04885 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.23212 x 10-1 | 28 | 14 | 66.67% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04885 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.93844 x 10-1 | 92 | 54 | 48 | 99 | 63.01% | 67.35% | 146 | 147 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.125798' Avg. expression score for this sample: '81.662' Avg. expression score in LCM sample: '138.043' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04885 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.0341 x 10-2 | 71 | 63 | 55 | 100 | 52.99% | 64.52% | 134 | 155 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.125798' Avg. expression score for this sample: '74.991' Avg. expression score in LCM sample: '138.043' Tissue used: 'full endosperm' |
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| AT5G04885 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.65691 x 10-1 | 175 | 158 | 32 | 49 | 52.55% | 60.49% | 333 | 81 | TAIR8 |
Avg. embryo expression (dissected): '182.513' Avg. embryo expression (LCM): '177.98' |
||||
| AT5G04885 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.06597 x 10-1 | 12 | 13 | 48.00% | 25 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04885 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 6.25119 x 10-1 | 10 | 8 | 55.56% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04870 | CPK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 7.8 x 10-13 | 108 | 1 | 99.08% | 109 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04870 | CPK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.4159 x 10-1 | 27 | 8 | 26 | 30 | 77.14% | 53.57% | 35 | 56 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.472059' Avg. expression score for this sample: '298.3' Avg. expression score in LCM sample: '56.6017' Tissue used: 'pure endosperm, no chalazal' |
||||
| AT5G04870 | CPK1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.84721 x 10-1 | 63 | 20 | 32 | 80 | 75.90% | 71.43% | 83 | 112 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.472059' Avg. expression score for this sample: '362.909' Avg. expression score in LCM sample: '56.6017' Tissue used: 'full endosperm' |
||||
| AT5G04870 | CPK1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.41786 x 10-1 | 21 | 13 | 3 | 0 | 61.76% | 0.00% | 34 | 3 | TAIR8 |
Avg. embryo expression (dissected): '267.334' Avg. embryo expression (LCM): '128.625' |
|||
| AT5G04870 | CPK1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.7972 x 10-2 | 15 | 15 | 50.00% | 30 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04870 | CPK1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.5 x 10-5 | 45 | 2 | 95.74% | 47 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04860 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.74928 x 10-1 | 107 | 18 | 85.60% | 125 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 3 | 3 | 4 | 57.14% | 57.14% | 7 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.011939' Avg. expression score for this sample: '14.0703' Avg. expression score in LCM sample: '13.8601' Tissue used: 'pure endosperm, no chalazal' |
|||||
| AT5G04860 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.967 x 10-3 | 28 | 6 | 4 | 40 | 82.35% | 90.91% | 34 | 44 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.011939' Avg. expression score for this sample: '50.9727' Avg. expression score in LCM sample: '13.8601' Tissue used: 'full endosperm' |
|||||
| AT5G04860 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.2381 x 10-1 | 1 | 4 | 0 | 0 | 20.00% | 5 | 0 | TAIR8 |
Avg. embryo expression (dissected): '8.44289' Avg. embryo expression (LCM): '5.91509' |
|||||
| AT5G04860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 1 | 85.71% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04860 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2684 x 10-2 | 160 | 73 | 68.67% | 233 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04853 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04853 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G04853 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '0' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G04853 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '0' Avg. embryo expression (LCM): '0' |
||||||
| AT5G04853 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04853 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04850 | VPS60.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04850 | VPS60.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '195.491' Avg. expression score in LCM sample: '45.2255' Tissue used: 'pure endosperm, no chalazal' |
||||||
| AT5G04850 | VPS60.2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '213.654' Avg. expression score in LCM sample: '45.2255' Tissue used: 'full endosperm' |
||||||
| AT5G04850 | VPS60.2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '115.809' Avg. embryo expression (LCM): '34.7747' |
|||||
| AT5G04850 | VPS60.2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04850 | VPS60.2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04840 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 1 | 0 | 1 | 1 | 100.00% | 50.00% | 1 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.132391' Avg. expression score for this sample: '15.4047' Avg. expression score in LCM sample: '5.15897' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04840 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.9681 x 10-2 | 12 | 0 | 1 | 6 | 100.00% | 85.71% | 12 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.132391' Avg. expression score for this sample: '16.2845' Avg. expression score in LCM sample: '5.15897' Tissue used: 'full endosperm' |
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| AT5G04840 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 2 | 0 | 0 | 50.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '22.437' Avg. embryo expression (LCM): '25.5441' |
|||||
| AT5G04840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04840 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '60.2848' Avg. expression score in LCM sample: '29.2782' Tissue used: 'pure endosperm, no chalazal' |
|||||||
| AT5G04830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '72.1787' Avg. expression score in LCM sample: '29.2782' Tissue used: 'full endosperm' |
|||||||
| AT5G04830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '35.1767' Avg. embryo expression (LCM): '34.2221' |
||||||
| AT5G04830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04820 | OFP13 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 8 | 0 | 100.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04820 | OFP13 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.454545' Avg. expression score for this sample: '20.6096' Avg. expression score in LCM sample: '11.3615' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04820 | OFP13 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.54545 x 10-1 | 4 | 0 | 0 | 2 | 100.00% | 100.00% | 4 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.454545' Avg. expression score for this sample: '15.8804' Avg. expression score in LCM sample: '11.3615' Tissue used: 'full endosperm' |
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| AT5G04820 | OFP13 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 0 | 0 | 75.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '50.3717' Avg. embryo expression (LCM): '39.886' |
||||
| AT5G04820 | OFP13 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04820 | OFP13 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.42857 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04810 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.391 x 10-3 | 20 | 2 | 90.91% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 8 | 11 | 4 | 18 | 42.11% | 81.82% | 19 | 22 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.489225' Avg. expression score for this sample: '279.727' Avg. expression score in LCM sample: '121.596' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04810 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 4.89649 x 10-1 | 33 | 24 | 5 | 10 | 57.89% | 66.67% | 57 | 15 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.489225' Avg. expression score for this sample: '230.606' Avg. expression score in LCM sample: '121.596' Tissue used: 'full endosperm' |
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| AT5G04810 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.69362 x 10-1 | 15 | 13 | 6 | 9 | 53.57% | 60.00% | 28 | 15 | TAIR8 |
Avg. embryo expression (dissected): '620.429' Avg. embryo expression (LCM): '449.522' |
||||
| AT5G04810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.68307 x 10-1 | 10 | 3 | 76.92% | 13 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04810 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.3633 x 10-2 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04800 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.6 x 10-5 | 78 | 17 | 82.11% | 95 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 3.12844 x 10-1 | 30 | 18 | 14 | 13 | 62.50% | 48.15% | 48 | 27 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.120575' Avg. expression score for this sample: '58.3503' Avg. expression score in LCM sample: '66.9049' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.02343 x 10-1 | 29 | 6 | 35 | 28 | 82.86% | 44.44% | 35 | 63 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.120575' Avg. expression score for this sample: '55.9168' Avg. expression score in LCM sample: '66.9049' Tissue used: 'full endosperm' |
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| AT5G04800 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.47404 x 10-1 | 98 | 90 | 15 | 12 | 52.13% | 44.44% | 188 | 27 | TAIR8 |
Avg. embryo expression (dissected): '196.091' Avg. embryo expression (LCM): '339.609' |
||||
| AT5G04800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 9.9374 x 10-2 | 22 | 7 | 75.86% | 29 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 3.9006 x 10-1 | 73 | 42 | 63.48% | 115 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04790 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '111.782' Avg. expression score in LCM sample: '35.8482' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04790 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '124.888' Avg. expression score in LCM sample: '35.8482' Tissue used: 'full endosperm' |
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| AT5G04790 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '264.27' Avg. embryo expression (LCM): '398.195' |
||||||
| AT5G04790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04790 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G04780 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 3.19913 x 10-1 | 38 | 4 | 90.48% | 42 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54545 x 10-1 | 2 | 0 | 0 | 4 | 100.00% | 100.00% | 2 | 4 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.260002' Avg. expression score for this sample: '3.15806' Avg. expression score in LCM sample: '5.46762' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.84085 x 10-1 | 7 | 4 | 2 | 14 | 63.64% | 87.50% | 11 | 16 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.260002' Avg. expression score for this sample: '8.23725' Avg. expression score in LCM sample: '5.46762' Tissue used: 'full endosperm' |
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| AT5G04780 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.80129 x 10-1 | 13 | 6 | 2 | 2 | 68.42% | 50.00% | 19 | 4 | TAIR8 |
Avg. embryo expression (dissected): '14.9201' Avg. embryo expression (LCM): '19.3402' |
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| AT5G04780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.37179 x 10-1 | 7 | 4 | 63.64% | 11 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04770 | CAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.3 x 10-6 | 274 | 41 | 86.98% | 315 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04770 | CAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.5316 x 10-2 | 197 | 153 | 91 | 400 | 56.29% | 81.47% | 350 | 491 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.2e-11' Avg. expression score for this sample: '926.767' Avg. expression score in LCM sample: '423.344' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04770 | CAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.1 x 10-11 | 272 | 199 | 155 | 942 | 57.75% | 85.87% | 471 | 1097 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '9.2e-11' Avg. expression score for this sample: '614.79' Avg. expression score in LCM sample: '423.344' Tissue used: 'full endosperm' |
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| AT5G04770 | CAT6 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 4.30801 x 10-1 | 15 | 14 | 7 | 15 | 51.72% | 68.18% | 29 | 22 | TAIR8 |
Avg. embryo expression (dissected): '84.6812' Avg. embryo expression (LCM): '27.5786' |
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| AT5G04770 | CAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.659 x 10-3 | 110 | 18 | 85.94% | 128 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04770 | CAT6 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.0 x 10-6 | 210 | 28 | 88.24% | 238 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G04760 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 5.774 x 10-3 | 76 | 3 | 96.20% | 79 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.74625 x 10-1 | 18 | 2 | 4 | 13 | 90.00% | 76.47% | 20 | 17 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004386' Avg. expression score for this sample: '290.273' Avg. expression score in LCM sample: '18.2695' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.3316 x 10-2 | 46 | 8 | 6 | 23 | 85.19% | 79.31% | 54 | 29 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.004386' Avg. expression score for this sample: '706.963' Avg. expression score in LCM sample: '18.2695' Tissue used: 'full endosperm' |
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| AT5G04760 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.80129 x 10-1 | 14 | 5 | 3 | 1 | 73.68% | 25.00% | 19 | 4 | TAIR8 |
Avg. embryo expression (dissected): '195.514' Avg. embryo expression (LCM): '47.9612' |
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| AT5G04760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.2564 x 10-2 | 10 | 6 | 62.50% | 16 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 5.98538 x 10-1 | 31 | 4 | 88.57% | 35 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04750 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 822 | 26 | 96.93% | 848 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.817 x 10-3 | 255 | 40 | 82 | 111 | 86.44% | 57.51% | 295 | 193 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.374106' Avg. expression score for this sample: '471.235' Avg. expression score in LCM sample: '46.9304' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.63652 x 10-1 | 626 | 84 | 368 | 234 | 88.17% | 38.87% | 710 | 602 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.374106' Avg. expression score for this sample: '828.311' Avg. expression score in LCM sample: '46.9304' Tissue used: 'full endosperm' |
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| AT5G04750 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.9039 x 10-2 | 67 | 37 | 7 | 11 | 64.42% | 61.11% | 104 | 18 | TAIR8 |
Avg. embryo expression (dissected): '168.84' Avg. embryo expression (LCM): '88.651' |
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| AT5G04750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.455 x 10-3 | 46 | 40 | 53.49% | 86 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.2 x 10-14 | 203 | 222 | 47.76% | 425 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04740 | ACR12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '34.4102' Avg. expression score in LCM sample: '11.4497' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04740 | ACR12 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '0' Avg. expression score for this sample: '47.203' Avg. expression score in LCM sample: '11.4497' Tissue used: 'full endosperm' |
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| AT5G04740 | ACR12 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '79.7293' Avg. embryo expression (LCM): '49.9706' |
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| AT5G04740 | ACR12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04740 | ACR12 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04740 | ACR12 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G04730 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.0606 x 10-2 | 0 | 6 | 0 | 0 | 0.00% | 6 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.093783' Avg. expression score for this sample: '.946178' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G04730 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 6 | 1 | 3 | 0 | 85.71% | 0.00% | 7 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.093783' Avg. expression score for this sample: '1.48964' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G04730 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 3 | 1 | 0 | 0 | 75.00% | 4 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.918252' Avg. embryo expression (LCM): '0' |
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| AT5G04730 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |