Displaying data sets 35501 - 35600 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G06570 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06570 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06560 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 26 12 19 36 68.42% 65.45% 38 55 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000417'
Avg. expression score for this sample: '86.5582'
Avg. expression score in LCM sample: '44.1966'
Tissue used: 'pure endosperm, no chalazal'
AT5G06560 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.7 x 10-6 59 14 19 128 80.82% 87.07% 73 147 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000417'
Avg. expression score for this sample: '137.416'
Avg. expression score in LCM sample: '44.1966'
Tissue used: 'full endosperm'
AT5G06560 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.05249 x 10-1 26 19 6 5 57.78% 45.45% 45 11 TAIR8 Avg. embryo expression (dissected): '90.6617'
Avg. embryo expression (LCM): '70.4159'
AT5G06560 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.38523 x 10-1 37 4 90.24% 41 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06560 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.78421 x 10-1 52 9 85.25% 61 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06560 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 6.72646 x 10-1 87 19 82.08% 106 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06550 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '21.4676'
Avg. expression score in LCM sample: '7.23137'
Tissue used: 'pure endosperm, no chalazal'
AT5G06550 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '36.152'
Avg. expression score in LCM sample: '7.23137'
Tissue used: 'full endosperm'
AT5G06550 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '56.5826'
Avg. embryo expression (LCM): '105.04'
AT5G06550 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06550 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06550 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06540 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 12 6 3 6 66.67% 66.67% 18 9 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.71431'
Avg. expression score for this sample: '23.3492'
Avg. expression score in LCM sample: '3.14535'
Tissue used: 'pure endosperm, no chalazal'
AT5G06540 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.35353 x 10-1 22 6 5 10 78.57% 66.67% 28 15 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.71431'
Avg. expression score for this sample: '50.821'
Avg. expression score in LCM sample: '3.14535'
Tissue used: 'full endosperm'
AT5G06540 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.70223 x 10-1 22 9 6 5 70.97% 45.45% 31 11 TAIR8 Avg. embryo expression (dissected): '63.8379'
Avg. embryo expression (LCM): '43.7038'
AT5G06540 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.8475 x 10-2 0 3 0.00% 3 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06540 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 8 3 72.73% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06540 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.37478 x 10-1 7 1 87.50% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06530 ABCG22 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.5 x 10-7 90 0 7 12 100.00% 63.16% 90 19 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.3e-37'
Avg. expression score for this sample: '35.6784'
Avg. expression score in LCM sample: '1.10234'
Tissue used: 'pure endosperm, no chalazal'
AT5G06530 ABCG22 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 0.0 636 0 84 115 100.00% 57.79% 636 199 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.3e-37'
Avg. expression score for this sample: '172.707'
Avg. expression score in LCM sample: '1.10234'
Tissue used: 'full endosperm'
AT5G06530 ABCG22 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 2 0 1 0 100.00% 0.00% 2 1 TAIR8 Avg. embryo expression (dissected): '3.03564'
Avg. embryo expression (LCM): '0'
AT5G06530 ABCG22 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.673 x 10-3 54 15 78.26% 69 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06530 ABCG22 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 69 92 42.86% 161 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06530 ABCG22 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.2 x 10-7 287 4 98.63% 291 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06520 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.44444 x 10-1 3 0 0 2 100.00% 100.00% 3 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001823'
Avg. expression score for this sample: '1.77147'
Avg. expression score in LCM sample: '7.93687'
Tissue used: 'pure endosperm, no chalazal'
AT5G06520 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.758 x 10-3 12 0 0 11 100.00% 100.00% 12 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.001823'
Avg. expression score for this sample: '6.36638'
Avg. expression score in LCM sample: '7.93687'
Tissue used: 'full endosperm'
AT5G06520 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '.142454'
Avg. embryo expression (LCM): '0'
AT5G06520 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 8 0 100.00% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06520 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.16 x 10-4 301 125 70.66% 426 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06520 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.9 x 10-8 18 27 40.00% 45 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06510 NF-YA10 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G06510 NF-YA10 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G06510 NF-YA10 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G06510 NF-YA10 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06510 NF-YA10 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06510 NF-YA10 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06500 AGL96 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G06500 AGL96 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 0 0 1 0 0.00% 0 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.478101'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G06500 AGL96 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G06500 AGL96 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06500 AGL96 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.1625 67 12 84.81% 79 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06500 AGL96 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 4 7 36.36% 11 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06490 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G06490 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.305106'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G06490 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G06490 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06490 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06490 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06480 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '3.95743'
Avg. expression score in LCM sample: '2.26348'
Tissue used: 'pure endosperm, no chalazal'
AT5G06480 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '4.22008'
Avg. expression score in LCM sample: '2.26348'
Tissue used: 'full endosperm'
AT5G06480 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '7.65035'
Avg. embryo expression (LCM): '25.1172'
AT5G06480 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06480 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06480 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06470 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.362315'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G06470 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '2.42042'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G06470 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '4.72127'
Avg. embryo expression (LCM): '1.74564'
AT5G06470 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06470 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06470 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06460 UBA 2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '313.478'
Avg. expression score in LCM sample: '317.005'
Tissue used: 'pure endosperm, no chalazal'
AT5G06460 UBA 2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '266.782'
Avg. expression score in LCM sample: '317.005'
Tissue used: 'full endosperm'
AT5G06460 UBA 2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '455.834'
Avg. embryo expression (LCM): '469.992'
AT5G06460 UBA 2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06460 UBA 2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06460 UBA 2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06450 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.07985 x 10-1 4 2 2 9 66.67% 81.82% 6 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.63191'
Avg. expression score for this sample: '23.4483'
Avg. expression score in LCM sample: '15.6827'
Tissue used: 'pure endosperm, no chalazal'
AT5G06450 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 4 3 4 13 57.14% 76.47% 7 17 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.63191'
Avg. expression score for this sample: '13.1205'
Avg. expression score in LCM sample: '15.6827'
Tissue used: 'full endosperm'
AT5G06450 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.35052 x 10-1 2 12 0 1 14.29% 100.00% 14 1 TAIR8 Avg. embryo expression (dissected): '22.6822'
Avg. embryo expression (LCM): '13.4'
AT5G06450 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.12071 x 10-1 6 0 100.00% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06450 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 6 2 75.00% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06450 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 5.215 x 10-3 23 0 100.00% 23 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06440 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 4.71591 x 10-1 71 32 33 83 68.93% 71.55% 103 116 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.075509'
Avg. expression score for this sample: '61.4443'
Avg. expression score in LCM sample: '16.153'
Tissue used: 'pure endosperm, no chalazal'
AT5G06440 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.13267 x 10-1 211 85 69 172 71.28% 71.37% 296 241 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.075509'
Avg. expression score for this sample: '114.254'
Avg. expression score in LCM sample: '16.153'
Tissue used: 'full endosperm'
AT5G06440 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.83457 x 10-1 36 38 7 12 48.65% 63.16% 74 19 TAIR8 Avg. embryo expression (dissected): '41.7507'
Avg. embryo expression (LCM): '13.0735'
AT5G06440 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.1444 x 10-2 41 7 85.42% 48 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06440 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.7 x 10-10 81 1 98.78% 82 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06440 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 4.6 x 10-22 178 1 99.44% 179 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06430 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.10619 x 10-1 21 3 3 11 87.50% 78.57% 24 14 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.5e-06'
Avg. expression score for this sample: '20.5732'
Avg. expression score in LCM sample: '10.1857'
Tissue used: 'pure endosperm, no chalazal'
AT5G06430 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.7 x 10-6 31 6 31 168 83.78% 84.42% 37 199 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.5e-06'
Avg. expression score for this sample: '55.9677'
Avg. expression score in LCM sample: '10.1857'
Tissue used: 'full endosperm'
AT5G06430 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.3736 x 10-2 32 11 4 2 74.42% 33.33% 43 6 TAIR8 Avg. embryo expression (dissected): '31.2025'
Avg. embryo expression (LCM): '46.7933'
AT5G06430 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.40927 x 10-1 30 3 90.91% 33 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06430 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.7474 x 10-2 56 18 75.68% 74 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06430 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.34933 x 10-1 46 7 86.79% 53 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06420 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.86845 x 10-1 10 3 9 3 76.92% 25.00% 13 12 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.865998'
Avg. expression score for this sample: '18.6677'
Avg. expression score in LCM sample: '5.20306'
Tissue used: 'pure endosperm, no chalazal'
AT5G06420 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 22 5 11 14 81.48% 56.00% 27 25 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.865998'
Avg. expression score for this sample: '23.2404'
Avg. expression score in LCM sample: '5.20306'
Tissue used: 'full endosperm'
AT5G06420 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.77086 x 10-1 16 4 6 0 80.00% 0.00% 20 6 TAIR8 Avg. embryo expression (dissected): '22.8282'
Avg. embryo expression (LCM): '24.9037'
AT5G06420 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 5.36514 x 10-1 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06420 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.7 x 10-5 36 71 33.64% 107 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06420 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.1 x 10-5 84 9 90.32% 93 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06410 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.11194 x 10-1 10 1 3 4 90.91% 57.14% 11 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.059057'
Avg. expression score for this sample: '17.4358'
Avg. expression score in LCM sample: '7.64292'
Tissue used: 'pure endosperm, no chalazal'
AT5G06410 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.4778 x 10-2 14 0 1 7 100.00% 87.50% 14 8 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.059057'
Avg. expression score for this sample: '27.3824'
Avg. expression score in LCM sample: '7.64292'
Tissue used: 'full endosperm'
AT5G06410 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 3 2 0 0 60.00% 5 0 TAIR8 Avg. embryo expression (dissected): '12.7526'
Avg. embryo expression (LCM): '7.83655'
AT5G06410 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06410 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.0224 x 10-1 22 2 91.67% 24 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06410 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.9685 x 10-1 23 1 95.83% 24 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G06400 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 1 0 1 50.00% 100.00% 2 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.916182'
Avg. expression score in LCM sample: '.470333'
Tissue used: 'pure endosperm, no chalazal'
AT5G06400 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 26 12 2 5 68.42% 71.43% 38 7 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '8.94981'
Avg. expression score in LCM sample: '.470333'
Tissue used: 'full endosperm'