Displaying data sets 35101 - 35200 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G07200 GA20OX3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 5.63074 x 10-1 1432 650 964 1880 68.78% 66.10% 2082 2844 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.221127'
Avg. expression score for this sample: '2693.82'
Avg. expression score in LCM sample: '1527.52'
Tissue used: 'pure endosperm, no chalazal'
AT5G07200 GA20OX3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.3633 x 10-2 2465 1321 1469 2748 65.11% 65.16% 3786 4217 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.221127'
Avg. expression score for this sample: '3064.54'
Avg. expression score in LCM sample: '1527.52'
Tissue used: 'full endosperm'
AT5G07200 GA20OX3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.23164 x 10-1 69 47 23 24 59.48% 51.06% 116 47 TAIR8 Avg. embryo expression (dissected): '143.808'
Avg. embryo expression (LCM): '41.4935'
AT5G07200 GA20OX3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.70872 x 10-1 480 230 67.61% 710 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07200 GA20OX3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 3 2 60.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07200 GA20OX3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.7538 x 10-2 29 5 85.29% 34 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07190 ATS3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.7 x 10-5 442 69 290 38 86.50% 11.59% 511 328 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '5.2e-10'
Avg. expression score for this sample: '423.254'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G07190 ATS3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.7 x 10-13 8605 1414 3196 2432 85.89% 43.21% 10019 5628 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '5.2e-10'
Avg. expression score for this sample: '4972.51'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G07190 ATS3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 5.1 x 10-6 1099 361 549 109 75.27% 16.57% 1460 658 TAIR8 Avg. embryo expression (dissected): '1875.52'
Avg. embryo expression (LCM): '210.042'
AT5G07190 ATS3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 1010 1578 39.03% 2588 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07190 ATS3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 32 124 20.51% 156 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07190 ATS3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.68 x 10-4 162 36 81.82% 198 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07180 ERL2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 8.30238 x 10-1 22 14 4 7 61.11% 63.64% 36 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.354182'
Avg. expression score for this sample: '8.56123'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G07180 ERL2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.00608 x 10-1 23 3 28 22 88.46% 44.00% 26 50 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.354182'
Avg. expression score for this sample: '13.9563'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G07180 ERL2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.13895 x 10-1 147 128 52 45 53.45% 46.39% 275 97 TAIR8 Avg. embryo expression (dissected): '103.658'
Avg. embryo expression (LCM): '266.267'
AT5G07180 ERL2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.6241 x 10-2 3 10 23.08% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07180 ERL2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.56243 x 10-1 24 17 58.54% 41 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07180 ERL2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.65586 x 10-1 100 92 52.08% 192 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07170 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G07170 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G07170 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G07170 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07170 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07170 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07160 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.65322 x 10-1 12 0 3 8 100.00% 72.73% 12 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.232547'
Avg. expression score for this sample: '67.3446'
Avg. expression score in LCM sample: '45.8281'
Tissue used: 'pure endosperm, no chalazal'
AT5G07160 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 0 0 2 1 33.33% 0 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.232547'
Avg. expression score for this sample: '12.0341'
Avg. expression score in LCM sample: '45.8281'
Tissue used: 'full endosperm'
AT5G07160 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '7.47734'
Avg. embryo expression (LCM): '0'
AT5G07160 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07160 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07160 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07150 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 8 3 3 1 72.73% 25.00% 11 4 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.270345'
Avg. expression score for this sample: '60.3323'
Avg. expression score in LCM sample: '45.299'
Tissue used: 'pure endosperm, no chalazal'
AT5G07150 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 2.93306 x 10-1 14 7 15 11 66.67% 42.31% 21 26 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.270345'
Avg. expression score for this sample: '44.3699'
Avg. expression score in LCM sample: '45.299'
Tissue used: 'full endosperm'
AT5G07150 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 7 7 1 0 50.00% 0.00% 14 1 TAIR8 Avg. embryo expression (dissected): '62.154'
Avg. embryo expression (LCM): '34.1468'
AT5G07150 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07150 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 3 2 60.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07150 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.295 x 10-3 14 0 100.00% 14 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07140 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.59098 x 10-1 21 21 6 15 50.00% 71.43% 42 21 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.431974'
Avg. expression score for this sample: '287.315'
Avg. expression score in LCM sample: '147.185'
Tissue used: 'pure endosperm, no chalazal'
AT5G07140 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.27827 x 10-1 61 45 58 129 57.55% 68.98% 106 187 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.431974'
Avg. expression score for this sample: '268.19'
Avg. expression score in LCM sample: '147.185'
Tissue used: 'full endosperm'
AT5G07140 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 31 32 5 7 49.21% 58.33% 63 12 TAIR8 Avg. embryo expression (dissected): '515.055'
Avg. embryo expression (LCM): '268.666'
AT5G07140 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.695 x 10-3 15 0 100.00% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07140 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.7725 x 10-2 45 13 77.59% 58 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07140 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.9 x 10-4 72 14 83.72% 86 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07135 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G07135 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G07135 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G07135 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07135 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07135 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07130 LAC13 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '15.3316'
Avg. expression score in LCM sample: '8.98043'
Tissue used: 'pure endosperm, no chalazal'
AT5G07130 LAC13 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '10.1737'
Avg. expression score in LCM sample: '8.98043'
Tissue used: 'full endosperm'
AT5G07130 LAC13 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '35.8201'
Avg. embryo expression (LCM): '13.94'
AT5G07130 LAC13 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07130 LAC13 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07130 LAC13 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07120 SNX2b endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 16 13 9 29 55.17% 76.32% 29 38 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000679'
Avg. expression score for this sample: '68.2771'
Avg. expression score in LCM sample: '43.8145'
Tissue used: 'pure endosperm, no chalazal'
AT5G07120 SNX2b endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 8.7 x 10-5 60 14 19 112 81.08% 85.50% 74 131 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000679'
Avg. expression score for this sample: '114.551'
Avg. expression score in LCM sample: '43.8145'
Tissue used: 'full endosperm'
AT5G07120 SNX2b embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 17 16 5 4 51.52% 44.44% 33 9 TAIR8 Avg. embryo expression (dissected): '75.6866'
Avg. embryo expression (LCM): '81.0279'
AT5G07120 SNX2b endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 8.3775 x 10-2 15 0 100.00% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07120 SNX2b endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.503 x 10-3 45 2 95.74% 47 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07120 SNX2b endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.496 x 10-3 72 5 93.51% 77 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07110 PRA1.B6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 4 0 1 2 100.00% 66.67% 4 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.681659'
Avg. expression score for this sample: '6.1449'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G07110 PRA1.B6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 5 0 2 1 100.00% 33.33% 5 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.681659'
Avg. expression score for this sample: '7.75567'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G07110 PRA1.B6 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 1 0 1 0 100.00% 0.00% 1 1 TAIR8 Avg. embryo expression (dissected): '6.06455'
Avg. embryo expression (LCM): '1.35633'
AT5G07110 PRA1.B6 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 3 1 75.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07110 PRA1.B6 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.25 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07110 PRA1.B6 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.66304 x 10-1 9 0 100.00% 9 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07100 WRKY26 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '2.23968'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G07100 WRKY26 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 1.0 0 0 0 2 100.00% 0 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '8.79714'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G07100 WRKY26 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '7.8958'
Avg. embryo expression (LCM): '2.17263'
AT5G07100 WRKY26 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07100 WRKY26 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07100 WRKY26 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 4 0 100.00% 4 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07090 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 7.54622 x 10-1 6 5 4 7 54.55% 63.64% 11 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.669906'
Avg. expression score for this sample: '798.046'
Avg. expression score in LCM sample: '636.096'
Tissue used: 'pure endosperm, no chalazal'
AT5G07090 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 7.68813 x 10-1 11 3 7 4 78.57% 36.36% 14 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.669906'
Avg. expression score for this sample: '762.995'
Avg. expression score in LCM sample: '636.096'
Tissue used: 'full endosperm'
AT5G07090 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 16 24 3 10 40.00% 76.92% 40 13 TAIR8 Avg. embryo expression (dissected): '2157.85'
Avg. embryo expression (LCM): '3720.15'
AT5G07090 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 7.48567 x 10-1 9 4 69.23% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07090 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.6397 x 10-2 16 2 88.89% 18 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07090 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.7926 x 10-2 20 3 86.96% 23 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07080 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 1 0 0 0 100.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.170149'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G07080 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 2 0 0 1 100.00% 100.00% 2 1 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '.351018'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G07080 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G07080 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07080 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07080 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.33333 x 10-1 1 1 50.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07070 CIPK2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 3.24544 x 10-1 2 6 4 7 25.00% 63.64% 8 11 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '33.8581'
Avg. expression score in LCM sample: '7.87808'
Tissue used: 'pure endosperm, no chalazal'
AT5G07070 CIPK2 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.93294 x 10-1 24 4 9 16 85.71% 64.00% 28 25 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '52.5572'
Avg. expression score in LCM sample: '7.87808'
Tissue used: 'full endosperm'
AT5G07070 CIPK2 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 1 0 0 0.00% 1 0 TAIR8 Avg. embryo expression (dissected): '15.2873'
Avg. embryo expression (LCM): '10.4613'
AT5G07070 CIPK2 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07070 CIPK2 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 3.14237 x 10-1 5 0 100.00% 5 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07070 CIPK2 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.28 x 10-4 26 0 100.00% 26 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07060 MAC5C endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.7397 x 10-2 76 7 12 10 91.57% 45.45% 83 22 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000454'
Avg. expression score for this sample: '30.0134'
Avg. expression score in LCM sample: '45.931'
Tissue used: 'pure endosperm, no chalazal'
AT5G07060 MAC5C endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.2868 x 10-2 37 3 4 12 92.50% 75.00% 40 16 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.000454'
Avg. expression score for this sample: '16.2616'
Avg. expression score in LCM sample: '45.931'
Tissue used: 'full endosperm'
AT5G07060 MAC5C embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 3.8461 x 10-2 7 0 0 1 100.00% 100.00% 7 1 TAIR8 Avg. embryo expression (dissected): '2.5521'
Avg. embryo expression (LCM): '0'
AT5G07060 MAC5C endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07060 MAC5C endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 7.0 x 10-10 72 70 50.70% 142 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07060 MAC5C endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.8221 x 10-2 116 9 92.80% 125 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07050 UMAMIT9 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '1.13962'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G07050 UMAMIT9 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.25782'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G07050 UMAMIT9 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '5.3378'
Avg. embryo expression (LCM): '3.71734'
AT5G07050 UMAMIT9 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'