Displaying data sets 34501 - 34600 of 169464 in total
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Gene ID Gene Name Tissue Study Parent A Parent B Stage Replicate Replicate Imprinting Status Overall Imprinting Status Imprinting p-value Imprinting Score A x B, A counts A x B, B counts B x A, A counts B x A, B counts % Maternal AxB % Maternal BxA Tot Counts AxB Tot Counts BxA Strain Score Strain p-value Genome Assembly Notes
AT5G08110 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 4 2 2 1 66.67% 33.33% 6 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.204683'
Avg. expression score for this sample: '13.1467'
Avg. expression score in LCM sample: '14.4187'
Tissue used: 'pure endosperm, no chalazal'
AT5G08110 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.9656 x 10-2 7 0 0 12 100.00% 100.00% 7 12 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.204683'
Avg. expression score for this sample: '18.3228'
Avg. expression score in LCM sample: '14.4187'
Tissue used: 'full endosperm'
AT5G08110 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 2 1 1 0 66.67% 0.00% 3 1 TAIR8 Avg. embryo expression (dissected): '17.1517'
Avg. embryo expression (LCM): '17.0797'
AT5G08110 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 5 1 83.33% 6 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08110 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.67457 x 10-1 5 3 62.50% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08110 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 3.8283 x 10-2 10 8 55.56% 18 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08100 ASPGA1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 2 1 0 3 66.67% 100.00% 3 3 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.447032'
Avg. expression score for this sample: '144.766'
Avg. expression score in LCM sample: '75.8706'
Tissue used: 'pure endosperm, no chalazal'
AT5G08100 ASPGA1 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.4472 x 10-1 3 1 1 8 75.00% 88.89% 4 9 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.447032'
Avg. expression score for this sample: '82.9802'
Avg. expression score in LCM sample: '75.8706'
Tissue used: 'full endosperm'
AT5G08100 ASPGA1 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 1 3 0 1 25.00% 100.00% 4 1 TAIR8 Avg. embryo expression (dissected): '241.687'
Avg. embryo expression (LCM): '98.296'
AT5G08100 ASPGA1 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08100 ASPGA1 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 4.01187 x 10-1 9 4 69.23% 13 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08100 ASPGA1 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 13 2 86.67% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08090 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 0 1 0 0 0.00% 1 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.06489'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G08090 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.0 0 0 0 2 100.00% 0 2 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '1'
Avg. expression score for this sample: '1.82821'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G08090 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '.769844'
Avg. embryo expression (LCM): '0'
AT5G08090 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08090 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 1 0 100.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08090 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08080 SYP132 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 19 8 13 19 70.37% 59.38% 27 32 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.661858'
Avg. expression score for this sample: '25.2437'
Avg. expression score in LCM sample: '16.932'
Tissue used: 'pure endosperm, no chalazal'
AT5G08080 SYP132 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 5.06894 x 10-1 42 17 21 53 71.19% 71.62% 59 74 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.661858'
Avg. expression score for this sample: '36.0806'
Avg. expression score in LCM sample: '16.932'
Tissue used: 'full endosperm'
AT5G08080 SYP132 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.40541 x 10-1 19 13 0 5 59.38% 100.00% 32 5 TAIR8 Avg. embryo expression (dissected): '30.0685'
Avg. embryo expression (LCM): '19.29'
AT5G08080 SYP132 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 2.0401 x 10-2 12 0 100.00% 12 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08080 SYP132 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 6.55631 x 10-1 47 24 66.20% 71 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08080 SYP132 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 x 10-5 95 9 91.35% 104 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08075 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G08075 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G08075 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '0'
Avg. embryo expression (LCM): '0'
AT5G08075 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08075 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08075 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08070 TCP17 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.352219'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G08070 TCP17 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '.248528'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G08070 TCP17 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '22.4145'
Avg. embryo expression (LCM): '13.8019'
AT5G08070 TCP17 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08070 TCP17 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08070 TCP17 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08060 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 1.0 23 12 7 13 65.71% 65.00% 35 20 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.446741'
Avg. expression score for this sample: '181.268'
Avg. expression score in LCM sample: '166.219'
Tissue used: 'pure endosperm, no chalazal'
AT5G08060 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.10621 x 10-1 17 2 7 21 89.47% 75.00% 19 28 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.446741'
Avg. expression score for this sample: '191.706'
Avg. expression score in LCM sample: '166.219'
Tissue used: 'full endosperm'
AT5G08060 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 8.47407 x 10-1 24 20 5 5 54.55% 50.00% 44 10 TAIR8 Avg. embryo expression (dissected): '322.067'
Avg. embryo expression (LCM): '307.723'
AT5G08060 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 6.3827 x 10-2 10 0 100.00% 10 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08060 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 8.44176 x 10-1 37 12 75.51% 49 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08060 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.0539 x 10-2 32 3 91.43% 35 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08055 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'pure endosperm, no chalazal'
AT5G08055 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '0'
Avg. expression score in LCM sample: '0'
Tissue used: 'full endosperm'
AT5G08055 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 4.28571 x 10-1 0 3 0 0 0.00% 3 0 TAIR8 Avg. embryo expression (dissected): '7.13904'
Avg. embryo expression (LCM): '5.14902'
AT5G08055 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08055 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08055 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08050 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '191.279'
Avg. expression score in LCM sample: '60.9963'
Tissue used: 'pure endosperm, no chalazal'
AT5G08050 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '222.797'
Avg. expression score in LCM sample: '60.9963'
Tissue used: 'full endosperm'
AT5G08050 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '275.715'
Avg. embryo expression (LCM): '230.324'
AT5G08050 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08050 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08050 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08040 TOM5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '62.3584'
Avg. expression score in LCM sample: '88.5843'
Tissue used: 'pure endosperm, no chalazal'
AT5G08040 TOM5 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '180.609'
Avg. expression score in LCM sample: '88.5843'
Tissue used: 'full endosperm'
AT5G08040 TOM5 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '120.576'
Avg. embryo expression (LCM): '399.124'
AT5G08040 TOM5 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08040 TOM5 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08040 TOM5 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08030 GDPD6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '7.45324'
Avg. expression score in LCM sample: '1.17583'
Tissue used: 'pure endosperm, no chalazal'
AT5G08030 GDPD6 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '18.2072'
Avg. expression score in LCM sample: '1.17583'
Tissue used: 'full endosperm'
AT5G08030 GDPD6 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '50.452'
Avg. embryo expression (LCM): '16.1503'
AT5G08030 GDPD6 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08030 GDPD6 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08030 GDPD6 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08020 RPA70B endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '24.2117'
Avg. expression score in LCM sample: '21.165'
Tissue used: 'pure endosperm, no chalazal'
AT5G08020 RPA70B endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 no data 0.0 0 0 0 0 0 0 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '0'
Avg. expression score for this sample: '18.4691'
Avg. expression score in LCM sample: '21.165'
Tissue used: 'full endosperm'
AT5G08020 RPA70B embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 0 0 0 TAIR8 Avg. embryo expression (dissected): '83.4577'
Avg. embryo expression (LCM): '125.937'
AT5G08020 RPA70B endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08020 RPA70B endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08020 RPA70B endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 0.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08010 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 9.05919 x 10-1 80 8 44 31 90.91% 41.33% 88 75 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.056029'
Avg. expression score for this sample: '47.8783'
Avg. expression score in LCM sample: '14.5509'
Tissue used: 'pure endosperm, no chalazal'
AT5G08010 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 3.6101 x 10-2 158 53 69 176 74.88% 71.84% 211 245 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.056029'
Avg. expression score for this sample: '80.3219'
Avg. expression score in LCM sample: '14.5509'
Tissue used: 'full endosperm'
AT5G08010 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.06 x 10-4 109 26 27 13 80.74% 32.50% 135 40 TAIR8 Avg. embryo expression (dissected): '76.3412'
Avg. embryo expression (LCM): '49.7068'
AT5G08010 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.7795 x 10-1 29 6 82.86% 35 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08010 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 2.0 x 10-9 107 5 95.54% 112 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08010 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 8.0 x 10-25 267 5 98.16% 272 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08000 E13L3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 2.04728 x 10-1 28 6 6 16 82.35% 72.73% 34 22 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.740045'
Avg. expression score for this sample: '54.4479'
Avg. expression score in LCM sample: '92.6557'
Tissue used: 'pure endosperm, no chalazal'
AT5G08000 E13L3 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.12113 x 10-1 10 0 13 5 100.00% 27.78% 10 18 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.740045'
Avg. expression score for this sample: '21.3244'
Avg. expression score in LCM sample: '92.6557'
Tissue used: 'full endosperm'
AT5G08000 E13L3 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 2.77213 x 10-1 13 7 2 5 65.00% 71.43% 20 7 TAIR8 Avg. embryo expression (dissected): '48.4927'
Avg. embryo expression (LCM): '17.7453'
AT5G08000 E13L3 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.05882 x 10-1 0 1 0.00% 1 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08000 E13L3 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.0 0 0 0 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G08000 E13L3 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 2 0 100.00% 2 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07990 TT7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 9.7497 x 10-2 15 1 2 8 93.75% 80.00% 16 10 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.4e-07'
Avg. expression score for this sample: '392.907'
Avg. expression score in LCM sample: '28.1024'
Tissue used: 'pure endosperm, no chalazal'
AT5G07990 TT7 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 1.9 x 10-6 51 0 12 70 100.00% 85.37% 51 82 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '2.4e-07'
Avg. expression score for this sample: '596.001'
Avg. expression score in LCM sample: '28.1024'
Tissue used: 'full endosperm'
AT5G07990 TT7 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 1.0 9 4 11 5 69.23% 31.25% 13 16 TAIR8 Avg. embryo expression (dissected): '466.531'
Avg. embryo expression (LCM): '50.071'
AT5G07990 TT7 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 1.7054 x 10-2 10 5 66.67% 15 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07990 TT7 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.7 x 10-5 164 0 100.00% 164 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07990 TT7 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 1.0 x 10-9 452 0 100.00% 452 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07980 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.64087 x 10-1 11 10 8 17 52.38% 68.00% 21 25 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.184381'
Avg. expression score for this sample: '38.4638'
Avg. expression score in LCM sample: '29.925'
Tissue used: 'pure endosperm, no chalazal'
AT5G07980 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 4.2069 x 10-2 39 13 12 54 75.00% 81.82% 52 66 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.184381'
Avg. expression score for this sample: '65.9282'
Avg. expression score in LCM sample: '29.925'
Tissue used: 'full endosperm'
AT5G07980 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 6.82745 x 10-1 20 14 7 7 58.82% 50.00% 34 14 TAIR8 Avg. embryo expression (dissected): '68.25'
Avg. embryo expression (LCM): '47.71'
AT5G07980 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 3.6438 x 10-1 14 2 87.50% 16 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07980 endosperm Hsieh et al. 2011 A. thaliana Ler fie-1 A. thaliana Col late torpedo / early bent N/A N/A no data 1.4852 x 10-2 61 8 88.41% 69 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07980 endosperm Hsieh et al. 2011 A. thaliana Col-gl dme-2 A. thaliana Ler late torpedo / early bent N/A N/A no data 2.36 x 10-4 99 9 91.67% 108 TAIR8 Mutant effect: 'N/A (not a MEG)'
AT5G07970 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 1 vs 1 not imprinted 6.18082 x 10-1 10 2 8 18 83.33% 69.23% 12 26 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.075643'
Avg. expression score for this sample: '99.7286'
Avg. expression score in LCM sample: '61.0257'
Tissue used: 'pure endosperm, no chalazal'
AT5G07970 endosperm Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent 2 vs 2 not imprinted 6.2844 x 10-2 56 19 13 49 74.67% 79.03% 75 62 TAIR8 Validated by Sanger sequencing: '-'
Overall p-value after pooling both replicates: '.075643'
Avg. expression score for this sample: '146.653'
Avg. expression score in LCM sample: '61.0257'
Tissue used: 'full endosperm'
AT5G07970 embryo Hsieh et al. 2011 A. thaliana Col A. thaliana Ler late torpedo / early bent N/A N/A not imprinted 7.35226 x 10-1 26 30 8 6 46.43% 42.86% 56 14 TAIR8 Avg. embryo expression (dissected): '133.763'
Avg. embryo expression (LCM): '132.217'
AT5G07970 endosperm Hsieh et al. 2011 A. thaliana Ler A. thaliana Col-gl met1-6 late torpedo / early bent N/A N/A no data 4.08623 x 10-1 5 3 62.50% 8 TAIR8 Mutant effect: 'N/A (not a MEG)'