| Gene ID | Gene Name | Tissue | Study | Parent A | Parent B | Stage | Replicate | Replicate Imprinting Status | Overall Imprinting Status | Imprinting p-value | Imprinting Score | A x B, A counts | A x B, B counts | B x A, A counts | B x A, B counts | % Maternal AxB | % Maternal BxA | Tot Counts AxB | Tot Counts BxA | Strain Score | Strain p-value | Genome Assembly | Notes |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AT5G62830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.424273' Avg. expression score in LCM sample: '2.39576' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62830 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 1 | 0 | 0 | 1 | 100.00% | 100.00% | 1 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2.76691' Avg. expression score in LCM sample: '2.39576' Tissue used: 'full endosperm' |
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| AT5G62830 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.472835' Avg. embryo expression (LCM): '0' |
||||||
| AT5G62830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62830 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.51515 x 10-1 | 3 | 7 | 30.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62830 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 7 | 0 | 100.00% | 7 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '7.15469' Avg. expression score in LCM sample: '6.58467' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62820 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 3 | 0 | 0 | 1 | 100.00% | 100.00% | 3 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '64.7337' Avg. expression score in LCM sample: '6.58467' Tissue used: 'full endosperm' |
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| AT5G62820 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Avg. embryo expression (dissected): '6.05553' Avg. embryo expression (LCM): '1.13027' |
|||||
| AT5G62820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62820 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 6 | 0 | 100.00% | 6 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62820 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 10 | 0 | 100.00% | 10 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62810 | PEX14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 46 | 12 | 19 | 19 | 79.31% | 50.00% | 58 | 38 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.549036' Avg. expression score for this sample: '161.696' Avg. expression score in LCM sample: '40.0959' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62810 | PEX14 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.11126 x 10-1 | 57 | 8 | 31 | 39 | 87.69% | 55.71% | 65 | 70 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.549036' Avg. expression score for this sample: '186.785' Avg. expression score in LCM sample: '40.0959' Tissue used: 'full endosperm' |
||||
| AT5G62810 | PEX14 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.37264 x 10-1 | 33 | 22 | 22 | 4 | 60.00% | 15.38% | 55 | 26 | TAIR8 |
Avg. embryo expression (dissected): '185.078' Avg. embryo expression (LCM): '118.603' |
|||
| AT5G62810 | PEX14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.74868 x 10-1 | 8 | 6 | 57.14% | 14 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62810 | PEX14 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 7.569 x 10-3 | 69 | 56 | 55.20% | 125 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62810 | PEX14 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.9 x 10-7 | 109 | 9 | 92.37% | 118 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.58285 x 10-1 | 22 | 9 | 13 | 28 | 70.97% | 68.29% | 31 | 41 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '309.435' Avg. expression score in LCM sample: '70.3883' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62800 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 7.88681 x 10-1 | 29 | 26 | 18 | 50 | 52.73% | 73.53% | 55 | 68 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '514.238' Avg. expression score in LCM sample: '70.3883' Tissue used: 'full endosperm' |
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| AT5G62800 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 5.89911 x 10-1 | 96 | 86 | 31 | 34 | 52.75% | 52.31% | 182 | 65 | TAIR8 |
Avg. embryo expression (dissected): '1287.66' Avg. embryo expression (LCM): '431.852' |
||||
| AT5G62800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.03372 x 10-1 | 12 | 7 | 63.16% | 19 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62800 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.4683 x 10-2 | 2 | 6 | 25.00% | 8 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62800 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.18095 x 10-1 | 10 | 10 | 50.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62790 | DXR | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.3215 x 10-2 | 762 | 274 | 289 | 515 | 73.55% | 64.05% | 1036 | 804 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.151352' Avg. expression score for this sample: '289.267' Avg. expression score in LCM sample: '104.399' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62790 | DXR | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.79096 x 10-1 | 1018 | 467 | 507 | 978 | 68.55% | 65.86% | 1485 | 1485 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.151352' Avg. expression score for this sample: '321.78' Avg. expression score in LCM sample: '104.399' Tissue used: 'full endosperm' |
||||
| AT5G62790 | DXR | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 2.4106 x 10-2 | 1048 | 894 | 195 | 197 | 53.96% | 50.26% | 1942 | 392 | TAIR8 |
Avg. embryo expression (dissected): '543.911' Avg. embryo expression (LCM): '641.166' |
|||
| AT5G62790 | DXR | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.6288 x 10-2 | 338 | 126 | 72.84% | 464 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62790 | DXR | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.1 x 10-8 | 224 | 44 | 83.58% | 268 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62790 | DXR | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 598 | 73 | 89.12% | 671 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 0 | 0 | 2 | 0 | 0.00% | 0 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.036075' Avg. expression score for this sample: '1.24988' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62780 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.9779 x 10-2 | 2 | 6 | 2 | 0 | 25.00% | 0.00% | 8 | 2 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.036075' Avg. expression score for this sample: '4.60972' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G62780 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 4 | 0 | 2 | 20.00% | 100.00% | 5 | 2 | TAIR8 |
Avg. embryo expression (dissected): '5.39764' Avg. embryo expression (LCM): '8.07516' |
||||
| AT5G62780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 2.30769 x 10-1 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62780 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.30769 x 10-1 | 1 | 0 | 100.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62780 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.1978 x 10-2 | 3 | 0 | 100.00% | 3 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 2 | 1 | 0 | 3 | 66.67% | 100.00% | 3 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.576471' Avg. expression score for this sample: '31.6359' Avg. expression score in LCM sample: '19.8275' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62770 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 2 | 0 | 0 | 1 | 100.00% | 100.00% | 2 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.576471' Avg. expression score for this sample: '46.1021' Avg. expression score in LCM sample: '19.8275' Tissue used: 'full endosperm' |
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| AT5G62770 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '4.09701' Avg. embryo expression (LCM): '3.39082' |
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| AT5G62770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62770 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62770 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 6.40405 x 10-1 | 8 | 1 | 1 | 2 | 88.89% | 66.67% | 9 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '74.1866' Avg. expression score in LCM sample: '36.9506' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62760 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 1.0 | 9 | 4 | 6 | 8 | 69.23% | 57.14% | 13 | 14 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '72.8583' Avg. expression score in LCM sample: '36.9506' Tissue used: 'full endosperm' |
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| AT5G62760 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 2 | 0 | 0 | 0 | 100.00% | 2 | 0 | TAIR8 |
Avg. embryo expression (dissected): '69.3169' Avg. embryo expression (LCM): '50.8371' |
|||||
| AT5G62760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.10976 x 10-1 | 0 | 2 | 0.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62760 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.37802 x 10-1 | 9 | 9 | 50.00% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62760 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.10372 x 10-1 | 35 | 6 | 85.37% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 9.2357 x 10-2 | 3 | 0 | 20 | 12 | 100.00% | 37.50% | 3 | 32 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034773' Avg. expression score for this sample: '100.375' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62750 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 2.70062 x 10-1 | 20 | 17 | 3 | 3 | 54.05% | 50.00% | 37 | 6 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.034773' Avg. expression score for this sample: '60.3469' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G62750 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 1 | 1 | 1 | 2 | 50.00% | 66.67% | 2 | 3 | TAIR8 |
Avg. embryo expression (dissected): '35.9847' Avg. embryo expression (LCM): '0' |
||||
| AT5G62750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.5817 x 10-2 | 5 | 0 | 100.00% | 5 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62750 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 2.3 x 10-8 | 38 | 1 | 97.44% | 39 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62750 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 6.017 x 10-3 | 75 | 33 | 69.44% | 108 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62740 | HIR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.5576 x 10-2 | 71 | 19 | 27 | 90 | 78.89% | 76.92% | 90 | 117 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000018' Avg. expression score for this sample: '335.822' Avg. expression score in LCM sample: '117.422' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62740 | HIR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 3.57 x 10-4 | 63 | 18 | 17 | 104 | 77.78% | 85.95% | 81 | 121 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.000018' Avg. expression score for this sample: '499.281' Avg. expression score in LCM sample: '117.422' Tissue used: 'full endosperm' |
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| AT5G62740 | HIR1 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 21 | 29 | 1 | 7 | 42.00% | 87.50% | 50 | 8 | TAIR8 |
Avg. embryo expression (dissected): '96.5331' Avg. embryo expression (LCM): '68.3563' |
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| AT5G62740 | HIR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 5.35903 x 10-1 | 35 | 6 | 85.37% | 41 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62740 | HIR1 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.1436 x 10-2 | 151 | 19 | 88.82% | 170 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62740 | HIR1 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.516 x 10-3 | 229 | 28 | 89.11% | 257 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62730 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.145195' Avg. expression score in LCM sample: '0' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62730 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | no data | 1.0 | 0 | 0 | 0 | 1 | 100.00% | 0 | 1 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '.890799' Avg. expression score in LCM sample: '0' Tissue used: 'full endosperm' |
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| AT5G62730 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 0.0 | 0 | 0 | 0 | 0 | 0 | 0 | TAIR8 |
Avg. embryo expression (dissected): '.164395' Avg. embryo expression (LCM): '0' |
||||||
| AT5G62730 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62730 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62730 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.66128 x 10-1 | 10 | 9 | 1 | 4 | 52.63% | 80.00% | 19 | 5 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.434478' Avg. expression score for this sample: '12.3823' Avg. expression score in LCM sample: '2.88079' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62720 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.92075 x 10-1 | 2 | 2 | 2 | 1 | 50.00% | 33.33% | 4 | 3 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.434478' Avg. expression score for this sample: '4.06216' Avg. expression score in LCM sample: '2.88079' Tissue used: 'full endosperm' |
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| AT5G62720 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 35 | 40 | 17 | 23 | 46.67% | 57.50% | 75 | 40 | TAIR8 |
Avg. embryo expression (dissected): '105.821' Avg. embryo expression (LCM): '17.268' |
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| AT5G62720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62720 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 4.96212 x 10-1 | 2 | 0 | 100.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62720 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 1.0 | 0 | 0 | 0 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||||
| AT5G62710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 8.07921 x 10-1 | 15 | 4 | 10 | 8 | 78.95% | 44.44% | 19 | 18 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.585844' Avg. expression score for this sample: '58.5085' Avg. expression score in LCM sample: '39.8607' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62710 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.81504 x 10-1 | 6 | 2 | 10 | 10 | 75.00% | 50.00% | 8 | 20 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.585844' Avg. expression score for this sample: '32.8777' Avg. expression score in LCM sample: '39.8607' Tissue used: 'full endosperm' |
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| AT5G62710 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 6.18363 x 10-1 | 52 | 56 | 13 | 8 | 48.15% | 38.10% | 108 | 21 | TAIR8 |
Avg. embryo expression (dissected): '341.69' Avg. embryo expression (LCM): '273.651' |
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| AT5G62710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 4.09091 x 10-1 | 0 | 1 | 0.00% | 1 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62710 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.0 | 1 | 1 | 50.00% | 2 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62710 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4002 x 10-2 | 4 | 11 | 26.67% | 15 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | ||||||||
| AT5G62700 | TUB3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 5.47189 x 10-1 | 37 | 54 | 26 | 101 | 40.66% | 79.53% | 91 | 127 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.067954' Avg. expression score for this sample: '3193.93' Avg. expression score in LCM sample: '2012.41' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62700 | TUB3 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.548 x 10-3 | 69 | 49 | 64 | 275 | 58.47% | 81.12% | 118 | 339 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.067954' Avg. expression score for this sample: '1365.68' Avg. expression score in LCM sample: '2012.41' Tissue used: 'full endosperm' |
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| AT5G62700 | TUB3 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 8.08 x 10-4 | 53 | 147 | 23 | 40 | 26.50% | 63.49% | 200 | 63 | TAIR8 |
Avg. embryo expression (dissected): '3991.07' Avg. embryo expression (LCM): '3446.93' |
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| AT5G62700 | TUB3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 6.7047 x 10-1 | 49 | 17 | 74.24% | 66 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62700 | TUB3 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.87 x 10-4 | 85 | 11 | 88.54% | 96 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62700 | TUB3 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.467 x 10-3 | 35 | 30 | 53.85% | 65 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62690 | TUB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 4.54886 x 10-1 | 26 | 18 | 20 | 33 | 59.09% | 62.26% | 44 | 53 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '2423.73' Avg. expression score in LCM sample: '1100.43' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62690 | TUB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 6.62245 x 10-1 | 57 | 25 | 34 | 77 | 69.51% | 69.37% | 82 | 111 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '1' Avg. expression score for this sample: '1831.51' Avg. expression score in LCM sample: '1100.43' Tissue used: 'full endosperm' |
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| AT5G62690 | TUB2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 40 | 42 | 7 | 9 | 48.78% | 56.25% | 82 | 16 | TAIR8 |
Avg. embryo expression (dissected): '3180.55' Avg. embryo expression (LCM): '2115.93' |
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| AT5G62690 | TUB2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 3.54339 x 10-1 | 17 | 5 | 77.27% | 22 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62690 | TUB2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 1.6126 x 10-2 | 17 | 1 | 94.44% | 18 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62690 | TUB2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 4.4021 x 10-2 | 18 | 2 | 90.00% | 20 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62680 | GTR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 1.0 | 4 | 3 | 1 | 6 | 57.14% | 85.71% | 7 | 7 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.059907' Avg. expression score for this sample: '21.6077' Avg. expression score in LCM sample: '7.15788' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62680 | GTR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 5.1982 x 10-2 | 87 | 27 | 24 | 71 | 76.32% | 74.74% | 114 | 95 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.059907' Avg. expression score for this sample: '117.018' Avg. expression score in LCM sample: '7.15788' Tissue used: 'full endosperm' |
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| AT5G62680 | GTR2 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 1.0 | 4 | 7 | 0 | 2 | 36.36% | 100.00% | 11 | 2 | TAIR8 |
Avg. embryo expression (dissected): '24.8448' Avg. embryo expression (LCM): '7.77376' |
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| AT5G62680 | GTR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 1.95642 x 10-1 | 13 | 8 | 61.90% | 21 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62680 | GTR2 | endosperm | Hsieh et al. 2011 | A. thaliana Ler fie-1 | A. thaliana Col | late torpedo / early bent | N/A | N/A | no data | 8.0 x 10-8 | 69 | 0 | 100.00% | 69 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62680 | GTR2 | endosperm | Hsieh et al. 2011 | A. thaliana Col-gl dme-2 | A. thaliana Ler | late torpedo / early bent | N/A | N/A | no data | 2.4 x 10-16 | 260 | 4 | 98.48% | 264 | TAIR8 | Mutant effect: 'N/A (not a MEG)' | |||||||
| AT5G62670 | HA11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 1 vs 1 | not imprinted | 7.48856 x 10-1 | 200 | 137 | 121 | 338 | 59.35% | 73.64% | 337 | 459 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.044543' Avg. expression score for this sample: '330.445' Avg. expression score in LCM sample: '370.505' Tissue used: 'pure endosperm, no chalazal' |
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| AT5G62670 | HA11 | endosperm | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | 2 vs 2 | not imprinted | 8.555 x 10-3 | 182 | 95 | 74 | 288 | 65.70% | 79.56% | 277 | 362 | TAIR8 |
Validated by Sanger sequencing: '-' Overall p-value after pooling both replicates: '.044543' Avg. expression score for this sample: '175.012' Avg. expression score in LCM sample: '370.505' Tissue used: 'full endosperm' |
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| AT5G62670 | HA11 | embryo | Hsieh et al. 2011 | A. thaliana Col | A. thaliana Ler | late torpedo / early bent | N/A | N/A | not imprinted | 3.00078 x 10-1 | 85 | 73 | 28 | 40 | 53.80% | 58.82% | 158 | 68 | TAIR8 |
Avg. embryo expression (dissected): '135.369' Avg. embryo expression (LCM): '65.7065' |
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| AT5G62670 | HA11 | endosperm | Hsieh et al. 2011 | A. thaliana Ler | A. thaliana Col-gl met1-6 | late torpedo / early bent | N/A | N/A | no data | 8.7 x 10-5 | 78 | 10 | 88.64% | 88 | TAIR8 | Mutant effect: 'N/A (not a MEG)' |